mRNA_M-pyrifera_M_contig89193.20674.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89193.20674.1
Unique NamemRNA_M-pyrifera_M_contig89193.20674.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: A0A1D1ZW40_AUXPR (Bromo domain-containing protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZW40_AUXPR)

HSP 1 Score: 72.0 bits (175), Expect = 1.140e-12
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 ELVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTAAA 252
            +++S   +KDT+G F  PV D VAPGYSK++++P+ +  +R+ L  GHY S   L  D+  ++ NA  YNP GS V+  AA
Sbjct:  341 KILSRVQKKDTHGIFRDPVTDDVAPGYSKVINEPMDFTTMRRNLAAGHYTSWDALEVDLQLMFRNAQTYNPPGSEVHGYAA 421          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: A0A061R8U7_9CHLO (Bromodomain-containing protein 7/9 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R8U7_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   13 LVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTAAAE 255
            L+    + DT  +F  PV +AVAPGY  I+  P+C+Q +R++LRG  YR+      D   + +NA  YN + S ++ AAA+
Sbjct:   84 LLGKLSQLDTASFFQAPVSEAVAPGYFNIIKRPMCFQRMREKLRGREYRTWRSFVEDFELICNNATTYNQKRSKIHKAAAQ 164          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: A0A8B7NCE2_HYAAZ (bromodomain-containing protein 7-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NCE2_HYAAZ)

HSP 1 Score: 62.8 bits (151), Expect = 2.040e-9
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   13 LVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTA 246
            L+    +KD N +FL PV D +APGYS I+++P+C+  +R+++  G Y S+ E   D+  + +N   YN   +  Y+A
Sbjct:  123 LLKQLEKKDINQFFLEPVTDLIAPGYSSIITEPMCFYTMREKIAQGAYSSLTEYEDDVKLIVANCLKYNGPDTVYYSA 200          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: UPI000A2A9D25 (bromodomain-containing protein 9 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9D25)

HSP 1 Score: 59.7 bits (143), Expect = 5.090e-9
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   13 LVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTAA 249
            L++    KD  G+F  PV+DA+APGYS+++  P+ +  +R ++  G Y ++     D   + +NA +YN   +  Y AA
Sbjct:   71 LLTIIQRKDVQGFFAFPVNDAIAPGYSRVIEKPMDFSTIRNKIDSGQYTTIEGFRDDFHLMCNNATIYNAPDTIYYKAA 149          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: B8C0I0_THAPS (Bromo domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0I0_THAPS)

HSP 1 Score: 61.6 bits (148), Expect = 5.420e-9
Identity = 24/69 (34.78%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   13 LVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYN 219
            ++++  E D  G FL PV DA+APGYS ++S+P+C + + +++    Y+ + E   D + ++SN   YN
Sbjct:  540 MITSMRENDPQGLFLNPVTDAIAPGYSLVISEPMCIRTMEEKMMESEYKKIDEFKDDTMLMFSNCVKYN 608          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: A0A6P8I8H2_ACTTE (bromodomain-containing protein 7-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I8H2_ACTTE)

HSP 1 Score: 60.5 bits (145), Expect = 1.360e-8
Identity = 26/87 (29.89%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   22 TFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTAAAEFEPLAIKSL 282
            T   KD  G+F  PV+DA+APGYS+++ +P+ +  ++ ++    Y S+     D   + +NA +YN   +  Y AA     + +K +
Sbjct:  173 TLQRKDVQGFFAFPVNDAIAPGYSRVIENPMDFSTIKNKIDNCQYASIEAFRDDFYLMCNNATIYNAPDTIYYKAAKRLLQIGVKMM 259          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: A0A6A7FR59_9CRUS (Bromodomain-containing protein 7-like (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FR59_9CRUS)

HSP 1 Score: 60.1 bits (144), Expect = 1.830e-8
Identity = 25/78 (32.05%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   13 LVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTA 246
            L+    ++D+N +F+ PV DA+APGYS I++ P+C+  +R+++ G  Y ++ +   D+  + +N   YN   +  Y+A
Sbjct:  150 LLKQLEKRDSNQFFIEPVTDAIAPGYSSIITQPMCFTSMREKVAGDQYTTMHQFEEDVKLMVANCLQYNGSETVYYSA 227          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: UPI00109B9D25 (bromodomain-containing protein 7 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B9D25)

HSP 1 Score: 59.7 bits (143), Expect = 2.520e-8
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   13 LVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTAA 249
            L++    KD  G+F  PV+DA+APGYS+++  P+ +  +R ++  G Y ++     D   + +NA +YN   +  Y AA
Sbjct:  164 LLTIIQRKDVQGFFAFPVNDAIAPGYSRVIEKPMDFSTIRNKIDSGQYTTIEGFRDDFHLMCNNATIYNAPDTIYYKAA 242          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: A0A7J7KRD2_BUGNE (Bromo domain-containing protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KRD2_BUGNE)

