mRNA_M-pyrifera_M_contig89407.20724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89407.20724.1
Unique NamemRNA_M-pyrifera_M_contig89407.20724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: A0A3B4B212_9GOBI (DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4B212_9GOBI)

HSP 1 Score: 99.4 bits (246), Expect = 5.630e-22
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:    1 ASVSRGPPPRAPFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVF 327
            A+   G  P  PF+ ++PGT FVVD FR+ P  G    FL+HFHSDH+ GLH+     IY   +T  LVK +L V    +HIL  +  E  VEGV V +L ANHCPGA M +F
Sbjct:  565 AATGDGKYPCCPFYKKIPGTKFVVDAFRYGPVEGISTYFLTHFHSDHYDGLHKNSTFPIYCNKITGNLVKSKLRVPEQYVHILPMN-TEVTVEGVKVTLLDANHCPGAAMLLF 676
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: A0A8J9ZN42_BRALA (DCLRE1A protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZN42_BRALA)

HSP 1 Score: 99.0 bits (245), Expect = 7.670e-22
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   28 RAPFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            + PF+ ++PGT FVVD FR+    G    FLSHFH DH+ GL + +R  IY++ +T  LVK+++ V +  +H L  D    DVEGV V +L ANHCPGAVMF+F+
Sbjct:  556 QCPFYKKIPGTTFVVDAFRYGSIPGCTAYFLSHFHYDHYQGLRKHFRHAIYSSKVTCNLVKKKIRVADRYLHPLPLD-TPCDVEGVQVTLLEANHCPGAVMFLFQ 659
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: UPI0008F98E5A (DNA cross-link repair 1A protein-like n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F98E5A)

HSP 1 Score: 98.6 bits (244), Expect = 1.050e-21
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   10 SRGPPPR-APFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            S GPP R  PF+ R+P T FVVD F +    G    FLSHFHSDH++GL + +   IY + +TA LV  ++GVK   + IL    E   + GV V  L ANHCPGAVMF+FR
Sbjct:  621 SIGPPQRKCPFYKRIPDTTFVVDAFSYGIIPGITSYFLSHFHSDHYIGLRKSFNKPIYCSKITASLVMMKIGVKEEFLRILNLK-EPRIINGVEVTTLDANHCPGAVMFLFR 731
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: C3Y3U3_BRAFL (Lactamase_B domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y3U3_BRAFL)

HSP 1 Score: 96.7 bits (239), Expect = 1.820e-21
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   28 RAPFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            + PF+ ++PGT FVVD FR+    G    FLSHFH DH+ GL + +R  IY++ +T  LVK+++ V +  +H L  +    DVEGV V +L ANHCPGAVMF+F+
Sbjct:   28 QCPFYKKIPGTTFVVDAFRYGTIPGCTAYFLSHFHYDHYQGLSKHFRHAIYSSKVTCNLVKKKIRVADRYLHPLPLN-TPCDVEGVQVTLLEANHCPGAVMFLFQ 131
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: UPI001603F1E0 (DNA cross-link repair protein SNM1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603F1E0)

HSP 1 Score: 96.7 bits (239), Expect = 4.930e-21
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   28 RAPFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            + PF+ ++PGT FVVD FR+    G    FLSHFH DH+ GL + +R  IY++ +T  LVK+++ V +  +H L  +    DVEGV V +L ANHCPGAVMF+F+
Sbjct:  509 QCPFYKKIPGTTFVVDAFRYGTIPGCTAYFLSHFHYDHYQGLSKHFRHPIYSSKVTCNLVKKKIRVADRYLHPLALN-TPCDVEGVQVTLLEANHCPGAVMFLFQ 612
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: A0A7S3GK57_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GK57_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 2.830e-20
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   31 APFFHRVPGTDFVVDGFRWRPRLG------FLSHFHSDHFVGLHQEY-RGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            AP +  +PGT   VD  R++   G      FLSHFHSDH+ GLH ++ RG+IY +  TARL    +GVK  +   + D+GE  +V+G  +  + ANHCPGAVMF+F 
Sbjct:   14 APHYKVIPGTKLTVDALRYQSVNGQKCRHYFLSHFHSDHYCGLHPDFDRGIIYASPPTARLAVMCIGVKVERFRTI-DEGEVIEVDGTNISTVSANHCPGAVMFIFE 119
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: UPI001455670C (uncharacterized protein LOC117294691 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455670C)

