mRNA_M-pyrifera_M_contig89067.20652.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89067.20652.1
Unique NamemRNA_M-pyrifera_M_contig89067.20652.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: H2MKY8_ORYLA (Armadillo repeat containing 6 n=5 Tax=Oryzias TaxID=8089 RepID=H2MKY8_ORYLA)

HSP 1 Score: 84.7 bits (208), Expect = 4.170e-15
Identity = 67/251 (26.69%), Postives = 119/251 (47.41%), Query Frame = 1
Query:   10 RFRKEAGVVKRGFALVRGVVGNDDKSATVSKAFDYGRELGENRRVIGLLWRVVGEHGESGDMCVASFQLLKSLAVNDKACVLMDRLKVLQTIATPLLLRHQHNAVVVRAGLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENARLLVNHLSAPPLLAQAMRLHPRHGPLQRAACLAARNLISRDKSLWTALREEDIHTLAKTASEAHPKLCKDVAYALRRDAG 762
            R  + A +VK   A +R +  +DD   T   A D+ + +      + +L      + ++  +       L  LAV ++ C  +  L  L+ + T LL  +  +A + R  L  +R +A +D ++  +        ++L+V  +++HAR+P VCE  C  +S + LR P+N  +++    A   L QAM+ H     +Q+ AC+  RNL++  ++    + +    TL   A + HP  C DV  A  RD G
Sbjct:  206 RHTRRAELVKEASAALRVMTFDDDVRVTFGHAHDHAKMIVLEHNGLKVLIEAAKAYHDNPPLLSELCAALSRLAVRNEFCQDICDLGGLKLMMT-LLADNYESADLSRQVLSAMRAIAGNDDVKDAVVA---AGGVQLIVIVMNKHARNPAVCEQGCACLSVLALRKPKNCTVIMEDGGALAAL-QAMKDHQLALNVQKQACMLLRNLVAHMQNYCQPILDMGAETLIGKAVQKHPD-CADVGKAALRDLG 450          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: A0A6J1SXG8_FRAOC (armadillo repeat-containing protein 6 homolog n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SXG8_FRAOC)

HSP 1 Score: 80.9 bits (198), Expect = 8.520e-14
Identity = 65/243 (26.75%), Postives = 118/243 (48.56%), Query Frame = 1
Query:   52 LVRGVVGNDDKSATVSKAFDYGRELGENRRVIGLLWRVVGEHGESGDMCVASFQLLKSLAVNDKACVLMDR----LKVLQTIATPLLLRHQHNAVVVRAGLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENARLLVNHLSAPPLLAQAMRLHPRHGPLQRAACLAARNLISRDKSLWTALREEDIHTLAKTASEAHPKLCKDVAYALRRDAGLT 768
            +++ +  +DD    +S+A ++ R +      +  L  ++G+H    D+       L ++ V ++ C  +D     + +L  +A+     H     V    L+ ++ LA +D ++  L     GA   L+++ + RH     +  A C  I+ + LR PENA++LV++  A   L  A+++H ++G +QR ACLA RNL+SR+K L        +  L  +  ++    C D A A  RD G T
Sbjct:  212 VIKALTLDDDIREQISRAHEHARLMAVKN--LCTLCELLGKHKNDTDIVPHILGALSAIVVRNEFCEKVDEAGGIIHILDILAS-----HPDIERVNSQCLRMIKVLAGNDDVKSHLM--HSGAS-PLLLAAMSRHKGSSLISSAGCSCIAALALRSPENAQILVDN-GAADALVDALKIH-KNGNIQRVACLAIRNLVSRNKQLCKIFISLGVEDLLNSVDKS---ACWDEAKAALRDLGCT 439          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: A0A5B7D4G5_PORTR (Armadillo repeat-containing protein 6 n=2 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7D4G5_PORTR)

