mRNA_M-pyrifera_M_contig89243.20679.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89243.20679.1
Unique NamemRNA_M-pyrifera_M_contig89243.20679.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A3C1KRJ2_9GAMM (Fe-S cluster assembly protein SufD n=7 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KRJ2_9GAMM)

HSP 1 Score: 531 bits (1368), Expect = 4.980e-188
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARDA 807
            HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARDA
Sbjct:  159 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARDA 427          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A2E7C0K8_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C0K8_9GAMM)

HSP 1 Score: 494 bits (1273), Expect = 1.410e-173
Identity = 245/268 (91.42%), Postives = 257/268 (95.90%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            HIAWLTTGQ+ESIS+TQRLLVCL ENS ATLVESFANTATGGTAFTNG+TELL+ RGAQLNHYRLHLEQGD VHIGGVHARQEADS+LNGFHLALGSALKRIDLVV+ QG GAHCA+DGLYLPRGTETVDYHTCIEHAVPHCTS+ERFRGIIADEA+AVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPL LHYLRTRGVPR+EAEVMLSYGFINELVEA+ Q  +QAFLKPLLA RFARD
Sbjct:  159 HIAWLTTGQHESISVTQRLLVCLGENSGATLVESFANTATGGTAFTNGLTELLIGRGAQLNHYRLHLEQGDVVHIGGVHARQEADSVLNGFHLALGSALKRIDLVVNQQGPGAHCAVDGLYLPRGTETVDYHTCIEHAVPHCTSRERFRGIIADEASAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLTLHYLRTRGVPRDEAEVMLSYGFINELVEAVEQAELQAFLKPLLAHRFARD 426          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A2N5Y1S2_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y1S2_9GAMM)

HSP 1 Score: 448 bits (1152), Expect = 3.480e-155
Identity = 219/267 (82.02%), Postives = 244/267 (91.39%), Query Frame = 1
Query:    4 IAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            I WLT+GQ+ +IS+ QRLLV L  NS AT+VE+FAN  TGGT FTNGITELL+ RGA+LNHYRLHLEQG+AVHIGGVHAR + DSLLNGFH+ALGSALKRID+VVDHQGSG HC LDG+YLPR  E VDYHTCIEH+VPHC+S+ERFRGIIADEATA+FNGRIHIHPQAQKTRAELSNKNLLTSNKAE+NTKPELEIYADDVQCAHGATVAQLDP  L+YLRTRG+ +EEAEVMLSYGFINELVEAIA+P +Q +LKPLLARRF+RD
Sbjct:  160 IVWLTSGQSGAISMNQRLLVSLQANSQATVVETFANATTGGTPFTNGITELLVGRGARLNHYRLHLEQGNAVHIGGVHARLDQDSLLNGFHIALGSALKRIDVVVDHQGSGGHCELDGIYLPRDREIVDYHTCIEHSVPHCSSRERFRGIIADEATAIFNGRIHIHPQAQKTRAELSNKNLLTSNKAEVNTKPELEIYADDVQCAHGATVAQLDPSTLYYLRTRGISKEEAEVMLSYGFINELVEAIAEPGLQDYLKPLLARRFSRD 426          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A6C0U481_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U481_9GAMM)

HSP 1 Score: 447 bits (1151), Expect = 4.940e-155
Identity = 222/266 (83.46%), Postives = 240/266 (90.23%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFA 798
            H+ WLTTGQ + IS+TQRLLVCL  NS A+L ESFAN ATGGTAFTNGITELLL RG+ L+HYRLHLEQG AVHIGGVHAR   DS+L+GFHLALGSALKRIDLVVDHQG+GAHC LDG+YLPRG E VDYHTC+EH+V HC+S+ERFRGIIADEATAVFNGRIHIHPQAQKTRAELSN NLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDP  LHYLRTRG+PREEAEVMLSYGFINELVE + Q  V+ +LKPLLARRFA
Sbjct:  159 HVVWLTTGQTQPISVTQRLLVCLGPNSEASLTESFANIATGGTAFTNGITELLLERGSHLSHYRLHLEQGAAVHIGGVHARLGQDSVLSGFHLALGSALKRIDLVVDHQGTGAHCDLDGIYLPRGQEIVDYHTCMEHSVAHCSSRERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNNNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPHTLHYLRTRGIPREEAEVMLSYGFINELVENLTQTVVRDWLKPLLARRFA 424          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: UPI0019D3919C (Fe-S cluster assembly protein SufD n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3919C)