HSP 1 Score: 94.0 bits (232), Expect = 4.450e-20
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    4 SVSRGPPPRAPFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVF 327
            S  RG   + PF+ ++ GT FVVD FR+    G    FLSHFH DH+VGL + ++  IY + +TA LVK R+ V +  +H L  + E   V GV V +L ANHCPGAV+F+F
Sbjct:  964 SYGRGQQKQCPFYKKIQGTSFVVDAFRYGDIPGCNAYFLSHFHYDHYVGLTRHFQHPIYCSKITANLVKARIKVASKWLHDLPMN-EPCVVNGVEVTLLEANHCPGAVLFLF 1074
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: UPI00193CB919 (DNA cross-link repair protein SNM1-like isoform X1 n=2 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193CB919)

HSP 1 Score: 93.6 bits (231), Expect = 5.880e-20
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:   22 PPRAPFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            P   PF+ R+P T+FVVD F++    G    FLSHFHSDH++GL + +   IY + +TA LVK +LGV    I+++  + E   V GV V  L ANHCPG+VM +F+
Sbjct:  418 PKVCPFYKRIPDTNFVVDAFQYGSIPGVQAYFLSHFHSDHYIGLRKGFSHPIYCSKITANLVKMKLGVNERYINVINLN-ERTVVNGVEVVALDANHCPGSVMLLFQ 523
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: A0A6I9L792_PERMB (DNA cross-link repair 1A n=4 Tax=Peromyscus TaxID=10040 RepID=A0A6I9L792_PERMB)

HSP 1 Score: 93.6 bits (231), Expect = 5.990e-20
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:   34 PFFHRVPGTDFVVDGFRWRPRLG----FLSHFHSDHFVGLHQEYRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFR 330
            PF+ R+PGT F VD F++    G    FL+HFHSDH+ GL +++   IY + +T  L+K++L V+   +H L  D  E  V+GV V +L ANHCPGAVM +FR
Sbjct:  684 PFYKRIPGTGFTVDAFQYGEVAGCTAYFLTHFHSDHYAGLSKDFTLPIYCSEITGNLLKKKLRVQEQYVHQLPMD-TECTVDGVKVVLLDANHCPGAVMVLFR 785
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BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Match: A0A150GC40_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GC40_GONPE)

HSP 1 Score: 87.0 bits (214), Expect = 7.750e-20
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   49 VPGTDFVVDGFRWRP---RLGFLSHFHSDHFVGLHQEYRG-MIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANHCPGAVMFVFRV 333
            +PGTDF+VDGF ++    R  FL+HFHSDH VGL + +RG +IY + +TARL+   +G++   +  L + G    +E V V  L ANHCPGAVMF+F V
Sbjct:   11 IPGTDFIVDGFAFQSPKCRHYFLTHFHSDHTVGLSRSFRGGIIYCSPVTARLLIHDMGMRPQVVRPL-EVGVPVIIESVRVTPLDANHCPGAVMFLFEV 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89407.20724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B4B212_9GOBI5.630e-2247.79DNA cross-link repair 1A (PSO2 homolog, S. cerevis... [more]
A0A8J9ZN42_BRALA7.670e-2248.57DCLRE1A protein n=1 Tax=Branchiostoma lanceolatum ... [more]
UPI0008F98E5A1.050e-2149.11DNA cross-link repair 1A protein-like n=1 Tax=Bemi... [more]
C3Y3U3_BRAFL1.820e-2147.62Lactamase_B domain-containing protein n=2 Tax=Bran... [more]
UPI001603F1E04.930e-2147.62DNA cross-link repair protein SNM1-like n=1 Tax=Br... [more]
A0A7S3GK57_9EUKA2.830e-2044.86Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
UPI001455670C4.450e-2046.43uncharacterized protein LOC117294691 n=1 Tax=Aster... [more]
UPI00193CB9195.880e-2045.79DNA cross-link repair protein SNM1-like isoform X1... [more]
A0A6I9L792_PERMB5.990e-2046.60DNA cross-link repair 1A n=4 Tax=Peromyscus TaxID=... [more]
A0A150GC40_GONPE7.750e-2048.48Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89407contigM-pyrifera_M_contig89407:467..799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score97.1
Seed ortholog evalue5.7e-18
Seed eggNOG ortholog7739.XP_002608959.1
KEGG koko:K15340
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000726,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008409,GO:0009987,GO:0016043,GO:0016233,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0031848,GO:0031974,GO:0031981,GO:0032200,GO:0033554,GO:0034641,GO:0035312,GO:0036297,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
EggNOG free text desc.protection from non-homologous end joining at telomere
EggNOG OGs38HCF@33154,3BB6K@33208,3D188@33213,484P7@7711,COG1236@1,KOG1361@2759
COG Functional cat.L
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.3049145-CDS-M-pyrifera_M_contig89407:466..7991622816804.3049145-CDS-M-pyrifera_M_contig89407:466..799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89407 467..799 +
1692278188.420563-CDS-M-pyrifera_M_contig89407:466..7991692278188.420563-CDS-M-pyrifera_M_contig89407:466..799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89407 467..799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89407.20724.1prot_M-pyrifera_M_contig89407.20724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89407 467..799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89407.20724.1

