mRNA_M-pyrifera_M_contig8939.20714.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8939.20714.1
Unique NamemRNA_M-pyrifera_M_contig8939.20714.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8939.20714.1 vs. uniprot
Match: A0A6H5JLT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.690e-23
Identity = 73/169 (43.20%), Postives = 96/169 (56.80%), Query Frame = 1 
Query:   25 LYCSAREAIKEAAAAPAASPVPGGSGKHNDEATPGRPE----LELHLERLVQETHHSSVVAQ--------------------ERPDVSRRARQDSGHEQEAASIGEAGDTVEAGEDECLGVLAEAFADELDDLRKDEHFRGSARDVDAMADMMRCLAGGLDVTEQRLLL 459
            LY +AR+AI++A+A  AA+     +G+  D     RP+    L+  L R V+E + S+   Q                    +R D   +  +D+G     AS GE G      EDECLG++AEAFAD+LD LRKDEHF GSA D+ AMADMMRC+AGGLD  EQR+LL
Sbjct:   10 LYDAARQAIRDASAGGAATEA---AGRDQDAYVAKRPQHNDLLDKKLHRSVEEMYQSTRGEQNSAQGTQDVQFSGISGNKKRQRHDEVEKPAEDAGD----ASGGEEGHATTQ-EDECLGLMAEAFADDLDLLRKDEHFGGSANDIAAMADMMRCIAGGLDSIEQRMLL 170
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BLAST of mRNA_M-pyrifera_M_contig8939.20714.1 vs. uniprot
Match: D8LNF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-17
Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:   25 LYCSAREAIKEAAAAPAASPVPGGSGKHNDEATPGRPE----LELHLERLVQETHHSS-----VVAQERPDVSRRARQDSG--------HEQEAASIGEAGDTVEAGE-------DECLGVLAEAFADELDDLRKDEHFRGSARDVDAMADMMR 414
            LY +AREAI++A+A  AA+      G+  D     RP+    L+  L R V+E +HS+        Q  PDV   A  DSG        H+ E A   +AGD  +  E       DECLG++AEAFAD+LD LRKD+HF GSA D+ AMADMMR
Sbjct:   10 LYDAAREAIRDASAGGAAAEA---VGRDQDACVATRPQHDDVLDKKLHRSVEEMYHSTRGQQNSSTQGTPDVQLSA-SDSGVGNKKRQRHDGEEAPTEDAGDASDGEEGHPTTQEDECLGLMAEAFADDLDLLRKDDHFGGSANDIAAMADMMR 159
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8939.20714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLT0_9PHAE4.690e-2343.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNF4_ECTSI1.950e-1743.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8939contigM-pyrifera_M_contig8939:1365..2861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004060.1
Exons2
Model size471
Cds size471
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.7889335-CDS-M-pyrifera_M_contig8939:1364..14221622816803.7889335-CDS-M-pyrifera_M_contig8939:1364..1422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8939 1365..1422 -
1692278188.1484337-CDS-M-pyrifera_M_contig8939:1364..14221692278188.1484337-CDS-M-pyrifera_M_contig8939:1364..1422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8939 1365..1422 -
1622816803.8016944-CDS-M-pyrifera_M_contig8939:2448..28611622816803.8016944-CDS-M-pyrifera_M_contig8939:2448..2861Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8939 2449..2861 -
1692278188.1610503-CDS-M-pyrifera_M_contig8939:2448..28611692278188.1610503-CDS-M-pyrifera_M_contig8939:2448..2861Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8939 2449..2861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8939.20714.1prot_M-pyrifera_M_contig8939.20714.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8939 1365..2861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8939.20714.1

>prot_M-pyrifera_M_contig8939.20714.1 ID=prot_M-pyrifera_M_contig8939.20714.1|Name=mRNA_M-pyrifera_M_contig8939.20714.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MAAAPYWGLYCSAREAIKEAAAAPAASPVPGGSGKHNDEATPGRPELELH
