mRNA_M-pyrifera_M_contig89284.20695.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89284.20695.1
Unique NamemRNA_M-pyrifera_M_contig89284.20695.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A812WPS1_9DINO (T-complex protein 1 subunit delta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WPS1_9DINO)

HSP 1 Score: 300 bits (769), Expect = 8.350e-97
Identity = 144/223 (64.57%), Postives = 184/223 (82.51%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSM 669
            +Y+LGMCKKIK SGCNVLLVQKSILRDA+N+ +LHFLAK  IMV+  +ERD+I+FI++T G +P+AHVD  TPDKLG A LA E  +G+G +V+KITG A   +TVSLLVRGSN LVL+E++RSIHDALCVVR++VK++FLI GGG PEIE A  L++WS T+ G +++C +AFA+A+E+IPYTLAENAG+HPI IVTELR+RHA G+  AGINV+   I  +
Sbjct:  263 KYILGMCKKIKKSGCNVLLVQKSILRDALNEWSLHFLAKLGIMVVRDVERDDIEFISKTLGCKPIAHVDHMTPDKLGSAALAEEVSVGSGNKVIKITGVANPGRTVSLLVRGSNKLVLDETERSIHDALCVVRSIVKRRFLITGGGIPEIEVARELASWSTTLHGQESYCVRAFADAMEIIPYTLAENAGLHPIEIVTELRKRHAEGDVTAGINVKRGVISDI 485
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A5A8CF27_CAFRO (T-complex protein 1 subunit delta n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8CF27_CAFRO)

HSP 1 Score: 299 bits (766), Expect = 6.130e-96
Identity = 145/223 (65.02%), Postives = 183/223 (82.06%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSM 669
            +++L +CK IKASGCNVLLVQKSILRDA+ D++LH+LAK KIMV+T +ERD+I+F+++T GARPVAH+D  TP+KLG A+LA E     G+R+VKITG      TV LLVRGSN LVL+E++RS+HDALCVVRA+VKK+ LI GGGAPE E AL L+ W+ T++G+ + C +AFAEALEVIPYTLAENAG++PIHIVTELR+RHA G   AGINVR+ CI  +
Sbjct:  298 KHILKLCKAIKASGCNVLLVQKSILRDAVTDLSLHYLAKMKIMVVTNVERDDIEFVSKTVGARPVAHIDHLTPEKLGSADLAEEVSTDGGKRIVKITGVPKPCPTVCLLVRGSNKLVLDEAERSMHDALCVVRAIVKKRALIVGGGAPETEVALKLTEWANTLTGMSSVCTRAFAEALEVIPYTLAENAGLYPIHIVTELRKRHAEGCSTAGINVRSGCISDL 520
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: D8M6E9_BLAHO (T-complex protein 1 subunit delta n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6E9_BLAHO)

HSP 1 Score: 297 bits (760), Expect = 2.550e-95
Identity = 150/223 (67.26%), Postives = 181/223 (81.17%), Query Frame = 1 
Query:    4 YVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSMK 672
            Y+L MCKKIK +GCNVLLVQKSILRDA+N+++LHFL+K KI+VL+ IERD+IDFIART   RP+AH+DSFTPDKLG A+L  E +L +GRR+ +ITG   A  TVS+L+RGSNNLVL+ESDRS+HDALCVVR LVKK FL+ GGGAPE E  +    W+  + G D   A+AFAEALEV+PYTLAENAGMH I  VTELR+RHA+GEK AGI+V+  CIG MK
Sbjct:  276 YILNMCKKIKQAGCNVLLVQKSILRDAVNELSLHFLSKLKILVLSNIERDDIDFIARTLHCRPIAHIDSFTPDKLGHADLVEEVEL-DGRRITQITG-VPASDTVSVLLRGSNNLVLDESDRSLHDALCVVRCLVKKPFLLVGGGAPESEVFVEFQKWAGFLEGADRIIARAFAEALEVVPYTLAENAGMHAIQQVTELRQRHAMGEKTAGIDVKRGCIGDMK 496
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: UPI000711C09A (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C09A)

