mRNA_M-pyrifera_M_contig89248.20680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89248.20680.1
Unique NamemRNA_M-pyrifera_M_contig89248.20680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: A0A0G4F765_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F765_VITBC)

HSP 1 Score: 60.5 bits (145), Expect = 3.160e-10
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 MFDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRS 159
            MFD+ R++G  L  +G A  GLG+LLFFDRALLALGNL F+    FL+GF ++
Sbjct:    1 MFDDNRKIGIGLTLLGLAMTGLGVLLFFDRALLALGNLSFLCGLCFLLGFAKT 53          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: F0WY71_9STRA (Vesicle transporter GOT1Blike protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WY71_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.830e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    4 FDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            FD+ R++G  LL IG  FL LG++LFFD ALLALG++L ++     IGFQR++
Sbjct:    3 FDDNRKIGTLLLGIGFGFLLLGVILFFDAALLALGDILLLSGVALTIGFQRTI 55          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: A0A5D6XZN9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZN9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.300e-9
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 MFDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            M D+ R++G  LL +G AFL LG+LLFFD ALLALG++LF+      IG  R+V
Sbjct:    1 MLDDNRKIGTLLLGVGFAFLLLGVLLFFDAALLALGDVLFLCGLALTIGLSRTV 54          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: A0A813BTX5_9DINO (Eas-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BTX5_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 1.690e-8
Identity = 24/51 (47.06%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   10 EKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            + R++G  L ++G  F+ LG++LFFD  L+A+G++LF+A+FPFL+G Q+S+
Sbjct:    6 DNRKIGIMLTSLGLFFMVLGVMLFFDSGLIAIGDILFLASFPFLVGVQKSL 56          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: A0A0P6DXC1_9CRUS (Vesicle transport protein GOT1B n=3 Tax=Daphnia TaxID=6668 RepID=A0A0P6DXC1_9CRUS)

HSP 1 Score: 55.8 bits (133), Expect = 2.140e-8
Identity = 25/53 (47.17%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    4 FDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            F + +++GA L  +G AF+ LG+LLFFD+ LLA+GNLLF++   F+IG ++++
Sbjct:    4 FTDTQKIGAGLAGMGVAFIFLGILLFFDKGLLAIGNLLFLSGLAFIIGMKKTI 56          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: UPI0007118D3C (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007118D3C)

HSP 1 Score: 55.8 bits (133), Expect = 2.560e-8
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 MFDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            +F + R++G  L+++G   L L  +LFFD ALLA+GN+LF+   PFL GF R +
Sbjct:    8 LFSDNRKIGVILVSLGVTLLVLXXILFFDSALLAMGNILFLGGMPFLFGFMRCL 61          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: H3G8V1_PHYRM (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3G8V1_PHYRM)

HSP 1 Score: 55.5 bits (132), Expect = 2.960e-8
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 MFDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            M D+ R++G  LL +G AFL LG+L+FFD A+LALG++LF++     IG  R+V
Sbjct:    1 MLDDNRKIGTLLLGLGFAFLLLGVLMFFDAAMLALGDVLFLSGVALTIGLSRTV 54          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: A0A2H3K439_WOLCO (Got1-domain-containing protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3K439_WOLCO)

HSP 1 Score: 55.5 bits (132), Expect = 3.020e-8
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   10 EKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRS 159
            + +++G  L + GA F+ LG+LLFFD ALLALGN+LF+A FP +IG Q++
Sbjct:    7 DGQKIGVALTSFGALFMVLGVLLFFDGALLALGNILFLAGFPLIIGTQKT 56          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: A0A6A7BZ56_9PEZI (Got1-domain-containing protein n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7BZ56_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 3.250e-8
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    7 DEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
             + +++G  L AIG AFL LG+++F DRALLA+GNLL VA    L+GF R+V
Sbjct:    6 SDTQKIGVGLCAIGTAFLSLGVIMFLDRALLAMGNLLLVAGIVTLLGFPRTV 57          
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Match: K3X7C2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7C2_GLOUD)

