mRNA_M-pyrifera_M_contig89192.20673.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89192.20673.1
Unique NamemRNA_M-pyrifera_M_contig89192.20673.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A137P3L5_CONC2 (Integrin alpha N-terminal domain-containing protein (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P3L5_CONC2)

HSP 1 Score: 75.1 bits (183), Expect = 8.740e-14
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAA---RNLTFLGSSLATADINGDGLQDLLIGSPFA 303
            + GKS+ V+D+NGDGI+DL+V  P     P  +L+     EY G + +YLG+ +  L LN+PP    I      RN T  GS+L + DIN D  +DL++G P++
Sbjct:  188 QFGKSLAVLDFNGDGIEDLIVGGP--NYEPGKDLN----DEYSGSINIYLGNSNWDLILNRPPITLPIPKLLKYRNYTQFGSNLYSIDINNDNKKDLILGLPYS 285          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A0M0JCC5_9EUKA (Phosphatidylinositol-glycan-specific phospholipase D n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCC5_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 5.140e-12
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPL--------ARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTFLGSSLATADINGDGLQDLLIGSPFA 303
            R G ++VV+DWN DGIDDL V AP         A A+P+  L+  P +   G V VYLG K +GL +  P     +  +   T LG +LA AD+  DG  DLL+G P A
Sbjct:  318 RFGSTLVVLDWNLDGIDDLAVGAPGWSGWNTSDAAASPFP-LNGDPTYRNYGRVFVYLGSKGSGLQVAAP---IVLTTSNVFTGLGWALAAADVTSDGHSDLLLGCPQA 422          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A2B4SZP2_STYPI (Phosphatidylinositol-glycan-specific phospholipase D n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SZP2_STYPI)

HSP 1 Score: 70.1 bits (170), Expect = 7.090e-12
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTF--LGSSLATADINGDGLQDLLIGSPFA 303
            R G ++  +D+N DG+DDLVVSAP   A          + +Y G V ++ G K  GL ++ P    H     N T+  LG+SL  ADI+GDG +DL+IGSP+A
Sbjct:  469 RFGTALAAVDFNKDGVDDLVVSAPATGAN---------DLQYTGTVYIFFGTKGEGL-IHHPSVTIH----GNGTYYNLGTSLLGADIDGDGFKDLIIGSPYA 557          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: X0RU47_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0RU47_9ZZZZ)

HSP 1 Score: 68.6 bits (166), Expect = 2.380e-11
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTG--LALNQPPDGAHIQAARNLTFLGSSLATADINGDGLQDLLIGSPFA 303
             LG S+   D NGDGIDD++VSAP +     D  +        G+V V  G    G  + + + P    I AA   + LG S+A  D+NGDG+ D+++G+PFA
Sbjct:  156 NLGFSVAGGDVNGDGIDDIIVSAPFSEGPSADFRT------DRGEVYVIFGRSGLGGTIDIAEEPQDVTIIAAEGFSLLGDSIAIGDVNGDGIDDMVLGAPFA 252          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A8J8NES1_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NES1_HALGN)

HSP 1 Score: 67.0 bits (162), Expect = 8.430e-11
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTF--LGSSLATADINGDGLQDLLIGSPFA 303
            R G S+V +D N DG+DDLVVS+P        ++       Y G V VYLG K  G+    PPD           F  LG +L  +D NGDG QDL++ SP +
Sbjct:  307 RFGYSLVAIDVNRDGVDDLVVSSPAYGPGGATDIGDYYAKSYYGRVHVYLGTKGFGIKKGSPPDFTIKARTETDIFMNLGQNLRVSDCNGDGKQDLIVLSPMS 409          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: UPI0009E23070 (phosphatidylinositol-glycan-specific phospholipase D-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E23070)

