mRNA_M-pyrifera_M_contig89269.20688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89269.20688.1
Unique NamemRNA_M-pyrifera_M_contig89269.20688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A2E8L7T1_9ACTN (Ribonuclease H n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L7T1_9ACTN)

HSP 1 Score: 353 bits (906), Expect = 5.680e-119
Identity = 166/269 (61.71%), Postives = 209/269 (77.70%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            DALR++ G V VVSDSTYVVNCFRDGWW GW+ RGWKNSKKE VANRD+WEPLI+LYRSRE E+TFRWVKGH G+E+ND+ADRLAVEASHT RGR G G PDDLGP D++        A+P    +G + S+W PTG A++++G+QP  LGGYD N     VRRQ+ EI+  K  + P LVV+TGLRLGAETL AEAA  A +P+VAVLP+PDP+ KWPA ++RRF E++  A+++VLLE+K P   + AG+++DRRNGW R++A EA+
Sbjct:   58 DALRTIEGSVEVVSDSTYVVNCFRDGWWNGWLKRGWKNSKKEAVANRDIWEPLIDLYRSREAEITFRWVKGHAGDEYNDIADRLAVEASHTGRGRHGVGTPDDLGPPDEINAGGSVPAAAPKPGPDGVYSSSWAPTGPAILIMGVQPPQLGGYDPNPIADEVRRQITEILVAKAELHPDLVVVTGLRLGAETLAAEAAAEAELPFVAVLPFPDPEIKWPAATQRRFHELIAEASAIVLLEKKVPADNRAAGRALDRRNGWLRKIATEAI 326          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A7K1ZAM2_9ACTN (Ribonuclease H n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZAM2_9ACTN)

HSP 1 Score: 311 bits (796), Expect = 3.990e-102
Identity = 160/278 (57.55%), Postives = 190/278 (68.35%), Query Frame = 1
Query:    1 DALRSLPGEVG----VVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQ-----PTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +ALR+L G +G    VVSDSTYVVNCFRD WW GW+ R W+NS K+PVANRD+WEPLIELYR    E+TF WVKGH GNEWNDVADRLA EAS TQ GR G G+PDDLG AD+     EP  A      +     +WRP G  + +LGLQ     P   G +D    T   R++L EI+  K  +D  LVVLTGLR GAETLGAEAA  +GVPYV VLPYP+P  KWPA  R  FA +LE AA VV L+RK P +P+ AG+++ RRN W R+VADEA+
Sbjct:   67 EALRALAGPLGGPVEVVSDSTYVVNCFRDRWWAGWLKRDWRNSNKQPVANRDIWEPLIELYREAPHEITFTWVKGHAGNEWNDVADRLAAEASRTQVGRDGVGMPDDLGEADES----EPPGAGERTTGDRADAGSWRPAGRCVAILGLQIGSTGPESTGPHDSRSVTT--RQRLAEILAAKKELDNDLVVLTGLRRGAETLGAEAAVESGVPYVVVLPYPNPAVKWPAADRNHFALMLEGAAKVVCLQRKVPTTPKNAGEALKRRNAWLRKVADEAL 338          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: UPI001AA02048 (ribonuclease HI n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA02048)

HSP 1 Score: 295 bits (754), Expect = 3.840e-96
Identity = 154/269 (57.25%), Postives = 192/269 (71.38%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +A+R+ PG + VVSDSTYVVNCFRD WW+GW+ RGWKNS+++PVANRDLWEPL+EL R+R D +TFRWVKGH G+  N++ DRLAVEA+  QRGRSG G P +LGPAD  +G  +P      ADA           G  LVV G +P  LGGY +N   A VRR+LVEI+  KH +   LVV+TGLRLGAE LGA+AAR AGVPY+ VLPYP P+  WP  S+ +F ++L+ A  V+ LERKEPRS QQAG ++ RR+ W  + A EAV
Sbjct:   49 EAVRANPGRLEVVSDSTYVVNCFRDRWWEGWLERGWKNSQRKPVANRDLWEPLVELVRARGD-VTFRWVKGHGGDPMNELVDRLAVEAALEQRGRSGIGPPPELGPADQ-VGRPQPAAL---ADAP--------LPGHPLVVFGHRPPELGGYGDNPVAAEVRRKLVEILRAKHELFADLVVVTGLRLGAEMLGAQAAREAGVPYLVVLPYPHPEKVWPDESQHQFRDLLDDAIDVITLERKEPRSKQQAGAALARRDAWLARHAAEAV 304          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A6J4J3F3_9ACTN (Ribonuclease H n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4J3F3_9ACTN)

