mRNA_M-pyrifera_M_contig89271.20690.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89271.20690.1
Unique NamemRNA_M-pyrifera_M_contig89271.20690.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A7S2LQY6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LQY6_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 5.760e-17
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    4 DLGDATGNSFWLKPPEAKETKLPPPPKFPAS----PRSGKPLRLKDLIPVRLERSGSK-------KAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPIT-AKFVTRDDVLPIVSGGTGFAAHNQV 378
            D   A   SFW   P+  +T  P   K   +    P SGK L++KDLIPV+LE +  K       +  F C +SK  +++QQ  LLKPS +VV + V    V    RCPIT  K   ++DVL +  GGTGFAAHN+V
Sbjct:  136 DKAKAREKSFWA--PQCTQTAAPADLKKADTAARCPMSGKKLKIKDLIPVKLEVTDQKLMDQGGGRGMFCCAVSKHEISHQQAALLKPSGVVVLESVLQDCVYKDMRCPITNVKLKGKEDVLLLKQGGTGFAAHNEV 270          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A7S3Y8P7_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y8P7_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-16
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   13 DATGNSFWLKP--PEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRL---ERSGSKKAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVTRDDVLPIVSGGTGFAAHNQVSVAKK 393
            D    SFWL    P AK+ K+  PPK P SP S +PLRLKDL+P++L   E +  ++A F C +S   +T Q  V L+ + +V+ K+  D +  P+  CP+T K   +   + I + GTGFA+   V +AK+
Sbjct:  173 DLQRTSFWLPEFTPAAKKQKVEAPPKRPPSPFSRRPLRLKDLVPIKLKVLEGTSGREAKFVCQVSGKQITYQDTVFLRNTGVVMLKKCYDELAKPTMTCPVTGKKFKKKHAILIKNDGTGFASTGNV-IAKQ 303          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A812KCS3_9DINO (Nosip protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812KCS3_9DINO)

HSP 1 Score: 80.1 bits (196), Expect = 3.040e-15
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 DLGDATGNSFWLKP--PEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRLERSGSK-------KAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVT-RDDVLPIVSGGTGFAAHNQV 378
            D       SFW K   P A  T++         P +GK L++KDLIPV++E +  K       K  + C +SK P+ +QQ  LLKPS +V+ + V   IV    +CP+T K +   +D+L +  GG+GF+AHN V
Sbjct:  153 DKSQLRAKSFWTKEFTPTAAPTEVKKVDATTRCPMTGKKLKVKDLIPVKMEVADQKLMDQGGGKGVYCCAVSKNPIIHQQAFLLKPSGVVILESVWKDIVSKEMKCPVTGKKLRGEEDLLKLERGGSGFSAHNDV 287          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A7S2IF21_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IF21_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-14
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   70 PPPPKFPASPRSGKPLRLKDLIPVRLERSGSKKAPFQ------CPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVTRDDVLPIVSGGTGFAAHNQVSVAKK 393
            PPPPK P SP SG PLRLKDLIP++L R  + K          C +S+  +T Q ++ +K +  V+ ++  D +  P+  CP+T K     DV+ +    +GFA+  + +VAKK
Sbjct:   20 PPPPKRPPSPMSGNPLRLKDLIPIQLNREPTSKKRSSSEGRCICAVSEKAITTQPVIAIKNTGQVMLQECYDQLAKPTMICPVTGKKFKEKDVITLQKAASGFASSGE-TVAKK 132          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A813CI27_9DINO (Nosip protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CI27_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 4.270e-14
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 DLGDATGNSFWLKP--PEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRLERSGSK-------KAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVT-RDDVLPIVSGGTGFAAHNQV 378
            D       SFW K   P A  T++         P +GK L++KDLIPV+++ +  K       K  + C +SK  + +QQ +LLKP+ +V+ + V   IV    +CP+T K +   +D+L +  GG+GF+AHN V
Sbjct:   51 DKSQLRAKSFWTKEFTPTAAPTEVKKVDATTRCPMTGKKLKVKDLIPVKMDIADQKLMDQGGGKGVYCCAVSKNAIIHQQALLLKPTGVVILESVWKDIVSKEMKCPVTGKKLRGEEDLLKLERGGSGFSAHNDV 185          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A6G0X581_9STRA (zf-NOSIP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X581_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.690e-14
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 SFWLKP--PEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRLERSGSK---KAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVTRDDVLPIVSGGTGFAAHNQVSVAK 390
            SFW+    P A+ T L  P  F   P SGKPL+LK L+PV L+RS ++   +    C +S   +T+Q  VLL+PS  ++ + +   +VLP+  CPI+   + + D++ + +GG+ F+AH+ V   K
Sbjct:  154 SFWVPDFTPTAEVT-LAKPDDFTKDPMSGKPLKLKQLMPVHLKRSDAETKGETVVMCAVSNKAITHQLPVLLRPSGQIIMESLLKDMVLPTMTCPISGLKLRQKDIVHLQAGGSSFSAHSTVEAKK 278          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A7S3CXN5_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CXN5_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 1.980e-13
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    4 DLGDATGNSFWL--KPPEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRL----------ERSGSKKAPFQCPISKTPLTNQ-QLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVTRDDVLPIVSGGTGFAAHNQVSVAKK 393
            +   A  NSFW+  K P++ E  +  P      P + KPL++K+L P++L          E+   K+  F CP  +  LTN  + V +K +  V  K   D I+ P   C  ++K VT DD +P+ SGGTGFA+H+     K+
Sbjct:  161 ETASAASNSFWMPSKTPDSGEHLIKKPDGATRCPATNKPLKMKELFPLKLTTVQEVGGDTEKLDGKEFKFACPSCRKTLTNTIKAVAIKSTGHVYCKHCIDLIIKPDMICLASSKKVTEDDFVPLASGGTGFASHDDKLEVKR 303          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A7S2UPF1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPF1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-13
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   76 PPKFPASPRSGKPLRLKDLIPVRLERSGSKKAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVTRDDVLPIVSGGTGFAAHNQVSVAK 390
            PPK PASP SG+PLR+KDL P+ L    +    F C +S   LT Q +V +  S  V+ K V D +  P+  CPIT K      VL +  G +GFAA   V+  K
Sbjct:  173 PPKRPASPMSGEPLRIKDLTPLDLRTDDA--GGFTCAVSDKSLTTQPVVAITKSGQVMLKSVFDELARPTMTCPITGKKFKEKHVLTLQKGSSGFAASGSVTAKK 275          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A813AXY0_SYMMI (Nosip protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813AXY0_SYMMI)