HSP 1 Score: 67.0 bits (162), Expect = 8.720e-11
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTFLGSSLATADINGDGLQDLLIGSPFA 303
            R G ++ V+D NGDG+DDL VSAP   A          + +Y G V ++ G K  G  L   P  A I        LG+SL  AD++GDG +DL+IGSP+A
Sbjct:  470 RFGTAVAVVDLNGDGVDDLAVSAPSTGAN---------DLQYTGTVYLFYGVK--GERLGTKPSLA-IHGNGTYYNLGTSLLGADVDGDGFKDLIIGSPYA 558          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A8H7UBD3_9FUNG (Phosphatidylinositol-glycan-specific phospholipase D n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UBD3_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 2.170e-10
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTF-LGSSLATADINGDGLQDLLIGSPF 300
            R G SMVV+D+N DGIDDL V++P               F  PG+  + + +   G+ L++ PD   +   R   +  GSSL   DINGDG +DL++G P+
Sbjct:  448 RFGWSMVVLDFNHDGIDDLAVASP---------------FGEPGEGFINIYYGKAGVGLSEKPDVIVLLPQRKNNYGFGSSLYAIDINGDGKKDLVVGCPY 533          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: UPI0018F4A45A (phosphatidylinositol-glycan-specific phospholipase D isoform X1 n=3 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F4A45A)

HSP 1 Score: 63.2 bits (152), Expect = 1.920e-9
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTFLGSSLATADINGDGLQDLLIGSPFA 303
            R G ++ VMDWN DG+ DL V AP   +   D L+      Y G V VY G +  GL+   P     I         G +L  AD++GD + DL++GSP+A
Sbjct:  451 RFGSAVAVMDWNRDGVPDLAVGAPSVGS---DRLN------YTGAVYVYFGIRGKGLS---PHPDVTISCQETYCNFGWTLLAADVDGDEVVDLVVGSPYA 539          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A831T6Q8_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A831T6Q8_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.980e-9
Identity = 39/100 (39.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:    4 LGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQ--AARNLTFLGSSLATADINGDGLQDLLIGSP 297
            LG S+   D N DGIDD++  AP A A         P    PG V V  G ++ G  LN     A +     R    LG SLA AD+NG+G+ D++IG+P
Sbjct:  934 LGASVASADVNADGIDDIIAGAPQADA---------PGRTDPGKVYVIFGKRNLGGLLNLASQSADVTIIGERANDLLGKSLAAADVNGNGIADIIIGAP 1024          
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Match: A0A452HFA0_9SAUR (Glycosylphosphatidylinositol specific phospholipase D1 n=1 Tax=Gopherus agassizii TaxID=38772 RepID=A0A452HFA0_9SAUR)

HSP 1 Score: 62.4 bits (150), Expect = 3.490e-9
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = 1
Query:    1 RLGKSMVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHTGLALNQPPDGAHIQAARNLTFLGSSLATADINGDGLQDLLIGSPFA 303
            R G ++ V+D+N DG+ D+VV AP   +             Y G V VYLG    GL+   P     I        LG SL  ADI+GDG  DL++GSP+A
Sbjct:  228 RFGSAIAVLDFNEDGVPDVVVGAPSVGSQ---------NLTYTGAVYVYLGITGRGLS---PWPNITIICQHTFCNLGWSLLAADIDGDGKSDLVVGSPYA 316          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89192.20673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A137P3L5_CONC28.740e-1440.38Integrin alpha N-terminal domain-containing protei... [more]
A0A0M0JCC5_9EUKA5.140e-1242.20Phosphatidylinositol-glycan-specific phospholipase... [more]
A0A2B4SZP2_STYPI7.090e-1241.75Phosphatidylinositol-glycan-specific phospholipase... [more]
X0RU47_9ZZZZ2.380e-1137.86Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A8J8NES1_HALGN8.430e-1139.81Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
UPI0009E230708.720e-1141.58phosphatidylinositol-glycan-specific phospholipase... [more]
A0A8H7UBD3_9FUNG2.170e-1037.62Phosphatidylinositol-glycan-specific phospholipase... [more]
UPI0018F4A45A1.920e-937.62phosphatidylinositol-glycan-specific phospholipase... [more]
A0A831T6Q8_9BACT1.980e-939.00Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]
A0A452HFA0_9SAUR3.490e-938.61Glycosylphosphatidylinositol specific phospholipas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89192contigM-pyrifera_M_contig89192:247..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue5.1e-07
Seed eggNOG ortholog588596.U9T196
KEGG koko:K01127
KEGG ReactionR06623
KEGG Pathwayko00563,map00563
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrin alpha (beta-propellor repeats).
EggNOG OGs38DDW@33154,3Q61R@4751,KOG3637@1,KOG3637@2759
EC3.1.4.50
COG Functional cat.W
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size303
Cds size288
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.0105212-UTR-M-pyrifera_M_contig89192:246..2611622816802.0105212-UTR-M-pyrifera_M_contig89192:246..261Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89192 247..261 +
1692278187.1846316-UTR-M-pyrifera_M_contig89192:246..2611692278187.1846316-UTR-M-pyrifera_M_contig89192:246..261Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89192 247..261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.0290036-CDS-M-pyrifera_M_contig89192:261..5491622816802.0290036-CDS-M-pyrifera_M_contig89192:261..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89192 262..549 +
1692278187.1993847-CDS-M-pyrifera_M_contig89192:261..5491692278187.1993847-CDS-M-pyrifera_M_contig89192:261..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89192 262..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89192.20673.1prot_M-pyrifera_M_contig89192.20673.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89192 262..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89192.20673.1