HSP 1 Score: 281 bits (718), Expect = 1.260e-90
Identity = 143/269 (53.16%), Postives = 182/269 (67.66%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +A+RSL G + VVSDSTYVVNCFRD WW+GW+ARGW N  K+PVANRDLWEPLI+  RS    +TFRWVKGH  +  ND+ DRLAVEA+ TQ GRSG   PD LGPAD            P AD + R      P G  L V+G +P  LGGYD N  +  VR ++ +++  K +V+P LVVLTGL LG+E L AEAA  AGVPYVAVLPYPDPD++WP+ SR+ F  +++ A + V+L+ K P + Q AG ++ RR+ W  + A EA+
Sbjct:   58 EAVRSLEGPLVVVSDSTYVVNCFRDRWWEGWLARGWMNKAKKPVANRDLWEPLIDAIRSDPSRVTFRWVKGHSDDPANDLVDRLAVEAARTQEGRSGDDPPDSLGPAD---------TPGPGADLDPRL-----PPGHLLAVIGHKPPELGGYDANPVSDAVRAKVAQVLAAKRQVNPDLVVLTGLGLGSEQLAAEAAAEAGVPYVAVLPYPDPDSQWPSSSRKAFQALVDGARATVVLQGKPPATKQLAGAALRRRDAWLGRHAHEAI 312          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A6G0A4B6_9ACTN (Ribonuclease H n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A4B6_9ACTN)

HSP 1 Score: 279 bits (713), Expect = 6.160e-90
Identity = 143/269 (53.16%), Postives = 184/269 (68.40%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +A+RSL G + VVSDSTYVV CF DGWW+GW+ RGW+ ++++ VANRDLWEP IEL   R D ++FRWVKGH  +  ND+ADRLAVEA   +RGRSG  LP D+GP D  +           +DA  R   +  P+G  L V G +P  LGGY+ N+   GVR +LV+I+  K ++   LVVLTGLRLGAE LGAEAA  AGVP+VAVLPYPDP + WP  S+ RF E++ +AA VV LERK P S ++ G+++ RR+GW     DEA+
Sbjct:   50 EAVRSLDGPLEVVSDSTYVVRCFNDGWWRGWVERGWRTAQRKEVANRDLWEPFIELVNERGD-ISFRWVKGHSEDPLNDLADRLAVEAIANRRGRSGEVLPTDVGPPDGAVAN---------SDARSRRADSRVPSGHLLGVFGHRPLELGGYEPNDLQDGVRSRLVDILSAKQQMHEDLVVLTGLRLGAEQLGAEAAAEAGVPFVAVLPYPDPQSAWPERSQARFRELVGAAAGVVQLERKVPGSNKEVGEALARRDGWLAANLDEAI 308          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A349BAY4_9ACTN (Ribonuclease H n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BAY4_9ACTN)

