mRNA_M-pyrifera_M_contig8914.20669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8914.20669.1
Unique NamemRNA_M-pyrifera_M_contig8914.20669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8914.20669.1 vs. uniprot
Match: D7FPX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.170e-31
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:  109 GVRWEEPTLEETFDAIDDVMMDRLPGEGRDKVKVFGAWLDADVAGRKAGQGNRAAGLVARAERGEELTRQEKAEVSY 339
            G+ + EP+LEE+ DAIDDV MDRLPGEGR+KVK+FGAWLDADVAGRKAGQGNRAAGL+AR + GEELT QEKAE+ Y
Sbjct:   55 GMEFTEPSLEESLDAIDDVFMDRLPGEGREKVKIFGAWLDADVAGRKAGQGNRAAGLIARMKNGEELTDQEKAEIFY 131
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BLAST of mRNA_M-pyrifera_M_contig8914.20669.1 vs. uniprot
Match: A0A835ZHV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.080e-17
Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   25 LPTSPSVWALKLSDDVV-DAAAEEAAAVVGVRWEEPTLEETFDAIDDVMMDRLPGEGRDKVKVFGAWLDADVAGRKAGQGNRAAGLVARAERGEELTRQEKAEVSY 339
            L  S S W   L+  V    A   +A    +     TLEE FD +DD++MDR   +GRD+VK++GAWLDAD+AGR  G  N+AA L A+A  GE LT +EK EV Y
Sbjct:   18 LQLSSSFWTPPLTPSVACTKAGVRSACEARLAASNKTLEEEFDELDDMVMDRPANKGRDQVKIWGAWLDADIAGRNVGSPNKAAALKAKAAAGEALTDREKGEVFY 123
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BLAST of mRNA_M-pyrifera_M_contig8914.20669.1 vs. uniprot
Match: A0A6V1UNI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UNI6_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 1.020e-7
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  133 LEETFDAIDDVMMDRLPGEGRDKVKVFGAWLDADVAGRKAGQGNRAAGLVARAERGEELTRQEKAEVSY 339
            LE+  D IDD+ M R   E RD+VKV+GAWLDAD+AGRKAG   +   + A+   GE L  +E+ E+ +
Sbjct:   82 LEKELDLIDDITMGRSEME-RDQVKVYGAWLDADIAGRKAGDNRK---IKAKLASGERLAPEERGEIFF 146
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BLAST of mRNA_M-pyrifera_M_contig8914.20669.1 vs. uniprot
Match: A0A7S2BT75_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BT75_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.260e-7
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  133 LEETFDAIDDVMMDRLPGEGRDKVKVFGAWLDADVAGRKAGQGNRAAGLV 282
            +EE  D IDD+ M+R    GRDKVK++G WLDAD+ GRKAG+ N+AA L 
Sbjct:   13 VEEEMDRIDDLSMNRPANIGRDKVKMWGVWLDADLVGRKAGK-NQAAFLT 61
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BLAST of mRNA_M-pyrifera_M_contig8914.20669.1 vs. uniprot
Match: A0A7S2V7T9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7T9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-5
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  145 FDAIDDVMMDRLPGEGRD-KVKVFGAWLDADVAGRKAGQGNRAAGLVARAERGEELTRQEKAEVSY 339
             D IDD+ M+R P +  D +V+V+GAWLD+D+AGRK     +   L ++  +GE+L   EKAE+ +
Sbjct:   86 LDVIDDLSMNRSPNDDGDGRVRVYGAWLDSDIAGRKVASKTKE--LRSKMNKGEQLEDAEKAEIFF 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8914.20669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPX2_ECTSI1.170e-3177.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHV4_9STRA3.080e-1747.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1UNI6_HETAK1.020e-747.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BT75_9STRA9.260e-758.00Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2V7T9_9STRA2.920e-542.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8914contigM-pyrifera_M_contig8914:9281..10196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.8481686-CDS-M-pyrifera_M_contig8914:9280..94321622816801.8481686-CDS-M-pyrifera_M_contig8914:9280..9432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 9281..9432 -