HSP 1 Score: 431 bits (1107), Expect = 2.730e-148
Identity = 211/268 (78.73%), Postives = 240/268 (89.55%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            H+ WLT+GQ +++S+TQRLLV +  NS AT+VESFANTATGGTAFTNGI+ELLLA GA+L+H RLHLEQG+AVHIGGVHA   A++ LNGFHLALGS LKRIDLVV+H+G GAHC L+G+YLPRG E VDYHTCIEHAVPHCTS E FRGII D A+A+FNGRIHIHPQAQKTRAELSNKNLLTS++AE+NTKPELEIYADDVQCAHGATVAQ+DP  LHYLRTRGVPR+EAEVMLSYGFINELVE++   AV  FLKP+LARRFAR+
Sbjct:  158 HLVWLTSGQVDALSVTQRLLVRMGANSQATVVESFANTATGGTAFTNGISELLLADGARLDHCRLHLEQGEAVHIGGVHATLAANATLNGFHLALGSRLKRIDLVVEHRGQGAHCELNGIYLPRGEEQVDYHTCIEHAVPHCTSNETFRGIIGDSASAIFNGRIHIHPQAQKTRAELSNKNLLTSHQAEVNTKPELEIYADDVQCAHGATVAQMDPATLHYLRTRGVPRDEAEVMLSYGFINELVESVHCAAVHDFLKPMLARRFARN 425          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A5C9A067_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C9A067_9GAMM)

HSP 1 Score: 426 bits (1094), Expect = 3.040e-146
Identity = 208/268 (77.61%), Postives = 235/268 (87.69%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            H+ WLT+GQ +++S+ QRLLV L  NS A++VESFANT TGGTAFTNGITELLL  GAQLNHYRL LEQG+AVHIGGVHA   A+S LN FHLALGS LKR+DLV +H+G GAHC L+G+YLPRG E VDYHTCIEHAVPHCTS E FRGII DEATA+FNGRIHIHP AQKTRAELSNKNLLTSN+AE+NTKPELEIYADDVQCAHGATVAQ+DP +LHYLRTRGVP++EAEVMLSYGFINELV+ I    ++ FLKP+LARRFAR+
Sbjct:  158 HLVWLTSGQVDALSVNQRLLVQLGANSQASVVESFANTDTGGTAFTNGITELLLGDGAQLNHYRLQLEQGEAVHIGGVHAALAANSTLNSFHLALGSRLKRVDLVAEHRGQGAHCELNGIYLPRGEEQVDYHTCIEHAVPHCTSSETFRGIIGDEATAIFNGRIHIHPDAQKTRAELSNKNLLTSNRAEVNTKPELEIYADDVQCAHGATVAQMDPASLHYLRTRGVPKDEAEVMLSYGFINELVDGIRCEDLRNFLKPMLARRFARN 425          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: UPI000E2E83EE (Fe-S cluster assembly protein SufD n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI000E2E83EE)