HSP 1 Score: 277 bits (708), Expect = 4.370e-89
Identity = 146/268 (54.48%), Postives = 181/268 (67.54%), Query Frame = 1
Query:    4 ALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            A+++    + VVSDSTYVVNCFRDGWW+GW+A+ WKNS+K+PVANRDLWEP IEL R R D + F WVKGH G+E ND+ADRLAV A+ TQ  + G  +PDDLG AD +        AS   D + R      PTG  L V G +P  LGGYD N  +  V R+L EI+  K R+ P L V++GLRLGAE LGAEAA   G+P VAVLP+PD DA WP  SRRRFA++  +AA+ VLLERK P S  +   S+ RR+GW  +  DEA+
Sbjct:   52 AVQAHDEPLTVVSDSTYVVNCFRDGWWRGWLAKDWKNSQKKPVANRDLWEPFIELVRERGD-VDFEWVKGHGGDEMNDIADRLAVAAAETQTEQEGDQVPDDLGDADAVGPAPAGAPASAAPDRDRRL-----PTGRLLGVFGARPPELGGYDANPVSDAVGRRLQEILAAKARMHPDLHVVSGLRLGAEMLGAEAAVAEGIPVVAVLPFPDADAPWPEKSRRRFADLRSAAATEVLLERKVPESKAKVAGSLRRRDGWLAKNLDEAI 313          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A2W6DIT5_9ACTN (Ribonuclease H n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A2W6DIT5_9ACTN)

HSP 1 Score: 274 bits (700), Expect = 5.350e-88
Identity = 142/269 (52.79%), Postives = 178/269 (66.17%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +A+ +LPG + VVSDSTYVVNCFRD WW+GW+ARGW+N  K+PVANRDLWEPL+E  R+    ++FRWVKGH  +  ND+ DRLAVEA+  QRGR+G G P DLG AD        T     + A G  G T  P G  +VV G +P  LGGYD+N      R +L EI+  K  + P LVVLTGL LGAE LGAEAA  A VPYVAVL YPDPD  WPAPS+  F E+L  A++ ++LE + P +   AG ++ RR+ W  + A EA+
Sbjct:   45 EAVTALPGPLQVVSDSTYVVNCFRDRWWEGWMARGWRNKAKQPVANRDLWEPLVEAVRADPGRVSFRWVKGHGTDAVNDLVDRLAVEAARNQRGRTGLGTPADLGSAD--------TVGRRGSAAVGAAG-TAAPEGHLIVVTGHRPPALGGYDDNPVADRTRHELAEILAAKRVLHPDLVVLTGLGLGAEQLGAEAAAAADVPYVAVLAYPDPDTMWPAPSKAHFRELLAGASATIVLESRAPATRPLAGAALRRRDAWLARNAAEAL 304          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: UPI0018983993 (hypothetical protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=UPI0018983993)

HSP 1 Score: 268 bits (685), Expect = 2.490e-85
Identity = 144/271 (53.14%), Postives = 182/271 (67.16%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADA--EGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +A+R+  G V VVSDSTYVVNCFRD WW+GWI RGW NSKKEPVANRDLWEP +EL R R D +TFRWVKGH G+  ND+ADRLAV A+ +Q G SG+  PD      D  G +     +P+A A  +GR  +      G + V G +P  LGGY  N    GVR +L  ++  +  +DP LVV++GLRLGAE LGAEAA   G+P VAVLP+PDPDA+W A +R RFA++L+ A  VV LERK PR+ Q+ G S+ RR+GW  +    A+
Sbjct:   71 EAVRAATGPVEVVSDSTYVVNCFRDRWWEGWIRRGWTNSKKEPVANRDLWEPFVELVRERGD-VTFRWVKGHGGDPLNDIADRLAVAAAASQLGASGSTHPDVTKLPTDPTGAV----GAPSAGARRDGRLPAAPIAESG-VAVFGHRPPELGGYGPNPIADGVRDELRRVLAARREMDPDLVVVSGLRLGAEQLGAEAAVSLGLPLVAVLPHPDPDARWSADARTRFADLLDRAEEVVTLERKVPRNSQEVGSSLARRDGWLARNVAAAI 335          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A7W1E0S9_9ACTN (Ribonuclease H n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E0S9_9ACTN)

