mRNA_M-pyrifera_M_contig89188.20672.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89188.20672.1
Unique NamemRNA_M-pyrifera_M_contig89188.20672.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89188.20672.1 vs. uniprot
Match: A0A1X2GLF0_9FUNG (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GLF0_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-13
Identity = 49/171 (28.65%), Postives = 91/171 (53.22%), Query Frame = 1 
Query:    1 SVLKLYQFHPEAAKEDIVVIILGKALMATPETYFALALYLVSPDMQRKASVQILMDLERLLRRAQFGDFWKGVRDDEDAAVILEKLPGFEASVREAIFASMTRAAALVSRERLQEAVGVSDEEWDAFCKAHGVTPADGGGEGAGLLVMPAHSENRPRKHKFEEAVKFTDLT 513
            ++LKLYQF+P  AK+++VV IL K+L A P   F L LYL+S   +R   V  L  L++LL ++ +  FW  + +D     +  ++ GFE ++R+ I   +T +   +S   +Q+ + ++ + +  F +    +      +   ++V+P + +N  +     E +KF  LT
Sbjct:   49 AILKLYQFNPTKAKDNVVVSILAKSLTAIPSPDFNLCLYLLS---ERSTGVTQLTTLQQLLEQSNYAKFWT-LYNDSTYKQLTSQVAGFEDAIRQLIARVITMSHQSISASVVQKYLALTGDAFTKFIQEQQWS------QQGDVVVIPVNKDNEAKAIVVRENIKFEQLT 209
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BLAST of mRNA_M-pyrifera_M_contig89188.20672.1 vs. uniprot
Match: A0A6B2LHZ6_9EUKA (CSN8_PSD8_EIF3K domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LHZ6_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 1.950e-7
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 SVLKLYQFHPEAAKEDIVVIILGKALMATPETYFALALYLVSPDMQRKASVQILMDLERLLRRAQFGDFW 210
            +++KLYQF+PE A E+++ + L   L+   E  F+LALY+V   MQ   S+  L+ L   L  AQ+ +FW
Sbjct:   35 ALVKLYQFYPEKANENVLALTLALCLLHVEEQAFSLALYMVPEKMQSLGSISKLIALSECLESAQYAEFW 104
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BLAST of mRNA_M-pyrifera_M_contig89188.20672.1 vs. uniprot
Match: A0A0L0DPI7_THETB (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPI7_THETB)

HSP 1 Score: 57.8 bits (138), Expect = 6.150e-7
Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = 1 
Query:    1 SVLKLYQFHPE-------AAKEDIVVIILGKALMATPETYFALALYLVSPDMQRKASVQILMDLERLLRRAQFGDFWKGVRDDEDAAVILEKLPGFEASVREAIFASMTRAAALVSRERLQEAVGVSDEEWDAFC-KAHGVTPADGGGEGAGLLVMPAHSENRPRKHKFEEAVKFTDL 510
            +VLKLYQF+P+       A  E+I+ ++L KA+MA P   F LALYL+ P+       + L+DL  LL  A+F  FW        A  +L  + GF  ++R    + ++    L+    L + + +      A+  KA     +D        + +P +  N+ +  + +E ++F  +
Sbjct:   43 AVLKLYQFNPQLXXXXXXATNEEIISLVLAKAMMALPAPDFQLALYLI-PEAALTDMHRSLVDLANLLDTAKFRAFWDAF-GSSPAEDLLGSIAGFGDAIRGFAASVVSSTFQLIDLSELADLLFLDQAAAAAYAEKAGWAVDSDNA-----TVSIPLNEFNQAKAKEIKEDIRFEQI 213
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BLAST of mRNA_M-pyrifera_M_contig89188.20672.1 vs. uniprot
Match: A0A642UCM0_9ASCO (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642UCM0_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 2.000e-6
Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = 1 
Query:    1 SVLKLYQFHPEAAKEDIVVIILGKALMATPETYFALALYLV----------SPDMQRKASVQILMDLERLLRRAQFGDFWKGVRDDEDAAVILEKLPGFEASVREAIFASMTRAAALVSRERLQEAVGVSDEEWDAFCKAH-GVTPADGGGEGAGLLVMPAHSENRPRKHKFEEAVKFTDL 510