HSP 1 Score: 420 bits (1080), Expect = 4.790e-144
Identity = 201/268 (75.00%), Postives = 236/268 (88.06%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            H+ WLT+GQ E++S+ QRLLV L  NS A++VE+F+N  TGGTAFTNGI+ELLL  GA+L+HYRL LEQG++ HIGGVHA  +A+S LN FHLALGS LKRIDLVV+H+G GAHC L+G+YLPRG E VDYHTCIEHAVPHCTS E FRGI++DEA A+FNGRIHIHP AQKTRAELSNKNLLTSN+AE+NTKPELEIYADDVQCAHGATVAQ+DPL LHYLRTRGVP++EAEVM+SYGFINELV+ +   A++ +LKPLLARRFAR+
Sbjct:  158 HLVWLTSGQMEAVSVNQRLLVQLGANSQASVVETFSNANTGGTAFTNGISELLLGEGARLDHYRLQLEQGESAHIGGVHAAIDANSTLNSFHLALGSRLKRIDLVVEHRGQGAHCELNGIYLPRGEEQVDYHTCIEHAVPHCTSSETFRGIVSDEACAIFNGRIHIHPNAQKTRAELSNKNLLTSNRAEVNTKPELEIYADDVQCAHGATVAQMDPLTLHYLRTRGVPKDEAEVMISYGFINELVDGVRNKALRDYLKPLLARRFARN 425          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A2D5FCM8_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FCM8_9GAMM)

HSP 1 Score: 419 bits (1076), Expect = 1.210e-143
Identity = 206/267 (77.15%), Postives = 237/267 (88.76%), Query Frame = 1
Query:    4 IAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            I WLT+G + +++++QRLLV    +S ATLVE+FA++ TG TAFTNG++ELLL  GA+L H RLHLEQ +AVHIGGVH RQ A+S L GFHLALGS LKRIDLVVDHQG+GAHC LDG+YLPRG+ETVDYHTCIEH+VPHCTS+ERFRGI+ DEA+A+FNGRIHIHPQAQKTRAELSNKNLLTS+KAE+NTKPELEIYADDVQCAHGATVAQLDP+  HYLRTRGVPREEAEVMLSYGFINELVE +   AV+ F+KPLLA RFAR+
Sbjct:  160 IVWLTSGADAALALSQRLLVNCGAHSEATLVETFASSDTGATAFTNGVSELLLGEGARLQHCRLHLEQDNAVHIGGVHIRQSANSQLYGFHLALGSDLKRIDLVVDHQGAGAHCELDGIYLPRGSETVDYHTCIEHSVPHCTSRERFRGIVGDEASAIFNGRIHIHPQAQKTRAELSNKNLLTSHKAEVNTKPELEIYADDVQCAHGATVAQLDPMTRHYLRTRGVPREEAEVMLSYGFINELVEDLPCAAVRDFVKPLLASRFARN 426          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A5C9A3D3_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Parahaliea aestuarii TaxID=1852021 RepID=A0A5C9A3D3_9GAMM)

HSP 1 Score: 417 bits (1073), Expect = 4.680e-143
Identity = 202/268 (75.37%), Postives = 231/268 (86.19%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            H+ WLT+GQ E++S+ QRLLV L  NS A++VE+F N  TGGTAFTNGI+ELLL  GA+L+HYRLHLEQG+A HIGGVHA    +S LN FHLALGS LKRIDLV +H+G GAHC L+G+YLPRG E VDYHTCIEHAVPHCTS E FRGII DEATA+FNGRIHIHP AQKT AELSNKNLLTSN+AE+NTKPELEIYADDVQCAHGATVAQ+DPL LHYLRTRGVP++EAEVM+SYGFINELV+ +    ++ FLKPLLARRFAR+
Sbjct:  158 HLVWLTSGQGEAVSVNQRLLVQLGANSQASVVETFCNANTGGTAFTNGISELLLGDGARLDHYRLHLEQGEAAHIGGVHAALAGNSTLNSFHLALGSRLKRIDLVAEHRGQGAHCELNGIYLPRGEEQVDYHTCIEHAVPHCTSSETFRGIIGDEATAIFNGRIHIHPDAQKTCAELSNKNLLTSNRAEVNTKPELEIYADDVQCAHGATVAQMDPLTLHYLRTRGVPKDEAEVMISYGFINELVDGVRCEPLRDFLKPLLARRFARN 425          
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Match: A0A7W2TWT0_9GAMM (Fe-S cluster assembly protein SufD n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TWT0_9GAMM)