HSP 1 Score: 264 bits (674), Expect = 2.680e-84
Identity = 137/269 (50.93%), Postives = 177/269 (65.80%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +ALR++ G V VVSDSTYVVNCFRD WW+GWIARGWKNS K+ VAN+DLW+PLIELYRSR  E+ FRWVKGH  +  ND+ D+LAV A+  Q+  +G G+P+        +  L+P                  P G  + V+G +P  LGGYD N   A V R+L E+++ K ++   LVV+TGL LGAE LGA AA  AGVP+VAVLPYPD D+ WPA SR  +  +L +AA  V+L+ K P + QQAG ++ RR+GW    ADEA+
Sbjct:   45 EALRAIDGAVEVVSDSTYVVNCFRDRWWEGWIARGWKNSAKKDVANQDLWKPLIELYRSRASEIEFRWVKGHSEDVMNDLVDQLAVRAAQLQQADTGEGVPEVS------VEDLDPRV----------------PPGHRVAVIGHRPPALGGYDANPIVAEVERRLTEVLDAKRQLHDDLVVMTGLGLGAEQLGARAALAAGVPFVAVLPYPDQDSVWPALSRAGYKSLLAAAARTVVLQPKAPSNRQQAGGALARRDGWLAGNADEAI 291          
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A7V9V8N2_9ACTN (Ribonuclease H n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9V8N2_9ACTN)

HSP 1 Score: 263 bits (673), Expect = 1.020e-83
Identity = 141/269 (52.42%), Postives = 172/269 (63.94%), Query Frame = 1
Query:    1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807
            +A+ SL G + VVSDSTYVVNCFRD WW+GW+ARGW N  K+PVANRDLWEPLI+  RS    + F WVKGH  +  ND+ DRLAVEA+ +QRGRSG G+P+ LG A DL+         P +D          P G  LVV G +P  LGGY+EN  + GVR QL  I+  K  V+P LVVLTGL LG E LGAEAA    V YVAVL +P  +  WPA +R R+  +LE A   VLL+ K P S Q AG ++ RR+ W  + A EAV
Sbjct:   67 EAVTSLEGPLEVVSDSTYVVNCFRDRWWEGWLARGWLNKAKKPVANRDLWEPLIDAVRSDPQRVGFTWVKGHSADRMNDLVDRLAVEAARSQRGRSGEGMPEGLG-APDLV------PVGPDSDPR-------VPEGHRLVVAGHRPPALGGYEENTVSEGVREQLRRILAAKRVVNPDLVVLTGLGLGTEQLGAEAAVAVDVGYVAVLAFPSQEQVWPASTRERYRRLLEGATGQVLLQAKAPESKQSAGMALRRRDAWLARHAHEAV 321          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8L7T1_9ACTN5.680e-11961.71Ribonuclease H n=9 Tax=Acidimicrobiaceae bacterium... [more]
A0A7K1ZAM2_9ACTN3.990e-10257.55Ribonuclease H n=2 Tax=Acidimicrobiaceae bacterium... [more]
UPI001AA020483.840e-9657.25ribonuclease HI n=1 Tax=Rhabdothermincola sedimini... [more]
A0A6J4J3F3_9ACTN1.260e-9053.16Ribonuclease H n=1 Tax=uncultured Acidimicrobiales... [more]
A0A6G0A4B6_9ACTN6.160e-9053.16Ribonuclease H n=2 Tax=Bacteria TaxID=2 RepID=A0A6... [more]
A0A349BAY4_9ACTN4.370e-8954.48Ribonuclease H n=1 Tax=Acidimicrobiaceae bacterium... [more]
A0A2W6DIT5_9ACTN5.350e-8852.79Ribonuclease H n=1 Tax=Acidimicrobiales bacterium ... [more]
UPI00189839932.490e-8553.14hypothetical protein n=1 Tax=Actinomarinicola trop... [more]
A0A7W1E0S9_9ACTN2.680e-8450.93Ribonuclease H n=1 Tax=Actinomycetia bacterium Tax... [more]
A0A7V9V8N2_9ACTN1.020e-8352.42Ribonuclease H n=1 Tax=Actinomycetia bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89269contigM-pyrifera_M_contig89269:1..807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score167.2
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog1229780.BN381_210098
Preferred namernhA
KEGG koko:K03469
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
EggNOG free text desc.Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
EggNOG OGs2GK53@201174,3UX0A@52018,COG0328@1,COG0328@2
EC3.1.26.4
COG Functional cat.L
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032
Exons1
Model size807
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.653335-CDS-M-pyrifera_M_contig89269:0..8071622816802.653335-CDS-M-pyrifera_M_contig89269:0..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89269 1..807 -
1692278187.5660655-CDS-M-pyrifera_M_contig89269:0..8071692278187.5660655-CDS-M-pyrifera_M_contig89269:0..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89269 1..807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89269.20688.1prot_M-pyrifera_M_contig89269.20688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89269 1..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89269.20688.1

