mRNA_M-pyrifera_M_contig8914.20667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8914.20667.1
Unique NamemRNA_M-pyrifera_M_contig8914.20667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.320e-52
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            MSGMAGSKRFM+PEVC GLPYNEKVDVYSFA+VLWEICTLRKPFAGMSVADHYREVI GGLRPPLDPRWP  L  LLQ+CWH DPDRRP
Sbjct:  234 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRP 322
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A6H5L2N4_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 9.050e-47
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            MSGMAGSKRFMAPEVC GL YNEKVDVYSFA+VLW+IC LRKPFAGMS ADHY +V+ GGLRPPLD RWPP+LV LLQ+CWH  PD RP
Sbjct:  193 MSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARP 281
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A6H5K4Q0_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.990e-34
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            M+G  GS+RFMAPEV  G+PYNEK D+YS+ +VLWE+C L+KPFAGMS  +H R+V   G+RPPLD RWP  L SLL+SCWH + + RP
Sbjct:  263 MTGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERP 351
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.870e-30
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            M+G  GS R+MAPEV   LPYNEKVDVY+F ++LWE+   R+ F GMSV D Y+ V+ GG+RPPLD  WPP L  L+  CWH D D+RP
Sbjct:  326 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLQYRRVFEGMSVGDFYQRVVNGGIRPPLDSSWPPALRKLIDLCWHADVDKRP 414
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A6V4M4K7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4M4K7_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 1.170e-26
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            M+G  GS R+MAPEV   LPYNEK DV+SFA++L+++ +  KPF+GM +   Y +VI GG RP +  +WP  +  LL+ CWH DPD RP
Sbjct:   55 MTGKTGSARYMAPEVALSLPYNEKADVHSFAMILYQLLSHEKPFSGMDLEMLYTDVIYGGQRPKVPRQWPASMRDLLRDCWHPDPDCRP 143
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A7S1ZVA0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.570e-26
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            MSG  GS R+MAPEV   LPYN+K DVYSF ++LWE+   +KP+ GM+  + Y  V+ G  RPP++ +WP  LV L+Q CW  D   RP
Sbjct:  104 MSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRP 192
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: D7FS28_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS28_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.310e-26
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            M+G  GS R+MAPEV   LPYNEKVDVY+F ++LWE+   R+ F GM V D Y  V+  G RP LD  WP  L  L+  CWH D DRRP
Sbjct:  179 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRP 267
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A6H5L2R6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.860e-26
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            M+G  GS R+MAPEV   LPYNEKVDVY+F ++LWE+   R+ F GM V D Y  V+  G RP LD  WP  L  L+  CWH D DRRP
Sbjct:  392 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRP 480
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BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A7S3XMV1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMV1_HETAK)

HSP 1 Score: 102 bits (254), Expect = 1.790e-25
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMS-VADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            ++G  GS R+MAPEV   LPYN  VDVY +A++ WE+  LR+PF  +  V D +++V+ GGLRPPLDP WP     L  +CW  DP RRP
Sbjct:   77 LTGETGSLRYMAPEVAQQLPYNGAVDVYGWALLTWELMALRRPFHELKGVKDFFKQVVRGGLRPPLDPAWPEDFRELAAACWSPDPGRRP 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Match: A0A835Z8Z5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.340e-25
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVADHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP 267
            M+G  G+ R+M PEV  G  YNEKVDVYSF ++LWE+   R+ F+G+SV + Y +V+VGG RP  DP W P LV+L++ CW  D ++RP
Sbjct:  196 MTGNTGTVRYMPPEVARGQCYNEKVDVYSFGLMLWEMLQYRRVFSGISVREFYADVLVGGRRPTPDPSWSPELVALMKGCWSVDCNKRP 284
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8914.20667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMU8_9PHAE2.320e-5288.76Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5L2N4_9PHAE9.050e-4780.90Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K4Q0_9PHAE1.990e-3461.80Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZE86_9STRA3.870e-3058.43Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6V4M4K7_9EUKA1.170e-2651.69Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S1ZVA0_9STRA1.570e-2650.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D7FS28_ECTSI2.310e-2655.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L2R6_9PHAE6.860e-2655.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S3XMV1_HETAK1.790e-2551.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z8Z5_9STRA3.340e-2551.69Kinase-like domain-containing protein n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8914contigM-pyrifera_M_contig8914:3846..4112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue9.1e-43
Seed eggNOG ortholog2880.D7FPX1
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.7367296-CDS-M-pyrifera_M_contig8914:3845..41121622816801.7367296-CDS-M-pyrifera_M_contig8914:3845..4112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 3846..4112 +
1692278186.9958303-CDS-M-pyrifera_M_contig8914:3845..41121692278186.9958303-CDS-M-pyrifera_M_contig8914:3845..4112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8914 3846..4112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8914.20667.1prot_M-pyrifera_M_contig8914.20667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8914 3846..4112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8914.20667.1