HSP 1 Score: 409 bits (1050), Expect = 1.040e-139
Identity = 200/268 (74.63%), Postives = 232/268 (86.57%), Query Frame = 1
Query:    1 HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGITELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALKRIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRGIIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYADDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQPAVQAFLKPLLARRFARD 804
            H+ WL++GQ +++S+ QRLLV L  NS AT+VESFANTATGGTAFTNGI+EL L  GA L+HYRLHLEQ +AVHIGGVHA   A S LN FHLALGS LKRID+VV+H+G GAHC ++G+YLPRG E VDYHTC+EHAVP+CTS E FRGIIAD+A+AVFNGRIHIHP AQKTRAELSNKNLLTSN+AE+NTKPELEIYADDVQCAHGATVAQ+DP  LHYLR RG+ + EAEVMLS+GFINELVEAI   A++ +LKPLLARRF+ +
Sbjct:  158 HLVWLSSGQVDALSVNQRLLVELGANSKATVVESFANTATGGTAFTNGISELQLGDGAILDHYRLHLEQAEAVHIGGVHATLNASSTLNSFHLALGSTLKRIDIVVEHRGQGAHCEVNGIYLPRGEEQVDYHTCMEHAVPNCTSSETFRGIIADQASAVFNGRIHIHPDAQKTRAELSNKNLLTSNQAEVNTKPELEIYADDVQCAHGATVAQMDPATLHYLRARGISKAEAEVMLSFGFINELVEAIRCEAIRDYLKPLLARRFSHN 425          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89243.20679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KRJ2_9GAMM4.980e-188100.00Fe-S cluster assembly protein SufD n=7 Tax=Halieac... [more]
A0A2E7C0K8_9GAMM1.410e-17391.42Fe-S cluster assembly protein SufD n=1 Tax=Haliea ... [more]
A0A2N5Y1S2_9GAMM3.480e-15582.02Fe-S cluster assembly protein SufD n=1 Tax=Kineoba... [more]
A0A6C0U481_9GAMM4.940e-15583.46Fe-S cluster assembly protein SufD n=1 Tax=Kineoba... [more]
UPI0019D3919C2.730e-14878.73Fe-S cluster assembly protein SufD n=1 Tax=Parahal... [more]
A0A5C9A067_9GAMM3.040e-14677.61Fe-S cluster assembly protein SufD n=1 Tax=Parahal... [more]
UPI000E2E83EE4.790e-14475.00Fe-S cluster assembly protein SufD n=1 Tax=Parahal... [more]
A0A2D5FCM8_9GAMM1.210e-14377.15Fe-S cluster assembly protein SufD n=1 Tax=Haliea ... [more]
A0A5C9A3D3_9GAMM4.680e-14375.37Fe-S cluster assembly protein SufD n=1 Tax=Parahal... [more]
A0A7W2TWT0_9GAMM1.040e-13974.63Fe-S cluster assembly protein SufD n=1 Tax=Sedimin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89243contigM-pyrifera_M_contig89243:2..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score535.4
Seed ortholog evalue1.5e-149
Seed eggNOG ortholog1121937.AUHJ01000004_gene1074
Preferred namesufD
KEGG koko:K07033,ko:K09015
Hectar predicted targeting categoryother localisation
GOsGO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0040007,GO:0043207,GO:0044085,GO:0044237,GO:0044403,GO:0044419,GO:0050896,GO:0051186,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0071840,GO:0075136
EggNOG free text desc.COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component
EggNOG OGs1MVK0@1224,1RP2A@1236,4644K@72275,COG0719@1,COG0719@2
COG Functional cat.O
BiGG ReactioniB21_1397.B21_01640,iECBD_1354.ECBD_1964,iECB_1328.ECB_01650,iECD_1391.ECD_01650,iUMNK88_1353.UMNK88_2144
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size807
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.240628-CDS-M-pyrifera_M_contig89243:1..8081622816802.240628-CDS-M-pyrifera_M_contig89243:1..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89243 2..808 +
1692278187.3125226-CDS-M-pyrifera_M_contig89243:1..8081692278187.3125226-CDS-M-pyrifera_M_contig89243:1..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89243 2..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89243.20679.1prot_M-pyrifera_M_contig89243.20679.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89243 2..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89243.20679.1