>prot_M-pyrifera_M_contig89269.20688.1 ID=prot_M-pyrifera_M_contig89269.20688.1|Name=mRNA_M-pyrifera_M_contig89269.20688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=269bp
DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLW
EPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGL
PDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGL
GGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARL
AGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQA
GQSMDRRNGWFRQVADEAV
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mRNA from alignment at M-pyrifera_M_contig89269:1..807-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89269.20688.1 ID=mRNA_M-pyrifera_M_contig89269.20688.1|Name=mRNA_M-pyrifera_M_contig89269.20688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig89269:1..807- (Macrocystis pyrifera P11B4 male)
GACGCCCTGCGGAGCCTGCCCGGCGAGGTCGGGGTCGTGTCGGACTCGAC CTATGTCGTCAACTGCTTCCGCGATGGCTGGTGGAAGGGGTGGATCGCGC GGGGCTGGAAGAACTCCAAGAAGGAGCCCGTGGCGAACCGCGACCTCTGG GAGCCGCTGATCGAGCTCTACCGGAGCCGTGAGGACGAGCTGACGTTTCG CTGGGTCAAGGGTCACGACGGCAACGAGTGGAACGACGTCGCCGACCGGC TCGCGGTCGAGGCGTCGCACACCCAGCGCGGCCGGTCGGGCACCGGGCTG CCCGACGACCTCGGTCCGGCTGACGACCTCATCGGGACGCTGGAGCCGAC GGAAGCTTCCCCCACGGCCGATGCCGAGGGTCGCTTCGGCTCGACCTGGC GGCCGACGGGCGGCGCGCTCGTCGTGTTGGGCCTCCAGCCGACGGGTCTG GGGGGCTACGACGAGAACGAGACAACGGCCGGGGTGCGGCGACAGTTGGT CGAGATCATCGAGGGCAAGCACCGGGTCGACCCCACCCTCGTCGTGCTCA CCGGCCTGCGACTGGGAGCCGAGACGCTCGGCGCCGAGGCCGCCCGTCTC GCCGGCGTGCCCTATGTCGCGGTCCTGCCGTATCCCGACCCCGATGCGAA ATGGCCGGCCCCGTCGCGCCGCCGCTTCGCGGAAGTGCTCGAGTCGGCCG CCTCGGTGGTGCTACTCGAACGCAAGGAGCCGCGTTCGCCACAACAGGCC GGCCAGTCGATGGACCGGCGTAACGGTTGGTTCCGCCAGGTCGCCGACGA AGCGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89269:1..807-