HSP 1 Score: 60.5 bits (145), Expect = 4.390e-7
Identity = 45/179 (25.14%), Postives = 83/179 (46.37%), Query Frame = 1
Query:    1 LLRRFRKEAGVVKRGFALVRGVVGNDDKSATVSKAFDYGRELGENRRVIGLLWRVVGEHGESGDMCVASFQLLKSLAVNDKACV-LMDRLKVLQTIATPLLLRHQHNAVVVRAGLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENARLLV 534
            +L+  R  + VV+     +R    +DD      KA ++ R L E   +I +   ++ E     D        +  L V  + C   +DR  +L  +   +L+      ++ +  L  L+ L  +DR+++     + G   +L+V+ + +H  +  VCE ACG +S + LR+P NA+ LV
Sbjct:   26 VLQTHRTNSRVVRVVCKALRVFTLDDDVRQAFGKAHEHARFLAEEHNLIAVCLELIKEWLNDADTTSELLSTVAKLCVRAEYCQEALDRGALL--VINDVLISFPDRPILNKQALSLLKALVGNDRVKEA--AMKSGVS-QLIVAAMSKHQMECTVCEEACGAVSMLALRVPANAKQLV 199          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: A0A7I0ZM42_DANPL (armadillo repeat-containing protein 6 homolog isoform X1 n=4 Tax=Danaus TaxID=13036 RepID=A0A7I0ZM42_DANPL)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-6
Identity = 60/236 (25.42%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   52 LVRGVVGNDDKSATVSKAFDYGRELGEN--RRVIGLLWRVVGEHGESGDMCVASFQLLKSLAVNDKACVLMDRLKVLQTIATPLLLRHQHNAVVVRAGLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENARLLVNHLSAPPLLAQAMRLHPRHGPLQRAACLAARNLISRDKSLWTALREEDIHTLA-KTASEAHPKLCKDVAYALR 750
            ++R    +DD      KA ++ R+LG      + GLL +       S  M   S     +L V  + C   D    L ++    L  +  N VV++   + +  LA +D +++ +    +G  + +VVS L RHA +          I+ + LR P +A+  +        +   +++HP    +Q+ AC A RNL+SR +   +   E DI  L  +T ++ + +   DV  ALR
Sbjct:  219 VIRKFTLDDDIRVEFGKAHEHARDLGVLLLETLAGLLKKHTTPPLVSELMWTTS-----TLLVRHELCSRADLRAELMSV----LCDNYDNVVVIQQACKLITALAGNDDVKRDIV---NGGIVPVVVSLLGRHASNAPASALILKCIAALSLREPNHAKQFLQS-GVIKAIVDCIKIHPNSSQVQKNACWAIRNLVSRCREYNSQFHELDIEALLNQTYNKFNKEFGFDVKSALR 441          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: A0A7S4WJ89_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WJ89_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.710e-6
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 1
Query:  334 AGLQFLRTLANSDRLRQTLC--TTEDGAP---------IRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENA-RLLVNHL---SAPPLLAQAMRLHPRHGPLQRAACLAARNLISR 642
            + L  LR L  +D ++ TLC   TE  +          +  ++  + ++  +P V E  CGT + + LR P+NA R+L ++         +   M+  P H PLQR ACLA RN++SR
Sbjct:  468 SSLGLLRNLCGNDEIKTTLCLGNTESSSSSSSFLSSSIVPSIIHAMKKYKNNPIVQEHGCGTFAAMALRKPKNALRILQDNDRDGGGANAICTCMKRFPNHVPLQRQACLAIRNIVSR 585          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: A0A3G2LIX1_PENVA (Armadillo repeat containing protein 6 n=4 Tax=Penaeus TaxID=133894 RepID=A0A3G2LIX1_PENVA)