>prot_M-pyrifera_M_contig89407.20724.1 ID=prot_M-pyrifera_M_contig89407.20724.1|Name=mRNA_M-pyrifera_M_contig89407.20724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
ASVSRGPPPRAPFFHRVPGTDFVVDGFRWRPRLGFLSHFHSDHFVGLHQE
YRGMIYTTALTARLVKRRLGVKNSQIHILRDDGEEEDVEGVGVRVLPANH
CPGAVMFVFRV
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mRNA from alignment at M-pyrifera_M_contig89407:467..799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89407.20724.1 ID=mRNA_M-pyrifera_M_contig89407.20724.1|Name=mRNA_M-pyrifera_M_contig89407.20724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig89407:467..799+ (Macrocystis pyrifera P11B4 male)
GCAAGTGTTTCTCGTGGACCACCACCTCGTGCACCATTCTTTCATCGTGT
ACCAGGAACTGATTTTGTTGTGGATGGGTTTCGTTGGAGACCAAGACTTG
GGTTTTTGTCTCATTTCCATTCTGACCACTTTGTAGGTCTCCACCAAGAG
TATCGAGGGATGATATACACCACAGCATTGACTGCTCGTCTTGTAAAGCG
ACGTCTTGGTGTGAAAAACTCTCAAATACACATTCTACGTGACGATGGGG
AAGAAGAAGATGTTGAAGGTGTAGGAGTGAGAGTTTTACCAGCCAATCAT
TGTCCAGGAGCGGTGATGTTTGTTTTCCGAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89407:467..799+

>mRNA_M-pyrifera_M_contig89407.20724.1 ID=mRNA_M-pyrifera_M_contig89407.20724.1|Name=mRNA_M-pyrifera_M_contig89407.20724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig89407:467..799+ (Macrocystis pyrifera P11B4 male)
GCAAGTGTTTCTCGTGGACCACCACCTCGTGCACCATTCTTTCATCGTGT
ACCAGGAACTGATTTTGTTGTGGATGGGTTTCGTTGGAGACCAAGACTTG
GGTTTTTGTCTCATTTCCATTCTGACCACTTTGTAGGTCTCCACCAAGAG
TATCGAGGGATGATATACACCACAGCATTGACTGCTCGTCTTGTAAAGCG
ACGTCTTGGTGTGAAAAACTCTCAAATACACATTCTACGTGACGATGGGG
AAGAAGAAGATGTTGAAGGTGTAGGAGTGAGAGTTTTACCAGCCAATCAT
TGTCCAGGAGCGGTGATGTTTGTTTTCCGAGTGGCAAGTGTTTCTCGTGG
ACCACCACCTCGTGCACCATTCTTTCATCGTGTACCAGGAACTGATTTTG
TTGTGGATGGGTTTCGTTGGAGACCAAGACTTGGGTTTTTGTCTCATTTC
CATTCTGACCACTTTGTAGGTCTCCACCAAGAGTATCGAGGGATGATATA
CACCACAGCATTGACTGCTCGTCTTGTAAAGCGACGTCTTGGTGTGAAAA
ACTCTCAAATACACATTCTACGTGACGATGGGGAAGAAGAAGATGTTGAA
GGTGTAGGAGTGAGAGTTTTACCAGCCAATCATTGTCCAGGAGCGGTGAT
GTTTGTTTTCCGAGTG
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