>mRNA_M-pyrifera_M_contig89269.20688.1 ID=mRNA_M-pyrifera_M_contig89269.20688.1|Name=mRNA_M-pyrifera_M_contig89269.20688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1614bp|location=Sequence derived from alignment at M-pyrifera_M_contig89269:1..807- (Macrocystis pyrifera P11B4 male)
GACGCCCTGCGGAGCCTGCCCGGCGAGGTCGGGGTCGTGTCGGACTCGAC
CTATGTCGTCAACTGCTTCCGCGATGGCTGGTGGAAGGGGTGGATCGCGC
GGGGCTGGAAGAACTCCAAGAAGGAGCCCGTGGCGAACCGCGACCTCTGG
GAGCCGCTGATCGAGCTCTACCGGAGCCGTGAGGACGAGCTGACGTTTCG
CTGGGTCAAGGGTCACGACGGCAACGAGTGGAACGACGTCGCCGACCGGC
TCGCGGTCGAGGCGTCGCACACCCAGCGCGGCCGGTCGGGCACCGGGCTG
CCCGACGACCTCGGTCCGGCTGACGACCTCATCGGGACGCTGGAGCCGAC
GGAAGCTTCCCCCACGGCCGATGCCGAGGGTCGCTTCGGCTCGACCTGGC
GGCCGACGGGCGGCGCGCTCGTCGTGTTGGGCCTCCAGCCGACGGGTCTG
GGGGGCTACGACGAGAACGAGACAACGGCCGGGGTGCGGCGACAGTTGGT
CGAGATCATCGAGGGCAAGCACCGGGTCGACCCCACCCTCGTCGTGCTCA
CCGGCCTGCGACTGGGAGCCGAGACGCTCGGCGCCGAGGCCGCCCGTCTC
GCCGGCGTGCCCTATGTCGCGGTCCTGCCGTATCCCGACCCCGATGCGAA
ATGGCCGGCCCCGTCGCGCCGCCGCTTCGCGGAAGTGCTCGAGTCGGCCG
CCTCGGTGGTGCTACTCGAACGCAAGGAGCCGCGTTCGCCACAACAGGCC
GGCCAGTCGATGGACCGGCGTAACGGTTGGTTCCGCCAGGTCGCCGACGA
AGCGGTCGACGCCCTGCGGAGCCTGCCCGGCGAGGTCGGGGTCGTGTCGG
ACTCGACCTATGTCGTCAACTGCTTCCGCGATGGCTGGTGGAAGGGGTGG
ATCGCGCGGGGCTGGAAGAACTCCAAGAAGGAGCCCGTGGCGAACCGCGA
CCTCTGGGAGCCGCTGATCGAGCTCTACCGGAGCCGTGAGGACGAGCTGA
CGTTTCGCTGGGTCAAGGGTCACGACGGCAACGAGTGGAACGACGTCGCC
GACCGGCTCGCGGTCGAGGCGTCGCACACCCAGCGCGGCCGGTCGGGCAC
CGGGCTGCCCGACGACCTCGGTCCGGCTGACGACCTCATCGGGACGCTGG
AGCCGACGGAAGCTTCCCCCACGGCCGATGCCGAGGGTCGCTTCGGCTCG
ACCTGGCGGCCGACGGGCGGCGCGCTCGTCGTGTTGGGCCTCCAGCCGAC
GGGTCTGGGGGGCTACGACGAGAACGAGACAACGGCCGGGGTGCGGCGAC
AGTTGGTCGAGATCATCGAGGGCAAGCACCGGGTCGACCCCACCCTCGTC
GTGCTCACCGGCCTGCGACTGGGAGCCGAGACGCTCGGCGCCGAGGCCGC
CCGTCTCGCCGGCGTGCCCTATGTCGCGGTCCTGCCGTATCCCGACCCCG
ATGCGAAATGGCCGGCCCCGTCGCGCCGCCGCTTCGCGGAAGTGCTCGAG
TCGGCCGCCTCGGTGGTGCTACTCGAACGCAAGGAGCCGCGTTCGCCACA
ACAGGCCGGCCAGTCGATGGACCGGCGTAACGGTTGGTTCCGCCAGGTCG
CCGACGAAGCGGTC
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