HSP 1 Score: 75.5 bits (184), Expect = 2.870e-13
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 DLGDATGNSFWLKP--PEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRLERSGSK-------KAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVT-RDDVLPIVSGGTGFAAHNQV 378
            D       SFW K   P A  T++         P +GK L++KDLIPV+++ +  K       K  + C +SK  + +QQ +LLKP+ +V+ + V   IV    +CP+T K +   +D+L +  GG+GF+AHN V
Sbjct:  512 DKSQLRAKSFWTKEFTPTAAPTEVKKVDATTRCPMTGKKLKVKDLIPVKMDIADQKLMDQGGGKGVYCCAVSKNAIIHQQALLLKPTGVVILESVWKDIVSKEMKCPVTGKKLRGEEDLLKLERGGSGFSAHNDV 646          
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Match: A0A1Q9CYN2_SYMMI (Nitric oxide synthase-interacting protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CYN2_SYMMI)

HSP 1 Score: 75.5 bits (184), Expect = 3.150e-13
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 DLGDATGNSFWLKP--PEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRLERSGSK-------KAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPITAKFVT-RDDVLPIVSGGTGFAAHNQV 378
            D       SFW K   P A  T++         P +GK L++KDLIPV+++ +  K       K  + C +SK  + +QQ +LLKP+ +V+ + V   IV    +CP+T K +   +D+L +  GG+GF+AHN V
Sbjct: 2819 DKSQLRAKSFWTKEFTPTAAPTEVKKVDATTRCPMTGKKLKVKDLIPVKMDIADQKLMDQGGGKGVYCCAVSKNAIIHQQALLLKPTGVVILESVWKDIVSKEMKCPVTGKKLRGEEDLLKLERGGSGFSAHNDV 2953          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89271.20690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2LQY6_9DINO5.760e-1741.61Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S3Y8P7_9EUKA1.460e-1638.64Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A812KCS3_9DINO3.040e-1537.04Nosip protein n=5 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A7S2IF21_9STRA1.700e-1437.72Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A813CI27_9DINO4.270e-1434.81Nosip protein (Fragment) n=1 Tax=Symbiodinium necr... [more]
A0A6G0X581_9STRA5.690e-1436.51zf-NOSIP domain-containing protein n=1 Tax=Aphanom... [more]
A0A7S3CXN5_9EUKA1.980e-1333.57Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S2UPF1_9STRA2.850e-1341.90Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A813AXY0_SYMMI2.870e-1334.81Nosip protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A1Q9CYN2_SYMMI3.150e-1334.81Nitric oxide synthase-interacting protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89271contigM-pyrifera_M_contig89271:280..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog227086.JGI_V11_52988
Preferred nameNOSIP
KEGG koko:K12857,ko:K13125
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016567,GO:0016604,GO:0016607,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0031090,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032768,GO:0032769,GO:0034641,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0050999,GO:0051001,GO:0051341,GO:0051354,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0090304,GO:0097159,GO:0098588,GO:0098791,GO:0140096,GO:1901360,GO:1901363,GO:1901564
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsKOG3039@1,KOG3039@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.7268019-CDS-M-pyrifera_M_contig89271:279..6811622816802.7268019-CDS-M-pyrifera_M_contig89271:279..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89271 280..681 -
1692278187.5977213-CDS-M-pyrifera_M_contig89271:279..6811692278187.5977213-CDS-M-pyrifera_M_contig89271:279..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89271 280..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89271.20690.1prot_M-pyrifera_M_contig89271.20690.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89271 280..681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89271.20690.1