>prot_M-pyrifera_M_contig8914.20667.1 ID=prot_M-pyrifera_M_contig8914.20667.1|Name=mRNA_M-pyrifera_M_contig8914.20667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MSGMAGSKRFMAPEVCHGLPYNEKVDVYSFAVVLWEICTLRKPFAGMSVA
DHYREVIVGGLRPPLDPRWPPRLVSLLQSCWHGDPDRRP
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mRNA from alignment at M-pyrifera_M_contig8914:3846..4112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8914.20667.1 ID=mRNA_M-pyrifera_M_contig8914.20667.1|Name=mRNA_M-pyrifera_M_contig8914.20667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig8914:3846..4112+ (Macrocystis pyrifera P11B4 male)
ATGTCGGGCATGGCGGGCAGCAAGCGCTTCATGGCGCCGGAGGTCTGTCA
CGGCCTTCCGTACAACGAGAAGGTGGATGTCTACTCCTTCGCGGTGGTTC
TATGGGAGATCTGCACGCTCCGCAAGCCCTTTGCGGGGATGAGTGTGGCT
GACCACTACCGAGAAGTTATTGTTGGAGGCCTGAGGCCGCCCTTGGACCC
GCGGTGGCCGCCGCGTCTTGTAAGCCTCCTGCAGTCGTGCTGGCATGGGG
ATCCGGATCGCAGGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8914:3846..4112+

>mRNA_M-pyrifera_M_contig8914.20667.1 ID=mRNA_M-pyrifera_M_contig8914.20667.1|Name=mRNA_M-pyrifera_M_contig8914.20667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig8914:3846..4112+ (Macrocystis pyrifera P11B4 male)
ATGTCGGGCATGGCGGGCAGCAAGCGCTTCATGGCGCCGGAGGTCTGTCA
CGGCCTTCCGTACAACGAGAAGGTGGATGTCTACTCCTTCGCGGTGGTTC
TATGGGAGATCTGCACGCTCCGCAAGCCCTTTGCGGGGATGAGTGTGGCT
GACCACTACCGAGAAGTTATTGTTGGAGGCCTGAGGCCGCCCTTGGACCC
GCGGTGGCCGCCGCGTCTTGTAAGCCTCCTGCAGTCGTGCTGGCATGGGG
ATCCGGATCGCAGGCCTATGTCGGGCATGGCGGGCAGCAAGCGCTTCATG
GCGCCGGAGGTCTGTCACGGCCTTCCGTACAACGAGAAGGTGGATGTCTA
CTCCTTCGCGGTGGTTCTATGGGAGATCTGCACGCTCCGCAAGCCCTTTG
CGGGGATGAGTGTGGCTGACCACTACCGAGAAGTTATTGTTGGAGGCCTG
AGGCCGCCCTTGGACCCGCGGTGGCCGCCGCGTCTTGTAAGCCTCCTGCA
GTCGTGCTGGCATGGGGATCCGGATCGCAGGCCT
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