mRNA_M-pyrifera_M_contig89129.20664.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89129.20664.1
Unique NamemRNA_M-pyrifera_M_contig89129.20664.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A5A8DC75_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DC75_CAFRO)

HSP 1 Score: 55.1 bits (131), Expect = 6.870e-7
Identity = 29/85 (34.12%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALT----GTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRIQ 243
            H   +RS+ FSP   L+LSAS DGTC +        G     + +V   +      R+L+A+WHP+APL AT+S    + +  ++
Sbjct:  770 HSAAVRSVAFSPRGGLLLSASFDGTCRVLHSFPRPGGEGAGVLDEVAPAVAGGDGQRMLSARWHPWAPLLATTSTTGVLNVLHVR 854
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A6A4WKT3_AMPAM (WD repeat-containing protein 47 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WKT3_AMPAM)

HSP 1 Score: 51.6 bits (122), Expect = 3.630e-6
Identity = 24/80 (30.00%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 240
            H G++RS+ FSP    +L+A  D    ++ L G     +  V   +   HQD+++  +WHPY   F ++  D +  LW +
Sbjct:   77 HDGDVRSVRFSPHAFYLLTAGYDNRLVLSDLQGDLTMPLPSV---VVAQHQDKVITGRWHPYEFSFLSTGADKTCTLWAL 153
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A6G3Z348_9CYAN (WD40 repeat domain-containing protein n=1 Tax=Leptolyngbya sp. SIO1D8 TaxID=2607807 RepID=A0A6G3Z348_9CYAN)

HSP 1 Score: 52.4 bits (124), Expect = 5.800e-6
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   13 IRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRIQ 243
            + SL FSP  R +LS   DGT AI  +    L  VG+   +  H+H   +L   + P   L+A++S+D +VKLWR+Q
Sbjct:  306 VTSLLFSPDGRYVLSGDSDGTLAIWDVEDMDL--VGRSDGQ--HSHARGILDITYDPVNGLYASASIDGTVKLWRLQ 378
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: UPI001C90FB30 (WD repeat-containing protein 47-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C90FB30)

HSP 1 Score: 51.6 bits (122), Expect = 1.100e-5
Identity = 24/80 (30.00%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 240
            H G++RS+ FSP    +L+A  D    ++ L G     +  V   +   HQD+++  +WHPY   F ++  D +  LW +
Sbjct:  360 HDGDVRSVRFSPHAFYLLTAGYDNRLVLSDLQGDLTMPLPSV---VVAQHQDKVITGRWHPYEFSFLSTGADKTCTLWAL 436
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A1D2NMU8_ORCCI (WD repeat-containing protein 47 (Fragment) n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NMU8_ORCCI)

HSP 1 Score: 51.6 bits (122), Expect = 1.120e-5
Identity = 24/80 (30.00%), Postives = 40/80 (50.00%), Query Frame = 1 
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 240
            H G++RS+ FSP+    LS   D    +T L G   + +  V       H D++++ +WHP    F ++S D +  LW +
Sbjct:  485 HDGDVRSVRFSPNAFYCLSTGYDHRIMLTDLQGDLTQTINSVTVA---THDDKVISGRWHPKDFTFLSTSADKTASLWAL 561
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: UPI000B902878 (WD repeat-containing protein 47 isoform X2 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B902878)

HSP 1 Score: 48.9 bits (115), Expect = 9.940e-5
Identity = 24/80 (30.00%), Postives = 39/80 (48.75%), Query Frame = 1 
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 240
            H G++RS+ FSP    +LS   D    +T L G     +  V      +H D+++  +WHP    F ++S D +  LW +
Sbjct:  422 HNGDVRSVRFSPHAYYLLSGGYDHRLMLTDLQGDLSLNLTSVPVA---SHDDKVICGRWHPTDFSFLSTSADKTATLWAL 498
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BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: UPI001604FDB0 (WD repeat-containing protein 47 isoform X1 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604FDB0)