HSP 1 Score: 300 bits (769), Expect = 1.040e-93
Identity = 149/223 (66.82%), Postives = 181/223 (81.17%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSM 669
            +Y+L MCKKIK +GCNV+LVQKSILRDA+N+++LHFL+K KIMV++ IERD+I+FI+RT G RPVAH+DSFT DKLG A+L  E DL  GR++ KITG A   KTVSLL+RGSN LVL+ES+RS+HDALCVVR LVKK FL  GGGAPE E       W +T++G D + A+AFAEALE+IPYTLAENAG+HPI IVTELR+RH  GEK AGI+V+  CIG M
Sbjct:  275 KYILEMCKKIKKTGCNVILVQKSILRDAVNELSLHFLSKLKIMVISDIERDDIEFISRTLGCRPVAHIDSFTEDKLGHADLVEEVDL-EGRKITKITGVANPGKTVSLLLRGSNKLVLDESERSLHDALCVVRCLVKKSFLTVGGGAPESEVYAEFQKWIQTLTGADRYIARAFAEALEIIPYTLAENAGLHPISIVTELRQRHLAGEKYAGIDVKKGCIGDM 496
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: W7T7M9_9STRA (T-complex protein 1 subunit delta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7M9_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.420e-93
Identity = 147/224 (65.62%), Postives = 177/224 (79.02%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDL-GNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSM 669
            +Y+L + KKIK SGCNVLLVQKSILRDA ND++LHFLAK  IMV+T +ER +++FI RT G  PVAH+DSFTPDKLG AEL TE  + G   +VVK+TG      T+S+L+RGSN LVLEE+DRS+HDALCVVR+LVKK+FLI GGGA E E  LGL+ WSK  +G+ A+C  AFA++LEV+PYTLAEN G++PI IVTELRRRHA GEK  GINVR S I  M
Sbjct:  292 KYILNLVKKIKKSGCNVLLVQKSILRDAYNDLSLHFLAKMDIMVITEVERTDVEFIQRTLGCMPVAHIDSFTPDKLGSAELVTEVTVPGGSHKVVKVTGVQNPGSTMSILIRGSNKLVLEEADRSLHDALCVVRSLVKKRFLIAGGGAAETEVNLGLTEWSKMQAGMKAYCVAAFAQSLEVVPYTLAENGGLNPIAIVTELRRRHAGGEKGTGINVRQSNISDM 515
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A8B7X3U6_MICMU (T-complex protein 1 subunit delta-like n=1 Tax=Microcebus murinus TaxID=30608 RepID=A0A8B7X3U6_MICMU)

HSP 1 Score: 282 bits (722), Expect = 1.860e-93
Identity = 138/219 (63.01%), Postives = 179/219 (81.74%), Query Frame = 1 
Query:    4 YVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCI 660
            Y+L + K+IK +GCNVLL+QKSILRDA++D+ALHFL K KIMV+  IER++I+FI +T G +PVAH+D FT D LG AELA E +L    +++KITGCA+  KTV+++VRGSN LV+EE++RSIHDALCV+R LVKK+ LI GGGAPEIE AL L+ +S+T+SG++++C +AFA+A+EVIP TLAENAG++PI  VTELR RHA GEK  GINVR   I
Sbjct:   23 YILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKVII 241
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A7S2W2D7_9STRA (T-complex protein 1 subunit delta n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2D7_9STRA)

HSP 1 Score: 291 bits (746), Expect = 2.740e-93
Identity = 149/220 (67.73%), Postives = 178/220 (80.91%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCI 660
            +Y+L +CKKIK SGCNVLLVQKSILRDA ND++LHFLAK KIMV+  +ER +I+FI+RT G  PVAHVDSF P+KLG A+L  E  LG+GR V+K+TGC  + KTV++L RGSN LVL E+DRS+HDALCVVR LVKK+FLI GGGAPE E AL LS ++KT+ G    C KAFAEALEV+PYTLAENAG++PI+IVTELRR+HA G   AGINVR   I
Sbjct:  269 KYILKLCKKIKDSGCNVLLVQKSILRDATNDLSLHFLAKMKIMVIKDVERTDIEFISRTVGCLPVAHVDSFLPEKLGHAKLVEEVSLGSGR-VIKVTGCPNSGKTVTVLCRGSNKLVLGEADRSLHDALCVVRCLVKKRFLIVGGGAPEAELALRLSQYAKTLKGQSQFCVKAFAEALEVVPYTLAENAGLNPINIVTELRRQHAEGCATAGINVRTGKI 487
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A197K1G4_9FUNG (T-complex protein 1 subunit delta n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197K1G4_9FUNG)