>prot_M-pyrifera_M_contig89243.20679.1 ID=prot_M-pyrifera_M_contig89243.20679.1|Name=mRNA_M-pyrifera_M_contig89243.20679.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=269bp
HIAWLTTGQNESISITQRLLVCLAENSSATLVESFANTATGGTAFTNGIT
ELLLARGAQLNHYRLHLEQGDAVHIGGVHARQEADSLLNGFHLALGSALK
RIDLVVDHQGSGAHCALDGLYLPRGTETVDYHTCIEHAVPHCTSQERFRG
IIADEATAVFNGRIHIHPQAQKTRAELSNKNLLTSNKAEINTKPELEIYA
DDVQCAHGATVAQLDPLALHYLRTRGVPREEAEVMLSYGFINELVEAIAQ
PAVQAFLKPLLARRFARDA
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mRNA from alignment at M-pyrifera_M_contig89243:2..808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89243.20679.1 ID=mRNA_M-pyrifera_M_contig89243.20679.1|Name=mRNA_M-pyrifera_M_contig89243.20679.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig89243:2..808+ (Macrocystis pyrifera P11B4 male)
CACATTGCCTGGCTAACCACCGGGCAGAATGAATCGATCAGCATCACCCA GCGCCTGCTGGTGTGCCTCGCGGAGAACAGCAGTGCCACGCTGGTTGAGT CTTTCGCCAACACGGCGACCGGAGGCACGGCATTCACCAACGGTATTACC GAATTGCTGCTGGCCCGCGGCGCGCAGCTGAACCACTACCGCCTGCACCT GGAGCAGGGTGACGCGGTGCATATTGGCGGCGTACATGCGCGGCAGGAAG CAGACAGCCTGCTGAACGGCTTTCACCTTGCCCTGGGCAGCGCGCTGAAA CGTATTGACCTGGTAGTGGACCACCAGGGCAGCGGCGCCCATTGCGCACT GGACGGCCTGTACCTGCCCCGCGGCACCGAAACCGTGGACTACCACACCT GCATTGAACATGCTGTCCCGCACTGCACCAGCCAGGAGCGCTTCCGCGGC ATCATCGCCGATGAAGCCACTGCGGTTTTCAACGGGCGGATTCATATCCA CCCGCAGGCACAGAAAACCCGCGCGGAGCTGAGCAACAAGAACCTGCTGA CCAGCAACAAGGCGGAAATCAACACCAAGCCGGAGCTGGAAATCTACGCC GATGACGTGCAGTGTGCCCACGGTGCTACCGTTGCCCAGCTGGACCCGCT CGCCCTGCACTACCTGCGCACCCGCGGTGTGCCGCGCGAAGAGGCCGAAG TGATGCTGAGCTACGGCTTTATCAACGAACTGGTGGAGGCTATCGCGCAA CCGGCCGTGCAGGCGTTTCTCAAGCCCCTCCTGGCCAGGCGTTTCGCGCG CGATGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89243:2..808+

