mRNA_M-pyrifera_M_contig8940.20719.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8940.20719.1
Unique NamemRNA_M-pyrifera_M_contig8940.20719.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.360e-50
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:   19 RRWIKDMKAGQKVIGYVSDTTDFAAFVDVGVVRQGAKGKVMPVTGFLHQSEIRNPYALEGSGRAKSCEVEVKKGIHLTAYVKDVFPNAGRLTLSLDPEMNKDKV 330
            RRWIK++K G KVIGYV+DTT+FAAFVD  VVRQG+K K++PVTGFLH ++I+ PYALEG+   K CEVEVKKGIHLTAYVKDVFPNAGR+TLSLDP +NKDKV
Sbjct:  118 RRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKV 221
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BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.500e-15
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   28 IKDMKAGQKVIGYVSDTTDFAAFVDVGVVRQGAKGKVMPVTGFLHQSEIRNPYALEGSGRAKSCEVE-----VKKGIHLTAYVKDVFPNAGRLTLSLDPEMNKDKV 330
            ++ ++ G ++ G V   T+FAAF+DV VVR+G  GK++     LH  ++     L      +   +E     +++GIH++ YVKDVFPN+GR +++LDP ++K KV
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKV 210
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BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 79.3 bits (194), Expect = 5.460e-15
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   28 IKDMKAGQKVIGYVSDTTDFAAFVDVGVVRQGAKGKVMPVTGFLHQSEIRNPYALEGSGRAKSCEVE-----VKKGIHLTAYVKDVFPNAGRLTLSLDPEMNKDKV 330
            ++ ++ G ++ G V   T+FAAF+DV VVR+G  GK++     LH  ++     L      +   +E     +++GIH++ YVKDVFPN+GR +++LDP ++K KV
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKV 210
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BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-14
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:   25 WIKDMKAGQKVIGYVSDTTDFAAFVDVGVVRQGAKGKVMPVTGFLHQSEIRNPYALEGSGRAKSCEVEVKKGIHLTAYVKDVFPNAGRLTLSLDPEMNKDKV 330
            W+K +K G    G V   T+F  F++ G+VR G KG V  V G LH++++     +    R K+ +V ++KG+ +  YVK VFP +GR +L++DP + + K+
Sbjct:  140 WLKTLKTGMPFYGGVKSVTNFGVFLECGIVRPGRKGTVTRVQGMLHKTDLAPSMKVPFQYRPKATKV-LEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAKL 240
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BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.560e-7
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:  118 QGAKGKVMPVTGFLHQSEIRNP-----------YALEGSGRAKSCEVEVKKGIHLTAYVKDVFPNAGRLTLSLDPEMNKDK 327
            +GA GK+ P  GFLH+S+I                        +    +KKG H++ YVKDVFPN+GR T++LDP + + K
Sbjct:  147 RGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 227
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BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Match: A0A7C7QV79_9CHLR (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QV79_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 1.510e-5
Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:   19 RRWIKDMKAGQKVIGYVSDTTDFAAFVDVGVVRQGAKGKVMPVTGFLHQSEIRNPYALEGSGRAKSCEVEVKKGIHLTAYVKDVFPNAGRLTLSL-DPEMNKDK 327
            ++ +K +  G KV G V++ T+F AFVD+GV R G           +H SE+R     +GSG        +  G  +T ++KD+     R++L++ +P   K K
Sbjct:   14 KKVVKTLSKGMKVTGKVTNVTEFGAFVDIGVGRDG----------LIHISELRRQGGGQGSGT-------ISTGDEVTVWIKDLDRKRNRISLTMREPARRKLK 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8940.20719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJQ8_ECTSI5.360e-5075.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TQN5_9STRA2.500e-1536.79Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC5.460e-1536.79UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S2UWN5_9STRA1.260e-1436.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YYC3_9STRA2.560e-737.04S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A7C7QV79_9CHLR1.510e-530.77S1 RNA-binding domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8940contigM-pyrifera_M_contig8940:10176..11201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOB-fold nucleic-acid-binding protein