HSP 1 Score: 59.7 bits (143), Expect = 2.620e-8
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   31 EKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNP 222
            E     WFL PV D  APGYS I+S P+    ++++L    Y S+ +   DM+ +YSN  +YNP
Sbjct: 1584 EHGAAAWFLKPVSDDEAPGYSAIISQPMDLSTVKRKLETNQYSSLEDFKSDMMLIYSNCCVYNP 1647          
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Match: S4RJQ4_PETMA (Bromo domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RJQ4_PETMA)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-8
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   34 KDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGGHYRSVAELACDMLRVYSNAYLYNPRGSPVYTAAAE 255
            KD +G+FL PV D +APGYS I+  P+ +  +R+++    Y+SV E   D   +  NA  YN R   +Y  AA+
Sbjct:  148 KDPSGFFLFPVTDVIAPGYSMIIKVPMDFSTMREKIDHNEYQSVTEFKSDFKLMCDNAMTYN-RPETIYYKAAK 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89193.20674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D1ZW40_AUXPR1.140e-1243.21Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A061R8U7_9CHLO1.820e-1038.27Bromodomain-containing protein 7/9 (Fragment) n=1 ... [more]
A0A8B7NCE2_HYAAZ2.040e-935.90bromodomain-containing protein 7-like n=1 Tax=Hyal... [more]
UPI000A2A9D255.090e-932.91bromodomain-containing protein 9 n=1 Tax=Exaiptasi... [more]
B8C0I0_THAPS5.420e-934.78Bromo domain-containing protein n=1 Tax=Thalassios... [more]
A0A6P8I8H2_ACTTE1.360e-829.89bromodomain-containing protein 7-like n=1 Tax=Acti... [more]
A0A6A7FR59_9CRUS1.830e-832.05Bromodomain-containing protein 7-like (Fragment) n... [more]
UPI00109B9D252.520e-832.91bromodomain-containing protein 7 n=1 Tax=Exaiptasi... [more]
A0A7J7KRD2_BUGNE2.620e-840.63Bromo domain-containing protein n=1 Tax=Bugula ner... [more]
S4RJQ4_PETMA3.420e-839.19Bromo domain-containing protein n=1 Tax=Petromyzon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89193contigM-pyrifera_M_contig89193:374..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog3055.EDP04167
KEGG koko:K22184
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0002576,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016192,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0031248,GO:0031974,GO:0031981,GO:0032940,GO:0032991,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0051276,GO:0070013,GO:0070577,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0140030,GO:0140033,GO:1901564,GO:1902493,GO:1902494,GO:1990234
EggNOG free text desc.Bromodomain-containing protein
EggNOG OGs37R6H@33090,COG5141@1,KOG0955@2759
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.0624757-CDS-M-pyrifera_M_contig89193:373..6581622816802.0624757-CDS-M-pyrifera_M_contig89193:373..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89193 374..658 -
1692278187.2131517-CDS-M-pyrifera_M_contig89193:373..6581692278187.2131517-CDS-M-pyrifera_M_contig89193:373..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89193 374..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89193.20674.1prot_M-pyrifera_M_contig89193.20674.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89193 374..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89193.20674.1

>prot_M-pyrifera_M_contig89193.20674.1 ID=prot_M-pyrifera_M_contig89193.20674.1|Name=mRNA_M-pyrifera_M_contig89193.20674.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MGLELVSTFWEKDTNGWFLLPVDDAVAPGYSKIVSDPICYQDLRQRLRGG
HYRSVAELACDMLRVYSNAYLYNPRGSPVYTAAAEFEPLAIKSLA
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mRNA from alignment at M-pyrifera_M_contig89193:374..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89193.20674.1 ID=mRNA_M-pyrifera_M_contig89193.20674.1|Name=mRNA_M-pyrifera_M_contig89193.20674.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig89193:374..658- (Macrocystis pyrifera P11B4 male)
ATGGGACTAGAGTTGGTGTCCACATTTTGGGAAAAGGATACGAATGGATG GTTTTTGCTCCCTGTGGATGATGCTGTTGCACCAGGATATTCAAAAATCG TATCAGATCCTATATGTTACCAAGATTTGAGGCAACGACTTCGAGGGGGA CACTATCGCTCTGTAGCTGAGTTGGCGTGCGATATGTTGCGTGTGTATTC CAATGCTTATCTGTACAACCCTCGTGGGTCTCCAGTGTACACAGCAGCTG CAGAATTTGAACCTCTAGCAATCAAAAGTTTAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89193:374..658-

>mRNA_M-pyrifera_M_contig89193.20674.1 ID=mRNA_M-pyrifera_M_contig89193.20674.1|Name=mRNA_M-pyrifera_M_contig89193.20674.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig89193:374..658- (Macrocystis pyrifera P11B4 male)
ATGGGACTAGAGTTGGTGTCCACATTTTGGGAAAAGGATACGAATGGATG
GTTTTTGCTCCCTGTGGATGATGCTGTTGCACCAGGATATTCAAAAATCG
TATCAGATCCTATATGTTACCAAGATTTGAGGCAACGACTTCGAGGGGGA
CACTATCGCTCTGTAGCTGAGTTGGCGTGCGATATGTTGCGTGTGTATTC
CAATGCTTATCTGTACAACCCTCGTGGGTCTCCAGTGTACACAGCAGCTG
CAGAATTTGAACCTCTAGCAATCAAAAGTTTAGCGATGGGACTAGAGTTG
GTGTCCACATTTTGGGAAAAGGATACGAATGGATGGTTTTTGCTCCCTGT
GGATGATGCTGTTGCACCAGGATATTCAAAAATCGTATCAGATCCTATAT
GTTACCAAGATTTGAGGCAACGACTTCGAGGGGGACACTATCGCTCTGTA
GCTGAGTTGGCGTGCGATATGTTGCGTGTGTATTCCAATGCTTATCTGTA
CAACCCTCGTGGGTCTCCAGTGTACACAGCAGCTGCAGAATTTGAACCTC
TAGCAATCAAAAGTTTAGCG
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