            ++LKLYQF+   AK+DIVVIIL KAL+    + F  AL+L+           PD       Q L+ L  LL   ++ +FW+  + D+    ++  + GF   +R +I  ++  AA  +  +  Q    +SD ++  + +++ G T  D   E      +P + +N  +     E VKF  L
Sbjct:   54 ALLKLYQFNNHLAKDDIVVIILSKALVRFYSSDFTTALHLLPGYVTTTVDPQPD-SLTDQCQKLLKLYELLDGCKYSEFWQLFKSDDSYEDMVADVNGFADDLRLSIAKTVEVAAKRIPVKVFQNWCNLSDAKFKEWVESNLGWTIKDDSVE------VPLNKDNDAKPVITSETVKFEQL 227
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BLAST of mRNA_M-pyrifera_M_contig89188.20672.1 vs. uniprot
Match: A0A7S2U1X9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U1X9_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 4.620e-6
Identity = 39/137 (28.47%), Postives = 65/137 (47.45%), Query Frame = 1 
Query:    7 LKLYQFHPEAAKEDIVVIILGKALMATPETYFALALYLVSPDMQRKASVQILMDLERLLRRAQFGDFWKGVRDDEDAAVILEKLPGFEASVREAIFASMTRAAALVSRERLQEAVGVSDEEWDAFCKAHGVTPADGG 417
            LKLY+FHP+ AK D+V  IL KALM  P + +   LYL++ +      V+ +  L  LL       FWK   + ++   +L+   GF  SV   +   +      +    L++ +    ++ +   K  G + A+GG
Sbjct:   57 LKLYKFHPQTAKPDVVGKILIKALMNLPTSDYISCLYLINSEHHTVQPVRTIRQLATLLESFDIEKFWKAAAEQKEFPKLLQT-KGFCESVENFVVTILQSTYCDIEVATLEKLLRNGSKDVERLQKEKGWSLANGG 192
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89188.20672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1X2GLF0_9FUNG1.300e-1328.65Eukaryotic translation initiation factor 3 subunit... [more]
A0A6B2LHZ6_9EUKA1.950e-740.00CSN8_PSD8_EIF3K domain-containing protein n=1 Tax=... [more]
A0A0L0DPI7_THETB6.150e-726.97Eukaryotic translation initiation factor 3 subunit... [more]
A0A642UCM0_9ASCO2.000e-628.73Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2U1X9_9EUKA4.620e-628.47Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89188contigM-pyrifera_M_contig89188:121..777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.4
Seed ortholog evalue7.7e-12
Seed eggNOG ortholog936053.I1BIM3
KEGG koko:K15028
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005852,GO:0032991,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGs1GTN2@112252,38GM1@33154,3NZ55@4751,KOG3252@1,KOG3252@2759
COG Functional cat.J
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons2
Model size549
Cds size549
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.9624527-CDS-M-pyrifera_M_contig89188:120..1921622816801.9624527-CDS-M-pyrifera_M_contig89188:120..192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89188 121..192 +
1692278187.1425762-CDS-M-pyrifera_M_contig89188:120..1921692278187.1425762-CDS-M-pyrifera_M_contig89188:120..192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89188 121..192 +
1622816801.974204-CDS-M-pyrifera_M_contig89188:300..7771622816801.974204-CDS-M-pyrifera_M_contig89188:300..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89188 301..777 +
1692278187.1560383-CDS-M-pyrifera_M_contig89188:300..7771692278187.1560383-CDS-M-pyrifera_M_contig89188:300..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89188 301..777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89188.20672.1prot_M-pyrifera_M_contig89188.20672.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89188 121..777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89188.20672.1