Ec32 orthologEc-06_010560.1
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.1142073-CDS-M-pyrifera_M_contig8940:10175..103041622816804.1142073-CDS-M-pyrifera_M_contig8940:10175..10304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8940 10176..10304 +
1692278188.3494542-CDS-M-pyrifera_M_contig8940:10175..103041692278188.3494542-CDS-M-pyrifera_M_contig8940:10175..10304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8940 10176..10304 +
1622816804.1250246-CDS-M-pyrifera_M_contig8940:11000..112011622816804.1250246-CDS-M-pyrifera_M_contig8940:11000..11201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8940 11001..11201 +
1692278188.3592906-CDS-M-pyrifera_M_contig8940:11000..112011692278188.3592906-CDS-M-pyrifera_M_contig8940:11000..11201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8940 11001..11201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8940.20719.1prot_M-pyrifera_M_contig8940.20719.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8940 10176..11201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8940.20719.1

>prot_M-pyrifera_M_contig8940.20719.1 ID=prot_M-pyrifera_M_contig8940.20719.1|Name=mRNA_M-pyrifera_M_contig8940.20719.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
AATDNERRWIKDMKAGQKVIGYVSDTTDFAAFVDVGVVRQGAKGKVMPVT
GFLHQSEIRNPYALEGSGRAKSCEVEVKKGIHLTAYVKDVFPNAGRLTLS
LDPEMNKDKV
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mRNA from alignment at M-pyrifera_M_contig8940:10176..11201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8940.20719.1 ID=mRNA_M-pyrifera_M_contig8940.20719.1|Name=mRNA_M-pyrifera_M_contig8940.20719.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig8940:10176..11201+ (Macrocystis pyrifera P11B4 male)
GCCGCCACCGACAACGAGCGACGATGGATCAAGGATATGAAGGCCGGGCA
GAAAGTGATCGGCTATGTCTCGGACACGACCGATTTCGCGGCGTTTGTGG
ACGTCGGGGTCGTGCGGCAGGGGGCGAAGGTGGGGGGTATTCAAGCAGTA
GTACTGCTGTCGTACTCTGTAGTGTGAGTCGGTGTCCGGTGGGGCCTACC
TTCTGCTACCAGGTTTGATGATACTTGTAAGTGCACAACTTGGGAACTTG
TATCATGGCGTACGTGGGCAACGACCCAATGAAAACATAGATCAGAGATT
AGCCTTCGGCCTCGACGTCGAGATGCTCCCGTACAAAGTACGCCCGTTTT
CCCGATCTACCATTCAACCTCAATGTACAGCACTATAGACAATACGACAG
GCAACCGGCTTACCTTGGGGTCACACCCACAATAATACTATTTTGAATAT
TAAAAATACTTCTAACTGGTACGTATTCTTTGTATATCGCATGTACCAGA
TATGGTTGTTTTTGTAACGTCAGCGCGTATGTTAGCGAGCTTTGTCATCG
AGACTCGAGAGGAGTGTCCCGAGCCCCAGGAGCATCGAAAGCTGCCACCG
CGGAGTACCGGACTTGGGCGCGTAAACGCTCGTCTCCGCACGATCGGTTT
TCACACCACGACAAATCAACAAGTTTTCTCGGTACCTTGGGATTTGCGGT
TGGCGTTGAGCATTTCATACGTCAAAGTATATTTTACCGCAATTTCCCTT
TTTTTTTGTGACGGACTCCGTGTCTACACACGCCTCTCTGATCGATGGCA
AACCCGGCCCGTCGTCGTCTTACAGGGCAAGGTTATGCCGGTGACGGGCT
TCCTGCACCAATCAGAAATAAGGAATCCGTACGCCTTGGAGGGCAGCGGT
CGCGCGAAGAGCTGTGAAGTCGAGGTGAAGAAAGGCATTCATCTCACGGC
CTACGTCAAGGACGTCTTCCCCAACGCGGGACGCTTAACCTTGTCGCTCG
ACCCGGAAATGAACAAGGACAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8940:10176..11201+

>mRNA_M-pyrifera_M_contig8940.20719.1 ID=mRNA_M-pyrifera_M_contig8940.20719.1|Name=mRNA_M-pyrifera_M_contig8940.20719.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig8940:10176..11201+ (Macrocystis pyrifera P11B4 male)
GCCGCCACCGACAACGAGCGACGATGGATCAAGGATATGAAGGCCGGGCA
GAAAGTGATCGGCTATGTCTCGGACACGACCGATTTCGCGGCGTTTGTGG
ACGTCGGGGTCGTGCGGCAGGGGGCGAAGGCCGCCACCGACAACGAGCGA
CGATGGATCAAGGATATGAAGGCCGGGCAGAAAGTGATCGGCTATGTCTC
GGACACGACCGATTTCGCGGCGTTTGTGGACGTCGGGGTCGTGCGGCAGG
GGGCGAAGGGCAAGGTTATGCCGGTGACGGGCTTCCTGCACCAATCAGAA
ATAAGGAATCCGTACGCCTTGGAGGGCAGCGGTCGCGCGAAGAGCTGTGA
AGTCGAGGTGAAGAAAGGCATTCATCTCACGGCCTACGTCAAGGACGTCT
TCCCCAACGCGGGACGCTTAACCTTGTCGCTCGACCCGGAAATGAACAAG
GACAAGGTGGGCAAGGTTATGCCGGTGACGGGCTTCCTGCACCAATCAGA
AATAAGGAATCCGTACGCCTTGGAGGGCAGCGGTCGCGCGAAGAGCTGTG
AAGTCGAGGTGAAGAAAGGCATTCATCTCACGGCCTACGTCAAGGACGTC
TTCCCCAACGCGGGACGCTTAACCTTGTCGCTCGACCCGGAAATGAACAA
GGACAAGGTG
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