mRNA_M-pyrifera_M_contig8912.20662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8912.20662.1
Unique NamemRNA_M-pyrifera_M_contig8912.20662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8912.20662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8912contigM-pyrifera_M_contig8912:8585..9474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size890
Cds size696
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.521026-CDS-M-pyrifera_M_contig8912:8584..92801622816801.521026-CDS-M-pyrifera_M_contig8912:8584..9280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8912 8585..9280 +
1692278186.8638577-CDS-M-pyrifera_M_contig8912:8584..92801692278186.8638577-CDS-M-pyrifera_M_contig8912:8584..9280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8912 8585..9280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.5350027-UTR-M-pyrifera_M_contig8912:9280..94741622816801.5350027-UTR-M-pyrifera_M_contig8912:9280..9474Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8912 9281..9474 +
1692278186.8823278-UTR-M-pyrifera_M_contig8912:9280..94741692278186.8823278-UTR-M-pyrifera_M_contig8912:9280..9474Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8912 9281..9474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8912.20662.1prot_M-pyrifera_M_contig8912.20662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8912 8585..9280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8912.20662.1

>prot_M-pyrifera_M_contig8912.20662.1 ID=prot_M-pyrifera_M_contig8912.20662.1|Name=mRNA_M-pyrifera_M_contig8912.20662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
SEAAGAGHLDILQWARDHGCGWNFRTCESAARGGHLDLFQWARARGCPWD
SRTCAAAIRNGHLPVLKWVVLHGCPWPRCPKALAAEGGHLHILEWIPPSS
PYHVGEDGDSICAAAALGGHLRVLQWGRAKGWGLWHDTCTNAAIGGHLGI
LQWARANGCRWDMTHIPIWPGTATSRCSNGQDVTAAPGMIQKSVILQPVE
VTWKCSNGPEVTAAPGIKAYARWQPVTIIWR*
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mRNA from alignment at M-pyrifera_M_contig8912:8585..9474+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8912.20662.1 ID=mRNA_M-pyrifera_M_contig8912.20662.1|Name=mRNA_M-pyrifera_M_contig8912.20662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=890bp|location=Sequence derived from alignment at M-pyrifera_M_contig8912:8585..9474+ (Macrocystis pyrifera P11B4 male)
AGCGAGGCCGCCGGTGCAGGGCATTTGGATATCCTGCAGTGGGCACGGGA
TCACGGTTGCGGTTGGAACTTTCGAACGTGCGAGAGTGCTGCACGGGGGG
GTCACCTGGATCTGTTTCAGTGGGCCAGGGCCAGAGGTTGTCCTTGGGAT
AGCCGGACATGCGCGGCCGCTATTAGAAATGGGCACCTGCCTGTCTTAAA