HSP 1 Score: 289 bits (740), Expect = 6.840e-93
Identity = 147/220 (66.82%), Postives = 181/220 (82.27%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCI 660
            +Y+L M KKIK SGCNVLL+QKSILRDA+ND++LHFLAK KIMV+  IERDEI+FI ++TG +P+A +DSFT DKLG A+L  +E   +G RVVK+TG   A KTVS+L  G+N+LVLEE++RS+HDALCV+R LVKKK+LI GGGAPEIE +L L  ++KT+ G++AHC +AFAEALEVIP TLAENAG++PI IVTELR RHALGE  AGINVR   I
Sbjct:  227 QYLLNMVKKIKKSGCNVLLIQKSILRDAVNDLSLHFLAKLKIMVVKDIERDEIEFICKSTGCKPIADIDSFTEDKLGYADLI-DEVQASGSRVVKVTGVKHAGKTVSILCHGANSLVLEEAERSLHDALCVIRCLVKKKYLIAGGGAPEIEVSLRLQEYAKTLRGMEAHCFQAFAEALEVIPITLAENAGLNPIAIVTELRNRHALGETTAGINVRKGAI 445
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A196SKI0_BLAHN (T-complex protein 1 subunit delta n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKI0_BLAHN)

HSP 1 Score: 290 bits (742), Expect = 1.320e-92
Identity = 142/224 (63.39%), Postives = 180/224 (80.36%), Query Frame = 1 
Query:    1 RYVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSMK 672
            +Y+L MCKKIK +GCNV+LVQKSILRDA+N+++LHFL+K KIMV++ IERD+++FI+RT G RP+AH+DSFT DKLG A+   E +L  G+R+ KITG A   KTV++L+RGSNNLVL+ESDRS+HDALCVVR LVKK  L+ GGGAPE E       W +++SG D + A+A+AEALE+IPYTLAENAG+HPI IVTELR+RH  GE  AGI+V+  CI  MK
Sbjct:  275 KYILEMCKKIKKTGCNVILVQKSILRDAVNELSLHFLSKLKIMVISDIERDDVEFISRTLGCRPIAHIDSFTEDKLGHADCVEEVEL-EGKRITKITGVANPGKTVTVLLRGSNNLVLDESDRSLHDALCVVRCLVKKPSLLVGGGAPESEVFSQFQEWIQSLSGSDRYIARAYAEALEIIPYTLAENAGLHPIRIVTELRQRHQRGETFAGIDVKKGCISDMK 497
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BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Match: A0A2P4SD08_BAMTH (T-complex protein 1 subunit delta (Fragment) n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4SD08_BAMTH)