>prot_M-pyrifera_M_contig89188.20672.1 ID=prot_M-pyrifera_M_contig89188.20672.1|Name=mRNA_M-pyrifera_M_contig89188.20672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
SVLKLYQFHPEAAKEDIVVIILGKALMATPETYFALALYLVSPDMQRKAS
VQILMDLERLLRRAQFGDFWKGVRDDEDAAVILEKLPGFEASVREAIFAS
MTRAAALVSRERLQEAVGVSDEEWDAFCKAHGVTPADGGGEGAGLLVMPA
HSENRPRKHKFEEAVKFTDLTIALQGLITAKE*
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mRNA from alignment at M-pyrifera_M_contig89188:121..777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89188.20672.1 ID=mRNA_M-pyrifera_M_contig89188.20672.1|Name=mRNA_M-pyrifera_M_contig89188.20672.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig89188:121..777+ (Macrocystis pyrifera P11B4 male)
TCGGTTTTGAAGCTGTACCAGTTCCACCCAGAGGCCGCGAAGGAGGACAT
AGTGGTGATCATTCTGGGCAAGGTACGTGGTTGGGTTGTGTGGTGTTGTG
TGTGGTTGGGGTGTTTAGGGGGTGAGAGGGAGGGGTTTTGTGGTTTTACT
TGCAATGTTTGTTGTTTTTCGTGTTTTCAGGCGTTGATGGCGACTCCAGA
GACGTACTTTGCGCTCGCGTTGTACCTTGTGTCCCCAGACATGCAGCGCA
AGGCTTCCGTGCAGATTCTGATGGACCTGGAGCGATTGCTTCGTCGGGCG
CAATTTGGGGACTTTTGGAAAGGGGTGAGGGACGACGAGGATGCGGCGGT
GATTCTGGAGAAGCTGCCGGGGTTCGAGGCCAGTGTGAGGGAGGCCATTT
TCGCGTCGATGACGCGGGCAGCGGCTCTGGTGTCTCGAGAGAGGTTGCAG
GAGGCGGTTGGGGTGAGTGACGAGGAGTGGGACGCGTTTTGCAAAGCCCA
CGGAGTGACACCGGCAGACGGTGGCGGAGAAGGTGCTGGTCTCTTAGTCA
TGCCCGCCCACTCGGAAAACAGGCCCAGAAAACACAAGTTCGAAGAAGCC
GTCAAGTTCACCGACCTCACCATCGCACTCCAGGGCCTCATCACGGCCAA
AGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89188:121..777+

>mRNA_M-pyrifera_M_contig89188.20672.1 ID=mRNA_M-pyrifera_M_contig89188.20672.1|Name=mRNA_M-pyrifera_M_contig89188.20672.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig89188:121..777+ (Macrocystis pyrifera P11B4 male)
TCGGTTTTGAAGCTGTACCAGTTCCACCCAGAGGCCGCGAAGGAGGACAT
AGTGGTGATCATTCTGGGCAAGTCGGTTTTGAAGCTGTACCAGTTCCACC
CAGAGGCCGCGAAGGAGGACATAGTGGTGATCATTCTGGGCAAGGCGTTG
ATGGCGACTCCAGAGACGTACTTTGCGCTCGCGTTGTACCTTGTGTCCCC
AGACATGCAGCGCAAGGCTTCCGTGCAGATTCTGATGGACCTGGAGCGAT
TGCTTCGTCGGGCGCAATTTGGGGACTTTTGGAAAGGGGTGAGGGACGAC
GAGGATGCGGCGGTGATTCTGGAGAAGCTGCCGGGGTTCGAGGCCAGTGT
GAGGGAGGCCATTTTCGCGTCGATGACGCGGGCAGCGGCTCTGGTGTCTC
GAGAGAGGTTGCAGGAGGCGGTTGGGGTGAGTGACGAGGAGTGGGACGCG
TTTTGCAAAGCCCACGGAGTGACACCGGCAGACGGTGGCGGAGAAGGTGC
TGGTCTCTTAGTCATGCCCGCCCACTCGGAAAACAGGCCCAGAAAACACA
AGTTCGAAGAAGCCGTCAAGTTCACCGACCTCACCATCGCACTCCAGGGC
CTCATCACGGCCAAAGAATAGGCGTTGATGGCGACTCCAGAGACGTACTT
TGCGCTCGCGTTGTACCTTGTGTCCCCAGACATGCAGCGCAAGGCTTCCG
TGCAGATTCTGATGGACCTGGAGCGATTGCTTCGTCGGGCGCAATTTGGG
GACTTTTGGAAAGGGGTGAGGGACGACGAGGATGCGGCGGTGATTCTGGA
GAAGCTGCCGGGGTTCGAGGCCAGTGTGAGGGAGGCCATTTTCGCGTCGA
TGACGCGGGCAGCGGCTCTGGTGTCTCGAGAGAGGTTGCAGGAGGCGGTT
GGGGTGAGTGACGAGGAGTGGGACGCGTTTTGCAAAGCCCACGGAGTGAC
ACCGGCAGACGGTGGCGGAGAAGGTGCTGGTCTCTTAGTCATGCCCGCCC
ACTCGGAAAACAGGCCCAGAAAACACAAGTTCGAAGAAGCCGTCAAGTTC
ACCGACCTCACCATCGCACTCCAGGGCCTCATCACGGCCAAAGAATAG
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