>prot_M-pyrifera_M_contig89271.20690.1 ID=prot_M-pyrifera_M_contig89271.20690.1|Name=mRNA_M-pyrifera_M_contig89271.20690.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
EDLGDATGNSFWLKPPEAKETKLPPPPKFPASPRSGKPLRLKDLIPVRLE
RSGSKKAPFQCPISKTPLTNQQLVLLKPSRIVVTKQVADTIVLPSGRCPI
TAKFVTRDDVLPIVSGGTGFAAHNQVSVAKKMH*
back to top

mRNA from alignment at M-pyrifera_M_contig89271:280..681-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89271.20690.1 ID=mRNA_M-pyrifera_M_contig89271.20690.1|Name=mRNA_M-pyrifera_M_contig89271.20690.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig89271:280..681- (Macrocystis pyrifera P11B4 male)
GAAGATCTAGGGGACGCGACAGGGAATTCGTTTTGGTTAAAGCCACCAGA AGCAAAAGAAACAAAACTACCACCACCTCCAAAGTTTCCTGCCTCCCCAC GATCTGGGAAACCCTTGCGCCTCAAAGATCTCATTCCAGTCAGACTTGAG CGTTCTGGGAGTAAGAAGGCACCATTTCAGTGTCCAATCTCGAAGACACC ACTCACGAACCAGCAACTTGTGCTCTTGAAACCCTCTCGTATTGTTGTGA CCAAACAAGTTGCGGACACAATTGTGCTTCCATCTGGAAGGTGTCCTATC ACTGCAAAGTTTGTGACCCGTGATGATGTCCTTCCTATCGTTTCTGGTGG GACAGGTTTTGCTGCGCACAATCAAGTATCTGTAGCAAAGAAAATGCATT AA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89271:280..681-

>mRNA_M-pyrifera_M_contig89271.20690.1 ID=mRNA_M-pyrifera_M_contig89271.20690.1|Name=mRNA_M-pyrifera_M_contig89271.20690.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig89271:280..681- (Macrocystis pyrifera P11B4 male)
GAAGATCTAGGGGACGCGACAGGGAATTCGTTTTGGTTAAAGCCACCAGA
AGCAAAAGAAACAAAACTACCACCACCTCCAAAGTTTCCTGCCTCCCCAC
GATCTGGGAAACCCTTGCGCCTCAAAGATCTCATTCCAGTCAGACTTGAG
CGTTCTGGGAGTAAGAAGGCACCATTTCAGTGTCCAATCTCGAAGACACC
ACTCACGAACCAGCAACTTGTGCTCTTGAAACCCTCTCGTATTGTTGTGA
CCAAACAAGTTGCGGACACAATTGTGCTTCCATCTGGAAGGTGTCCTATC
ACTGCAAAGTTTGTGACCCGTGATGATGTCCTTCCTATCGTTTCTGGTGG
GACAGGTTTTGCTGCGCACAATCAAGTATCTGTAGCAAAGAAAATGCATT
AAGAAGATCTAGGGGACGCGACAGGGAATTCGTTTTGGTTAAAGCCACCA
GAAGCAAAAGAAACAAAACTACCACCACCTCCAAAGTTTCCTGCCTCCCC
ACGATCTGGGAAACCCTTGCGCCTCAAAGATCTCATTCCAGTCAGACTTG
AGCGTTCTGGGAGTAAGAAGGCACCATTTCAGTGTCCAATCTCGAAGACA
CCACTCACGAACCAGCAACTTGTGCTCTTGAAACCCTCTCGTATTGTTGT
GACCAAACAAGTTGCGGACACAATTGTGCTTCCATCTGGAAGGTGTCCTA
TCACTGCAAAGTTTGTGACCCGTGATGATGTCCTTCCTATCGTTTCTGGT
GGGACAGGTTTTGCTGCGCACAATCAAGTATCTGTAGCAAAGAAAATGCA
TTAA
back to top