HSP 1 Score: 283 bits (725), Expect = 3.670e-92
Identity = 138/222 (62.16%), Postives = 179/222 (80.63%), Query Frame = 1 
Query:    4 YVLGMCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDFIARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKTVSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALGLSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHALGEKDAGINVRASCIGSM 669
            Y+L + K+IK +GCNVLL+QKSILRDA++D+ALHFL K KIMV+  IER++I+FI +T G +PVAH+D FTPD LG AELA E +L    +++KITGC    KTV+++VRGSN LVLEE++RSIHDALCV+R LVKK+ LI GGGAPEIE AL L+ +++T+ G+D++C +A+ +ALEVIP TLAENAG++PI  VTELR RHA GEK AGINVR   I ++
Sbjct:  108 YILNLVKQIKKAGCNVLLIQKSILRDALSDLALHFLNKVKIMVVKDIEREDIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVNLNGSGKLIKITGCTNPGKTVTIVVRGSNKLVLEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLNEYARTLRGMDSYCVRAYGDALEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNI 329
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89284.20695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812WPS1_9DINO8.350e-9764.57T-complex protein 1 subunit delta n=1 Tax=Symbiodi... [more]
A0A5A8CF27_CAFRO6.130e-9665.02T-complex protein 1 subunit delta n=5 Tax=Sar TaxI... [more]
D8M6E9_BLAHO2.550e-9567.26T-complex protein 1 subunit delta n=1 Tax=Blastocy... [more]
UPI000711C09A1.040e-9366.82hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
W7T7M9_9STRA1.420e-9365.63T-complex protein 1 subunit delta n=2 Tax=Monodops... [more]
A0A8B7X3U6_MICMU1.860e-9363.01T-complex protein 1 subunit delta-like n=1 Tax=Mic... [more]
A0A7S2W2D7_9STRA2.740e-9367.73T-complex protein 1 subunit delta n=1 Tax=labyrint... [more]
A0A197K1G4_9FUNG6.840e-9366.82T-complex protein 1 subunit delta n=2 Tax=Mortiere... [more]
A0A196SKI0_BLAHN1.320e-9263.39T-complex protein 1 subunit delta n=2 Tax=Blastocy... [more]
A0A2P4SD08_BAMTH3.670e-9262.16T-complex protein 1 subunit delta (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89284contigM-pyrifera_M_contig89284:137..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score282.3
Seed ortholog evalue1.9e-73
Seed eggNOG ortholog7739.XP_002613480.1
Preferred nameCCT4
KEGG koko:K09496
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0007275,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009653,GO:0009791,GO:0009886,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010171,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0035036,GO:0040032,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0060341,GO:0061077,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.protein binding involved in protein folding
EggNOG OGs39NW1@33154,3BCK9@33208,3CVW1@33213,47ZFR@7711,COG0459@1,KOG0358@2759
COG Functional cat.O
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons1
Model size672
Cds size657
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.9165635-UTR-M-pyrifera_M_contig89284:136..1511622816802.9165635-UTR-M-pyrifera_M_contig89284:136..151Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89284 137..151 +
1692278187.7175348-UTR-M-pyrifera_M_contig89284:136..1511692278187.7175348-UTR-M-pyrifera_M_contig89284:136..151Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89284 137..151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.9312398-CDS-M-pyrifera_M_contig89284:151..8081622816802.9312398-CDS-M-pyrifera_M_contig89284:151..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89284 152..808 +
1692278187.7306683-CDS-M-pyrifera_M_contig89284:151..8081692278187.7306683-CDS-M-pyrifera_M_contig89284:151..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89284 152..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89284.20695.1prot_M-pyrifera_M_contig89284.20695.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89284 152..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89284.20695.1

>prot_M-pyrifera_M_contig89284.20695.1 ID=prot_M-pyrifera_M_contig89284.20695.1|Name=mRNA_M-pyrifera_M_contig89284.20695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
MCKKIKASGCNVLLVQKSILRDAINDMALHFLAKFKIMVLTRIERDEIDF
IARTTGARPVAHVDSFTPDKLGDAELATEEDLGNGRRVVKITGCATAHKT
VSLLVRGSNNLVLEESDRSIHDALCVVRALVKKKFLIPGGGAPEIECALG
LSAWSKTVSGVDAHCAKAFAEALEVIPYTLAENAGMHPIHIVTELRRRHA
LGEKDAGINVRASCIGSMK
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mRNA from alignment at M-pyrifera_M_contig89284:137..808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89284.20695.1 ID=mRNA_M-pyrifera_M_contig89284.20695.1|Name=mRNA_M-pyrifera_M_contig89284.20695.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig89284:137..808+ (Macrocystis pyrifera P11B4 male)
AGGTACGTGTTGGGGATGTGCAAGAAGATCAAGGCGAGCGGGTGCAACGT
TTTGTTGGTGCAAAAGTCAATTTTGCGTGACGCGATCAACGACATGGCGC
TGCACTTTTTGGCAAAGTTCAAGATCATGGTGCTGACTCGGATCGAGCGG
GACGAGATCGACTTCATCGCGCGCACCACTGGGGCACGGCCGGTGGCGCA
CGTGGACTCCTTCACCCCAGACAAGCTCGGGGATGCAGAGTTGGCGACGG
AGGAGGATTTGGGCAATGGACGGCGTGTGGTGAAGATCACGGGCTGCGCC
ACTGCGCACAAGACCGTGTCTCTCCTTGTGCGAGGCAGCAACAACCTGGT
GCTCGAAGAGTCTGACCGATCCATCCACGACGCACTCTGTGTGGTGCGAG
CCCTGGTGAAGAAGAAGTTCCTCATCCCAGGAGGAGGAGCGCCTGAGATT
GAATGTGCTCTGGGATTGTCCGCATGGAGCAAAACCGTCAGTGGCGTTGA
CGCTCACTGTGCAAAGGCCTTTGCTGAAGCACTCGAGGTCATCCCCTACA
CCCTCGCCGAGAACGCAGGCATGCACCCCATCCACATCGTCACAGAGCTC
CGCAGACGACACGCACTCGGAGAAAAGGACGCAGGCATCAACGTCAGGGC
ATCCTGCATCGGCTCCATGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89284:137..808+