GTGGGTGGTGCTGCACGGTTGCCCTTGGCCAAGGTGTCCGAAGGCCTTGG
CAGCTGAAGGCGGGCACCTACACATTCTCGAGTGGATTCCTCCTTCCAGC
CCTTACCATGTGGGAGAAGACGGCGATAGTATATGCGCGGCTGCTGCTCT
TGGAGGGCATCTACGAGTGCTACAGTGGGGACGTGCTAAAGGGTGGGGCC
TTTGGCATGATACATGTACGAATGCTGCCATAGGTGGGCACTTGGGCATT
CTTCAGTGGGCGCGAGCTAACGGGTGTAGGTGGGATATGACACATATACC
GATATGGCCCGGAACGGCCACTTCGAGGTGCTCCAATGGGCAAGATGTAA
CGGCTGCCCCTGGGATGATACAAAAATCTGTGATTTTGCAGCCTGTAGAG
GTCACTTGGAAATGCTCAAATGGGCCCGAAGTAACGGCTGCCCCTGGGAT
AAAAGCATATGCACGGTGGCAGCCGGTAACGATCATTTGGAGATGATTAA
GTGGGCACGGTGTAACGGCTGCCCCTGGGACGAACGCACATGCACCGTGG
CCGCAAAGAGAGGTCATTTCAAGTTGCTGAAGTGGGCTCGGTGTAACGGC
TGTCCCTGGAACCAGGATACATGCGCCGCTGCGGCCAGGGCAGATCGCTT
GGACATACTGCAGTGGCTACGAGCGCAAGGCTGCCCATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8912:8585..9474+

>mRNA_M-pyrifera_M_contig8912.20662.1 ID=mRNA_M-pyrifera_M_contig8912.20662.1|Name=mRNA_M-pyrifera_M_contig8912.20662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig8912:8585..9474+ (Macrocystis pyrifera P11B4 male)
AGCGAGGCCGCCGGTGCAGGGCATTTGGATATCCTGCAGTGGGCACGGGA
TCACGGTTGCGGTTGGAACTTTCGAACGTGCGAGAGTGCTGCACGGGGGG
GTCACCTGGATCTGTTTCAGTGGGCCAGGGCCAGAGGTTGTCCTTGGGAT
AGCCGGACATGCGCGGCCGCTATTAGAAATGGGCACCTGCCTGTCTTAAA
GTGGGTGGTGCTGCACGGTTGCCCTTGGCCAAGGTGTCCGAAGGCCTTGG
CAGCTGAAGGCGGGCACCTACACATTCTCGAGTGGATTCCTCCTTCCAGC
CCTTACCATGTGGGAGAAGACGGCGATAGTATATGCGCGGCTGCTGCTCT
TGGAGGGCATCTACGAGTGCTACAGTGGGGACGTGCTAAAGGGTGGGGCC
TTTGGCATGATACATGTACGAATGCTGCCATAGGTGGGCACTTGGGCATT
CTTCAGTGGGCGCGAGCTAACGGGTGTAGGTGGGATATGACACATATACC
GATATGGCCCGGAACGGCCACTTCGAGGTGCTCCAATGGGCAAGATGTAA
CGGCTGCCCCTGGGATGATACAAAAATCTGTGATTTTGCAGCCTGTAGAG
GTCACTTGGAAATGCTCAAATGGGCCCGAAGTAACGGCTGCCCCTGGGAT
AAAAGCATATGCACGGTGGCAGCCGGTAACGATCATTTGGAGATGAAGCG
AGGCCGCCGGTGCAGGGCATTTGGATATCCTGCAGTGGGCACGGGATCAC
GGTTGCGGTTGGAACTTTCGAACGTGCGAGAGTGCTGCACGGGGGGGTCA
CCTGGATCTGTTTCAGTGGGCCAGGGCCAGAGGTTGTCCTTGGGATAGCC
GGACATGCGCGGCCGCTATTAGAAATGGGCACCTGCCTGTCTTAAAGTGG
GTGGTGCTGCACGGTTGCCCTTGGCCAAGGTGTCCGAAGGCCTTGGCAGC
TGAAGGCGGGCACCTACACATTCTCGAGTGGATTCCTCCTTCCAGCCCTT
ACCATGTGGGAGAAGACGGCGATAGTATATGCGCGGCTGCTGCTCTTGGA
GGGCATCTACGAGTGCTACAGTGGGGACGTGCTAAAGGGTGGGGCCTTTG
GCATGATACATGTACGAATGCTGCCATAGGTGGGCACTTGGGCATTCTTC
AGTGGGCGCGAGCTAACGGGTGTAGGTGGGATATGACACATATACCGATA
TGGCCCGGAACGGCCACTTCGAGGTGCTCCAATGGGCAAGATGTAACGGC
TGCCCCTGGGATGATACAAAAATCTGTGATTTTGCAGCCTGTAGAGGTCA
CTTGGAAATGCTCAAATGGGCCCGAAGTAACGGCTGCCCCTGGGATAAAA
GCATATGCACGGTGGCAGCCGGTAACGATCATTTGGAGATGA
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