>prot_M-pyrifera_M_contig89192.20673.1 ID=prot_M-pyrifera_M_contig89192.20673.1|Name=mRNA_M-pyrifera_M_contig89192.20673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MVVMDWNGDGIDDLVVSAPLARAAPWDELSLVPEFEYPGDVLVYLGHKHT
GLALNQPPDGAHIQAARNLTFLGSSLATADINGDGLQDLLIGSPFA
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mRNA from alignment at M-pyrifera_M_contig89192:247..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89192.20673.1 ID=mRNA_M-pyrifera_M_contig89192.20673.1|Name=mRNA_M-pyrifera_M_contig89192.20673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig89192:247..549+ (Macrocystis pyrifera P11B4 male)
AGGTTGGGAAAGAGTATGGTGGTGATGGACTGGAATGGAGATGGGATTGA TGATCTTGTGGTGAGTGCACCCTTGGCAAGAGCTGCTCCTTGGGATGAAT TGTCTCTTGTGCCAGAGTTTGAGTATCCAGGTGATGTACTGGTGTATCTT GGACACAAACACACTGGACTAGCACTCAACCAACCTCCAGATGGAGCACA CATTCAAGCGGCAAGAAACCTTACTTTCCTCGGCTCTTCTCTCGCTACGG CAGATATCAATGGAGATGGTCTCCAAGATCTTCTAATTGGATCACCATTC GCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89192:247..549+

>mRNA_M-pyrifera_M_contig89192.20673.1 ID=mRNA_M-pyrifera_M_contig89192.20673.1|Name=mRNA_M-pyrifera_M_contig89192.20673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig89192:247..549+ (Macrocystis pyrifera P11B4 male)
ATGGTGGTGATGGACTGGAATGGAGATGGGATTGATGATCTTGTGGTGAG
TGCACCCTTGGCAAGAGCTGCTCCTTGGGATGAATTGTCTCTTGTGCCAG
AGTTTGAGTATCCAGGTGATGTACTGGTGTATCTTGGACACAAACACACT
GGACTAGCACTCAACCAACCTCCAGATGGAGCACACATTCAAGCGGCAAG
AAACCTTACTTTCCTCGGCTCTTCTCTCGCTACGGCAGATATCAATGGAG
ATGGTCTCCAAGATCTTCTAATTGGATCACCATTCGCTATGGTGGTGATG
GACTGGAATGGAGATGGGATTGATGATCTTGTGGTGAGTGCACCCTTGGC
AAGAGCTGCTCCTTGGGATGAATTGTCTCTTGTGCCAGAGTTTGAGTATC
CAGGTGATGTACTGGTGTATCTTGGACACAAACACACTGGACTAGCACTC
AACCAACCTCCAGATGGAGCACACATTCAAGCGGCAAGAAACCTTACTTT
CCTCGGCTCTTCTCTCGCTACGGCAGATATCAATGGAGATGGTCTCCAAG
ATCTTCTAATTGGATCACCATTCGCT
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