HSP 1 Score: 48.9 bits (115), Expect = 9.960e-5
Identity = 24/80 (30.00%), Postives = 39/80 (48.75%), Query Frame = 1 
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 240
            H G++RS+ FSP    +LS   D    +T L G     +  V      +H D+++  +WHP    F ++S D +  LW +
Sbjct:  435 HNGDVRSVRFSPHAYYLLSGGYDHRLMLTDLQGDLSLNLTSVPVA---SHDDKVICGRWHPTDFSFLSTSADKTATLWAL 511
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8DC75_CAFRO6.870e-734.12Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6A4WKT3_AMPAM3.630e-630.00WD repeat-containing protein 47 n=2 Tax=Amphibalan... [more]
A0A6G3Z348_9CYAN5.800e-638.96WD40 repeat domain-containing protein n=1 Tax=Lept... [more]
UPI001C90FB301.100e-530.00WD repeat-containing protein 47-like n=1 Tax=Amphi... [more]
A0A1D2NMU8_ORCCI1.120e-530.00WD repeat-containing protein 47 (Fragment) n=1 Tax... [more]
UPI000B9028789.940e-530.00WD repeat-containing protein 47 isoform X2 n=1 Tax... [more]
UPI001604FDB09.960e-530.00WD repeat-containing protein 47 isoform X1 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89129contigM-pyrifera_M_contig89129:266..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog4787.PITG_13054T0
Preferred nameWDR47
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3QCX6@4776,KOG0641@1,KOG0641@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.6214714-CDS-M-pyrifera_M_contig89129:265..5141622816801.6214714-CDS-M-pyrifera_M_contig89129:265..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89129 266..514 +
1692278186.9304461-CDS-M-pyrifera_M_contig89129:265..5141692278186.9304461-CDS-M-pyrifera_M_contig89129:265..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89129 266..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89129.20664.1prot_M-pyrifera_M_contig89129.20664.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89129 266..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89129.20664.1

>prot_M-pyrifera_M_contig89129.20664.1 ID=prot_M-pyrifera_M_contig89129.20664.1|Name=mRNA_M-pyrifera_M_contig89129.20664.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAH
QDRLLAAKWHPYAPLFATSSVDASVKLWRIQV*
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mRNA from alignment at M-pyrifera_M_contig89129:266..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89129.20664.1 ID=mRNA_M-pyrifera_M_contig89129.20664.1|Name=mRNA_M-pyrifera_M_contig89129.20664.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig89129:266..514+ (Macrocystis pyrifera P11B4 male)
CACCAAGGCAACATTCGCTCCCTCCACTTCTCCCCGTCCAAACGACTCAT
CCTCTCCGCCTCCATGGATGGCACATGTGCCATCACCGCCCTCACAGGAA
CCTCGTTGCGAAGAGTGGGACAAGTGCATGCCGAACTCCCACATGCGCAC
CAAGACAGACTCCTCGCGGCAAAGTGGCACCCATACGCCCCGCTCTTCGC
CACATCCTCCGTCGACGCCTCCGTCAAACTCTGGAGAATCCAAGTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89129:266..514+

>mRNA_M-pyrifera_M_contig89129.20664.1 ID=mRNA_M-pyrifera_M_contig89129.20664.1|Name=mRNA_M-pyrifera_M_contig89129.20664.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig89129:266..514+ (Macrocystis pyrifera P11B4 male)
CACCAAGGCAACATTCGCTCCCTCCACTTCTCCCCGTCCAAACGACTCAT
CCTCTCCGCCTCCATGGATGGCACATGTGCCATCACCGCCCTCACAGGAA
CCTCGTTGCGAAGAGTGGGACAAGTGCATGCCGAACTCCCACATGCGCAC
CAAGACAGACTCCTCGCGGCAAAGTGGCACCCATACGCCCCGCTCTTCGC
CACATCCTCCGTCGACGCCTCCGTCAAACTCTGGAGAATCCAAGTGTAAC
ACCAAGGCAACATTCGCTCCCTCCACTTCTCCCCGTCCAAACGACTCATC
CTCTCCGCCTCCATGGATGGCACATGTGCCATCACCGCCCTCACAGGAAC
CTCGTTGCGAAGAGTGGGACAAGTGCATGCCGAACTCCCACATGCGCACC
AAGACAGACTCCTCGCGGCAAAGTGGCACCCATACGCCCCGCTCTTCGCC
ACATCCTCCGTCGACGCCTCCGTCAAACTCTGGAGAATCCAAGTGTAA
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