>mRNA_M-pyrifera_M_contig89243.20679.1 ID=mRNA_M-pyrifera_M_contig89243.20679.1|Name=mRNA_M-pyrifera_M_contig89243.20679.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1614bp|location=Sequence derived from alignment at M-pyrifera_M_contig89243:2..808+ (Macrocystis pyrifera P11B4 male)
CACATTGCCTGGCTAACCACCGGGCAGAATGAATCGATCAGCATCACCCA
GCGCCTGCTGGTGTGCCTCGCGGAGAACAGCAGTGCCACGCTGGTTGAGT
CTTTCGCCAACACGGCGACCGGAGGCACGGCATTCACCAACGGTATTACC
GAATTGCTGCTGGCCCGCGGCGCGCAGCTGAACCACTACCGCCTGCACCT
GGAGCAGGGTGACGCGGTGCATATTGGCGGCGTACATGCGCGGCAGGAAG
CAGACAGCCTGCTGAACGGCTTTCACCTTGCCCTGGGCAGCGCGCTGAAA
CGTATTGACCTGGTAGTGGACCACCAGGGCAGCGGCGCCCATTGCGCACT
GGACGGCCTGTACCTGCCCCGCGGCACCGAAACCGTGGACTACCACACCT
GCATTGAACATGCTGTCCCGCACTGCACCAGCCAGGAGCGCTTCCGCGGC
ATCATCGCCGATGAAGCCACTGCGGTTTTCAACGGGCGGATTCATATCCA
CCCGCAGGCACAGAAAACCCGCGCGGAGCTGAGCAACAAGAACCTGCTGA
CCAGCAACAAGGCGGAAATCAACACCAAGCCGGAGCTGGAAATCTACGCC
GATGACGTGCAGTGTGCCCACGGTGCTACCGTTGCCCAGCTGGACCCGCT
CGCCCTGCACTACCTGCGCACCCGCGGTGTGCCGCGCGAAGAGGCCGAAG
TGATGCTGAGCTACGGCTTTATCAACGAACTGGTGGAGGCTATCGCGCAA
CCGGCCGTGCAGGCGTTTCTCAAGCCCCTCCTGGCCAGGCGTTTCGCGCG
CGATGCACACATTGCCTGGCTAACCACCGGGCAGAATGAATCGATCAGCA
TCACCCAGCGCCTGCTGGTGTGCCTCGCGGAGAACAGCAGTGCCACGCTG
GTTGAGTCTTTCGCCAACACGGCGACCGGAGGCACGGCATTCACCAACGG
TATTACCGAATTGCTGCTGGCCCGCGGCGCGCAGCTGAACCACTACCGCC
TGCACCTGGAGCAGGGTGACGCGGTGCATATTGGCGGCGTACATGCGCGG
CAGGAAGCAGACAGCCTGCTGAACGGCTTTCACCTTGCCCTGGGCAGCGC
GCTGAAACGTATTGACCTGGTAGTGGACCACCAGGGCAGCGGCGCCCATT
GCGCACTGGACGGCCTGTACCTGCCCCGCGGCACCGAAACCGTGGACTAC
CACACCTGCATTGAACATGCTGTCCCGCACTGCACCAGCCAGGAGCGCTT
CCGCGGCATCATCGCCGATGAAGCCACTGCGGTTTTCAACGGGCGGATTC
ATATCCACCCGCAGGCACAGAAAACCCGCGCGGAGCTGAGCAACAAGAAC
CTGCTGACCAGCAACAAGGCGGAAATCAACACCAAGCCGGAGCTGGAAAT
CTACGCCGATGACGTGCAGTGTGCCCACGGTGCTACCGTTGCCCAGCTGG
ACCCGCTCGCCCTGCACTACCTGCGCACCCGCGGTGTGCCGCGCGAAGAG
GCCGAAGTGATGCTGAGCTACGGCTTTATCAACGAACTGGTGGAGGCTAT
CGCGCAACCGGCCGTGCAGGCGTTTCTCAAGCCCCTCCTGGCCAGGCGTT
TCGCGCGCGATGCA
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