>mRNA_M-pyrifera_M_contig89284.20695.1 ID=mRNA_M-pyrifera_M_contig89284.20695.1|Name=mRNA_M-pyrifera_M_contig89284.20695.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig89284:137..808+ (Macrocystis pyrifera P11B4 male)
ATGTGCAAGAAGATCAAGGCGAGCGGGTGCAACGTTTTGTTGGTGCAAAA
GTCAATTTTGCGTGACGCGATCAACGACATGGCGCTGCACTTTTTGGCAA
AGTTCAAGATCATGGTGCTGACTCGGATCGAGCGGGACGAGATCGACTTC
ATCGCGCGCACCACTGGGGCACGGCCGGTGGCGCACGTGGACTCCTTCAC
CCCAGACAAGCTCGGGGATGCAGAGTTGGCGACGGAGGAGGATTTGGGCA
ATGGACGGCGTGTGGTGAAGATCACGGGCTGCGCCACTGCGCACAAGACC
GTGTCTCTCCTTGTGCGAGGCAGCAACAACCTGGTGCTCGAAGAGTCTGA
CCGATCCATCCACGACGCACTCTGTGTGGTGCGAGCCCTGGTGAAGAAGA
AGTTCCTCATCCCAGGAGGAGGAGCGCCTGAGATTGAATGTGCTCTGGGA
TTGTCCGCATGGAGCAAAACCGTCAGTGGCGTTGACGCTCACTGTGCAAA
GGCCTTTGCTGAAGCACTCGAGGTCATCCCCTACACCCTCGCCGAGAACG
CAGGCATGCACCCCATCCACATCGTCACAGAGCTCCGCAGACGACACGCA
CTCGGAGAAAAGGACGCAGGCATCAACGTCAGGGCATCCTGCATCGGCTC
CATGAAGATGTGCAAGAAGATCAAGGCGAGCGGGTGCAACGTTTTGTTGG
TGCAAAAGTCAATTTTGCGTGACGCGATCAACGACATGGCGCTGCACTTT
TTGGCAAAGTTCAAGATCATGGTGCTGACTCGGATCGAGCGGGACGAGAT
CGACTTCATCGCGCGCACCACTGGGGCACGGCCGGTGGCGCACGTGGACT
CCTTCACCCCAGACAAGCTCGGGGATGCAGAGTTGGCGACGGAGGAGGAT
TTGGGCAATGGACGGCGTGTGGTGAAGATCACGGGCTGCGCCACTGCGCA
CAAGACCGTGTCTCTCCTTGTGCGAGGCAGCAACAACCTGGTGCTCGAAG
AGTCTGACCGATCCATCCACGACGCACTCTGTGTGGTGCGAGCCCTGGTG
AAGAAGAAGTTCCTCATCCCAGGAGGAGGAGCGCCTGAGATTGAATGTGC
TCTGGGATTGTCCGCATGGAGCAAAACCGTCAGTGGCGTTGACGCTCACT
GTGCAAAGGCCTTTGCTGAAGCACTCGAGGTCATCCCCTACACCCTCGCC
GAGAACGCAGGCATGCACCCCATCCACATCGTCACAGAGCTCCGCAGACG
ACACGCACTCGGAGAAAAGGACGCAGGCATCAACGTCAGGGCATCCTGCA
TCGGCTCCATGAAG
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