mRNA_M-pyrifera_M_contig89273.20692.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89273.20692.1
Unique NamemRNA_M-pyrifera_M_contig89273.20692.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89273.20692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89273contigM-pyrifera_M_contig89273:103..780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size654
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.806562-CDS-M-pyrifera_M_contig89273:102..7561622816802.806562-CDS-M-pyrifera_M_contig89273:102..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89273 103..756 -
1692278187.6386895-CDS-M-pyrifera_M_contig89273:102..7561692278187.6386895-CDS-M-pyrifera_M_contig89273:102..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89273 103..756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.820607-UTR-M-pyrifera_M_contig89273:756..7801622816802.820607-UTR-M-pyrifera_M_contig89273:756..780Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89273 757..780 -
1692278187.6565506-UTR-M-pyrifera_M_contig89273:756..7801692278187.6565506-UTR-M-pyrifera_M_contig89273:756..780Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89273 757..780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89273.20692.1prot_M-pyrifera_M_contig89273.20692.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89273 103..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89273.20692.1

>prot_M-pyrifera_M_contig89273.20692.1 ID=prot_M-pyrifera_M_contig89273.20692.1|Name=mRNA_M-pyrifera_M_contig89273.20692.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
MPVHALSLDPRVNPLYWVGIGSGIGGVVEAWILGDPILSTLSVGLGLLGA
WGSIKVALREICVRSLAEQLKHFTPAPEVIVASSFGGFIALALAHTIWRG
PMVLLAPAQGSMMRRILFPWENEEGLYKTLVQSAMQRSHTSFPILPPLHS
SPPPENMRVVIIHSPTDASVPFQDSVHLSSSLPCPVHFVEAEDDHRLNNV
ATKEAMEEWVREVRGGG*
back to top

mRNA from alignment at M-pyrifera_M_contig89273:103..780-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89273.20692.1 ID=mRNA_M-pyrifera_M_contig89273.20692.1|Name=mRNA_M-pyrifera_M_contig89273.20692.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig89273:103..780- (Macrocystis pyrifera P11B4 male)
GGTGTCGAGCTGACTTCTGTGCAGATGCCTGTGCATGCACTTTCGTTGGA
CCCAAGGGTGAATCCATTATACTGGGTGGGGATTGGGTCGGGCATTGGAG
GGGTGGTAGAGGCGTGGATTTTGGGTGACCCGATTTTGTCGACATTGAGT
GTGGGATTGGGGCTGTTGGGGGCGTGGGGGAGTATAAAGGTTGCGTTGCG
AGAGATTTGTGTGCGTAGCTTGGCAGAACAGTTGAAGCACTTTACGCCAG
CCCCTGAAGTCATCGTGGCATCATCGTTTGGAGGGTTTATTGCCTTGGCG
TTGGCTCATACGATTTGGAGAGGCCCAATGGTGCTCTTGGCACCTGCACA
AGGGAGTATGATGCGCAGGATCTTGTTTCCCTGGGAAAACGAGGAAGGGT
TGTACAAAACCCTTGTCCAGTCTGCCATGCAACGATCCCACACCTCCTTC
CCCATCCTCCCACCTCTCCACTCCTCTCCACCCCCAGAAAACATGCGGGT
GGTCATCATACACAGCCCCACCGACGCCAGCGTCCCGTTCCAAGACTCGG
TCCACCTCTCCTCCTCCCTCCCCTGCCCAGTGCACTTCGTGGAGGCAGAA
GATGACCACAGACTCAACAACGTGGCCACCAAGGAAGCGATGGAGGAGTG
GGTGCGGGAGGTGAGGGGTGGGGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89273:103..780-

>mRNA_M-pyrifera_M_contig89273.20692.1 ID=mRNA_M-pyrifera_M_contig89273.20692.1|Name=mRNA_M-pyrifera_M_contig89273.20692.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig89273:103..780- (Macrocystis pyrifera P11B4 male)
ATGCCTGTGCATGCACTTTCGTTGGACCCAAGGGTGAATCCATTATACTG
GGTGGGGATTGGGTCGGGCATTGGAGGGGTGGTAGAGGCGTGGATTTTGG
GTGACCCGATTTTGTCGACATTGAGTGTGGGATTGGGGCTGTTGGGGGCG
TGGGGGAGTATAAAGGTTGCGTTGCGAGAGATTTGTGTGCGTAGCTTGGC
AGAACAGTTGAAGCACTTTACGCCAGCCCCTGAAGTCATCGTGGCATCAT
CGTTTGGAGGGTTTATTGCCTTGGCGTTGGCTCATACGATTTGGAGAGGC
CCAATGGTGCTCTTGGCACCTGCACAAGGGAGTATGATGCGCAGGATCTT
GTTTCCCTGGGAAAACGAGGAAGGGTTGTACAAAACCCTTGTCCAGTCTG
CCATGCAACGATCCCACACCTCCTTCCCCATCCTCCCACCTCTCCACTCC
TCTCCACCCCCAGAAAACATGCGGGTGGTCATCATACACAGCCCCACCGA
CGCCAGCGTCCCGTTCCAAGACTCGGTCCACCTCTCCTCCTCCCTCCCCT
GCCCAGTGCACTTCGTGGAGGCAGAAGATGACCACAGACTCAACAACGTG
GCCACCAAGGAAGCGATGGAGGAGTGGGTGCGGGAGGTGAGGGGTGGGGG
GTGAATGCCTGTGCATGCACTTTCGTTGGACCCAAGGGTGAATCCATTAT
ACTGGGTGGGGATTGGGTCGGGCATTGGAGGGGTGGTAGAGGCGTGGATT
TTGGGTGACCCGATTTTGTCGACATTGAGTGTGGGATTGGGGCTGTTGGG
GGCGTGGGGGAGTATAAAGGTTGCGTTGCGAGAGATTTGTGTGCGTAGCT
TGGCAGAACAGTTGAAGCACTTTACGCCAGCCCCTGAAGTCATCGTGGCA
TCATCGTTTGGAGGGTTTATTGCCTTGGCGTTGGCTCATACGATTTGGAG
AGGCCCAATGGTGCTCTTGGCACCTGCACAAGGGAGTATGATGCGCAGGA
TCTTGTTTCCCTGGGAAAACGAGGAAGGGTTGTACAAAACCCTTGTCCAG
TCTGCCATGCAACGATCCCACACCTCCTTCCCCATCCTCCCACCTCTCCA
CTCCTCTCCACCCCCAGAAAACATGCGGGTGGTCATCATACACAGCCCCA
CCGACGCCAGCGTCCCGTTCCAAGACTCGGTCCACCTCTCCTCCTCCCTC
CCCTGCCCAGTGCACTTCGTGGAGGCAGAAGATGACCACAGACTCAACAA
CGTGGCCACCAAGGAAGCGATGGAGGAGTGGGTGCGGGAGGTGAGGGGTG
GGGGGTGA
back to top