HSP 1 Score: 55.1 bits (131), Expect = 4.180e-8
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 MFDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGFQRSV 162
            M D+ R++G  LL IG  F+ LG+LLFFD ALLALG++LF+      IG  R++
Sbjct:    1 MLDDNRKIGTLLLGIGFVFIMLGVLLFFDAALLALGDVLFLCGLALTIGLTRTI 54          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89248.20680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4F765_VITBC3.160e-1056.60Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
F0WY71_9STRA3.830e-952.83Vesicle transporter GOT1Blike protein putative n=2... [more]
A0A5D6XZN9_9STRA5.300e-953.70Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A813BTX5_9DINO1.690e-847.06Eas-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A0P6DXC1_9CRUS2.140e-847.17Vesicle transport protein GOT1B n=3 Tax=Daphnia Ta... [more]
UPI0007118D3C2.560e-846.30hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
H3G8V1_PHYRM2.960e-850.00Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
A0A2H3K439_WOLCO3.020e-854.00Got1-domain-containing protein n=1 Tax=Wolfiporia ... [more]
A0A6A7BZ56_9PEZI3.250e-853.85Got1-domain-containing protein n=1 Tax=Piedraia ho... [more]
K3X7C2_GLOUD4.180e-850.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89248contigM-pyrifera_M_contig89248:2..163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.2735763-CDS-M-pyrifera_M_contig89248:1..1631622816802.2735763-CDS-M-pyrifera_M_contig89248:1..163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89248 2..163 -
1692278187.3261814-CDS-M-pyrifera_M_contig89248:1..1631692278187.3261814-CDS-M-pyrifera_M_contig89248:1..163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89248 2..163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89248.20680.1prot_M-pyrifera_M_contig89248.20680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89248 2..163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89248.20680.1

>prot_M-pyrifera_M_contig89248.20680.1 ID=prot_M-pyrifera_M_contig89248.20680.1|Name=mRNA_M-pyrifera_M_contig89248.20680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MFDEKRRVGAFLLAIGAAFLGLGMLLFFDRALLALGNLLFVAAFPFLIGF
QRSV
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mRNA from alignment at M-pyrifera_M_contig89248:2..163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89248.20680.1 ID=mRNA_M-pyrifera_M_contig89248.20680.1|Name=mRNA_M-pyrifera_M_contig89248.20680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig89248:2..163- (Macrocystis pyrifera P11B4 male)
ATGTTCGACGAGAAGAGAAGGGTGGGAGCTTTTCTGCTCGCCATCGGCGC AGCATTCTTGGGTCTCGGGATGCTTCTCTTCTTTGACAGGGCACTGCTTG CCCTAGGAAACCTGCTCTTTGTTGCCGCCTTCCCCTTCCTCATCGGCTTC CAGCGATCCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89248:2..163-

>mRNA_M-pyrifera_M_contig89248.20680.1 ID=mRNA_M-pyrifera_M_contig89248.20680.1|Name=mRNA_M-pyrifera_M_contig89248.20680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig89248:2..163- (Macrocystis pyrifera P11B4 male)
ATGTTCGACGAGAAGAGAAGGGTGGGAGCTTTTCTGCTCGCCATCGGCGC
AGCATTCTTGGGTCTCGGGATGCTTCTCTTCTTTGACAGGGCACTGCTTG
CCCTAGGAAACCTGCTCTTTGTTGCCGCCTTCCCCTTCCTCATCGGCTTC
CAGCGATCCGTGATGTTCGACGAGAAGAGAAGGGTGGGAGCTTTTCTGCT
CGCCATCGGCGCAGCATTCTTGGGTCTCGGGATGCTTCTCTTCTTTGACA
GGGCACTGCTTGCCCTAGGAAACCTGCTCTTTGTTGCCGCCTTCCCCTTC
CTCATCGGCTTCCAGCGATCCGTG
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