LERLVQETHHSSVVAQERPDVSRRARQDSGHEQEAASIGEAGDTVEAGED
ECLGVLAEAFADELDDLRKDEHFRGSARDVDAMADMMRCLAGGLDVTEQR
LLLGTR*
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mRNA from alignment at M-pyrifera_M_contig8939:1365..2861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8939.20714.1 ID=mRNA_M-pyrifera_M_contig8939.20714.1|Name=mRNA_M-pyrifera_M_contig8939.20714.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at M-pyrifera_M_contig8939:1365..2861- (Macrocystis pyrifera P11B4 male)
ATGGCGGCTGCACCTTATTGGGGTCTCTATTGCAGCGCGCGAGAAGCAAT
TAAGGAGGCAGCAGCAGCACCAGCAGCATCGCCAGTTCCAGGAGGATCAG
GCAAACACAATGACGAAGCCACCCCAGGCCGACCAGAGCTAGAACTGCAT
CTAGAACGCCTGGTGCAAGAGACGCATCACAGCAGTGTCGTCGCCCAGGA
GCGGCCCGACGTCTCGAGACGCGCAAGACAGGACAGCGGTCACGAGCAGG
AAGCGGCATCAATTGGGGAGGCCGGGGATACTGTCGAGGCGGGAGAGGAC
GAGTGCTTGGGGGTTTTAGCGGAGGCGTTTGCGGATGAGCTAGACGATCT
TCGTAAGGACGAGCACTTCCGGGGGTCGGCTAGGGACGTGGACGCAATGG
CGGATATGATGCGGTGAGAGATACGATGGGGTTCAGGGCTACATGCTGTT
TCGGGTGTCATTGCGAGAGGTGTTTCAGGCAGATCGCTTGTAGGGGCGGG
GAGCGATCTACTGCTGCAGGTGAATTGTCAGAGGCAAACGAAGAAACGAA
TTACCCCCATGATCAGACAAACGCAGCCACACGTATTTTCGTTTTGGGGG
TAATAACAATACCATAAGCGGTTTTTTTTTTACCCAGATCTCCAAGGAAG
ATAAAAAAACATAAGCGGTTTCACAGCAGCAGTATTGATGCACTCTTGTT
ATATATACAAGGTGTGTCGTATCGCATCATATTTTACGACGAAAAGTAAA
GGTTCAAAATGAATCGTACCTGGTACGCACGAGTATCCAATTCGTCATCC
ATGACAACCTAACTTTTCGAGATCCAAGAAGTGCAGGGAGGCCCTACGAG
TGATGGTTGAGCATATGCTGCCGCAAGCAGCCGTCAACTCAACATCTAGG
CACTCGTGTATTTTACTATACGTAACGAGGTGGATCCCTTAGAAGCATGT
ACATACCAGGAAAGCTTTCATGTACGTCCCGCGTGTAGGAGGCGTTTTTG
GAATAACCCAGGTCCATGGTCATTCTAATAACCCCCTCCCCCCCCCCCTT
GAGGCCACACCAGGAAAAAATACATCGAACTCGAAGCTGTCACCCAATGC
AAGAAGGCCCGCCTCAAAAGAGGTTCTTAGTGTTGATACGTAGGAAGCAG
CTTTTACCCCCCCATGCGACTCGCCCAACACCCCACGGCTTTTCGCAAAG
CTTGGTGCAAGCAAATGTCAGCCTGGTCGGTGAAAACCCGACGTTCTCCG
TCCCAGCATTACAGGAATGCGAGGGTCTATGGTCGTACGACTGCGGTCAT
GCATGCCATGAGTACCCCCCGCCCTTTCTTTACCCACTCTACGCTTGAGG
GGTGTGCCGATTAAACGCGTTGACTTGAGACACTCCCTGCGCGTGACCCC
ACGCCCCACGCCGACGCGTCAACGATTACTATTGCGCAGGTGTCTGGCGG
GTGGACTGGATGTCACAGAGCAGAGGCTGCTCTTGGGGACGCGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8939:1365..2861-

>mRNA_M-pyrifera_M_contig8939.20714.1 ID=mRNA_M-pyrifera_M_contig8939.20714.1|Name=mRNA_M-pyrifera_M_contig8939.20714.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig8939:1365..2861- (Macrocystis pyrifera P11B4 male)
ATGGCGGCTGCACCTTATTGGGGTCTCTATTGCAGCGCGCGAGAAGCAAT
TAAGGAGGCAGCAGCAGCACCAGCAGCATCGCCAGTTCCAGGAGGATCAG
GCAAACACAATGACGAAGCCACCCCAGGCCGACCAGAGCTAGAACTGCAT
CTAGAACGCCTGGTGCAAGAGACGCATCACAGCAGTGTCGTCGCCCAGGA
GCGGCCCGACGTCTCGAGACGCGCAAGACAGGACAGCGGTCACGAGCAGG
AAGCGGCATCAATTGGGGAGGCCGGGGATACTGTCGAGGCGGGAGAGGAC
GAGTGCTTGGGGGTTTTAGCGGAGGCGTTTGCGGATGAGCTAGACGATCT
TCGTAAGGACGAGCACTTCCGGGGGTCGGCTAGGGACGTGGACGCAATGG
CGGATATGATGCGATGGCGGCTGCACCTTATTGGGGTCTCTATTGCAGCG
CGCGAGAAGCAATTAAGGAGGCAGCAGCAGCACCAGCAGCATCGCCAGTT
CCAGGAGGATCAGGCAAACACAATGACGAAGCCACCCCAGGCCGACCAGA
GCTAGAACTGCATCTAGAACGCCTGGTGCAAGAGACGCATCACAGCAGTG
TCGTCGCCCAGGAGCGGCCCGACGTCTCGAGACGCGCAAGACAGGACAGC
GGTCACGAGCAGGAAGCGGCATCAATTGGGGAGGCCGGGGATACTGTCGA
GGCGGGAGAGGACGAGTGCTTGGGGGTTTTAGCGGAGGCGTTTGCGGATG
AGCTAGACGATCTTCGTAAGGACGAGCACTTCCGGGGGTCGGCTAGGGAC
GTGGACGCAATGGCGGATATGATGCGGTGTCTGGCGGGTGGACTGGATGT
CACAGAGCAGAGGCTGCTCTTGGGGACGCGATAAGTGTCTGGCGGGTGGA
CTGGATGTCACAGAGCAGAGGCTGCTCTTGGGGACGCGATAA
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