1692278187.0887244-CDS-M-pyrifera_M_contig8914:9280..94321692278187.0887244-CDS-M-pyrifera_M_contig8914:9280..9432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 9281..9432 -
1622816801.8592744-CDS-M-pyrifera_M_contig8914:10006..101961622816801.8592744-CDS-M-pyrifera_M_contig8914:10006..10196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 10007..10196 -
1692278187.1003256-CDS-M-pyrifera_M_contig8914:10006..101961692278187.1003256-CDS-M-pyrifera_M_contig8914:10006..10196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 10007..10196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8914.20669.1prot_M-pyrifera_M_contig8914.20669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8914 9281..10196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8914.20669.1

>prot_M-pyrifera_M_contig8914.20669.1 ID=prot_M-pyrifera_M_contig8914.20669.1|Name=mRNA_M-pyrifera_M_contig8914.20669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
AGHKHAISLPTSPSVWALKLSDDVVDAAAEEAAAVVGVRWEEPTLEETFD
AIDDVMMDRLPGEGRDKVKVFGAWLDADVAGRKAGQGNRAAGLVARAERG
EELTRQEKAEVSY*
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mRNA from alignment at M-pyrifera_M_contig8914:9281..10196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8914.20669.1 ID=mRNA_M-pyrifera_M_contig8914.20669.1|Name=mRNA_M-pyrifera_M_contig8914.20669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=916bp|location=Sequence derived from alignment at M-pyrifera_M_contig8914:9281..10196- (Macrocystis pyrifera P11B4 male)
GCTGGACATAAACATGCCATCAGCCTTCCCACAAGCCCAAGTGTCTGGGC
ACTGAAATTATCCGACGATGTTGTTGACGCGGCCGCGGAAGAAGCTGCTG
CCGTGGTCGGGGTGAGGTGGGAGGAGCCTACCCTGGAGGAGACATTCGAT
GCAATCGACGACGTGATGATGGACAGGTTGCCTGGAGAGGGTAAGTAAGT
ATTTCAGTGCGGATGGTCGTATATGCTCTGCTCGTCCGGGGTCGGCGGTT
TGGTTTGGTTGATCCGGCATGCTTGAGCCTTACACGTACACCCCGAGCTG
CAACTTCTTTGGCCCACGACTATGTTCCATCCGAGCCATGGTTGCCTGCC
GAGTGCCGCCTGCGCGTACCAGGCAATGTACGTACGTTGTACAGAGCAGA
TGCAACTACTGCTGCCTCGTTTGCGGATATCTTCCTTGCACCGCGTGGAT
GTCGCGCCATCCCGTACGCAGCCGTAGTTAATTTATGGAGATGCCACCTC
ACCATCACAACTTTGTGCATGCATGTGCTCAAGAAACCGACGGAACCAGA
CCGCGCTTCAGTAAGCGATACTTAGCAGAGGGTACTCGTAGCAGATGAGC
TGCAGAGCTATACTACCAGGTAAGTACCTGGTAGATGATGAGGCGCAAAC
CTAGAGATTCACAATATCATTCTTGTCGACCTAAGCCAGGCCTGGAGCCT
GTTGCCTGTATGTTCAACACCCTCAGCGAAACGAGTTTGCGTTGATCCCG
CTCCACGAAGGCAGGGCGAGACAAAGTCAAGGTGTTCGGAGCCTGGCTTG
ACGCAGACGTAGCCGGAAGAAAAGCGGGGCAAGGCAATCGAGCAGCAGGG
CTGGTCGCGCGTGCTGAACGGGGAGAGGAGCTGACGCGTCAGGAGAAAGC
TGAGGTATCGTACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8914:9281..10196-

>mRNA_M-pyrifera_M_contig8914.20669.1 ID=mRNA_M-pyrifera_M_contig8914.20669.1|Name=mRNA_M-pyrifera_M_contig8914.20669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig8914:9281..10196- (Macrocystis pyrifera P11B4 male)
GCTGGACATAAACATGCCATCAGCCTTCCCACAAGCCCAAGTGTCTGGGC
ACTGAAATTATCCGACGATGTTGTTGACGCGGCCGCGGAAGAAGCTGCTG
CCGTGGTCGGGGTGAGGTGGGAGGAGCCTACCCTGGAGGAGACATTCGAT
GCAATCGACGACGTGATGATGGACAGGTTGCCTGGAGAGGGCTGGACATA
AACATGCCATCAGCCTTCCCACAAGCCCAAGTGTCTGGGCACTGAAATTA
TCCGACGATGTTGTTGACGCGGCCGCGGAAGAAGCTGCTGCCGTGGTCGG
GGTGAGGTGGGAGGAGCCTACCCTGGAGGAGACATTCGATGCAATCGACG
ACGTGATGATGGACAGGTTGCCTGGAGAGGGGCGAGACAAAGTCAAGGTG
TTCGGAGCCTGGCTTGACGCAGACGTAGCCGGAAGAAAAGCGGGGCAAGG
CAATCGAGCAGCAGGGCTGGTCGCGCGTGCTGAACGGGGAGAGGAGCTGA
CGCGTCAGGAGAAAGCTGAGGTATCGTACTAAGGCGAGACAAAGTCAAGG
TGTTCGGAGCCTGGCTTGACGCAGACGTAGCCGGAAGAAAAGCGGGGCAA
GGCAATCGAGCAGCAGGGCTGGTCGCGCGTGCTGAACGGGGAGAGGAGCT
GACGCGTCAGGAGAAAGCTGAGGTATCGTACTAA
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