HSP 1 Score: 58.5 bits (140), Expect = 3.100e-6
Identity = 44/163 (26.99%), Postives = 77/163 (47.24%), Query Frame = 1
Query:   55 VRGVVGNDDKSATVSKAFDYGRELGENRRVIGLLWRVVGEHGESGDMCVASFQLLKSLAVNDKAC---VLMDRLKVLQTIATPLLLRHQHNAVVVRAGLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENARLLV 534
            +R    +DD      KA ++ R L E   +I +   ++       D        +  L V  + C   V    L V+  +    L+    +A + +  + FL+TL  +D+++     T  G+P +L+++ L +H   P VCEAACG IS + LR+P +A+ L+
Sbjct:  221 IRAFTLDDDMRQEYGKAHEHARLLVEEHGLIPVCLEMIKNCLNESDTASELLSTVSKLCVRAEYCQEAVDHGALVVINDV----LVSFPDHAALNKQAITFLKTLVGNDKVKAEAMKT--GSP-QLIIAALAKHQSVPGVCEAACGAISFLALRVPAHAKQLM 376          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: J9K414_ACYPI (Uncharacterized protein n=10 Tax=Aphidinae TaxID=133076 RepID=J9K414_ACYPI)

HSP 1 Score: 57.4 bits (137), Expect = 7.390e-6
Identity = 39/143 (27.27%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  337 GLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHARDPDVCEAACGTISNVCLRLPENARLLVNHLSAPPLLAQAMRLHPRHGPLQRAACLAARNLISRDKSLWTALREEDIHTLAKTASEAHPKLCKDVAYALRRDAGL 765
              + L++LA  D ++  +          L++S L RH  +  +C  A   ++ + LR P+N+  L   L    L+ QAM++H      Q+ AC A RN++SR++ L +     +I ++ +     + K C+  A +  RD GL
Sbjct:  301 AFKLLKSLAGDDIVKDDI---RKVGFCPLILSALQRHINNKQLCIDAMKLLTALTLRSPQNSAELTQ-LGIAELIVQAMKVHSNDDKHQKHACTAVRNIVSRNRELASEFLAHNIESIIEKIISQY-KNCEFEAKSALRDLGL 438          
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Match: A0A2C9K3K4_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K3K4_BIOGL)

HSP 1 Score: 57.0 bits (136), Expect = 1.000e-5
Identity = 36/106 (33.96%), Postives = 51/106 (48.11%), Query Frame = 1
Query:  445 HARDPDVCEAACGTISNVCLRLPENARLLVNHLSAPPLLAQAMRLHPRHGPLQRAACLAARNLISRDKSLWTALREEDIHTLAKTASEAHPKLCKDVAYALRRDAG 762
            HA+   + EA C  ++ + LR  EN + +V        + QAMRLHP    +Q+ AC+A RNL+SR K     +       L   A   H +  +D A A  RD G
Sbjct:  345 HAKSASIAEAVCKVLTAITLRNAENCQKVVE-CEGHQHIVQAMRLHPGDVGVQKNACMALRNLVSRSKEFTDQILSLGTERLLNEAMTRH-EAAQDEAKAALRDLG 448          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89067.20652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
H2MKY8_ORYLA4.170e-1526.69Armadillo repeat containing 6 n=5 Tax=Oryzias TaxI... [more]
A0A6J1SXG8_FRAOC8.520e-1426.75armadillo repeat-containing protein 6 homolog n=1 ... [more]
A0A5B7D4G5_PORTR4.390e-725.14Armadillo repeat-containing protein 6 n=2 Tax=Port... [more]
A0A7I0ZM42_DANPL1.700e-625.42armadillo repeat-containing protein 6 homolog isof... [more]
A0A7S4WJ89_9STRA2.710e-632.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A3G2LIX1_PENVA3.100e-626.99Armadillo repeat containing protein 6 n=4 Tax=Pena... [more]
J9K414_ACYPI7.390e-627.27Uncharacterized protein n=10 Tax=Aphidinae TaxID=1... [more]
A0A2C9K3K4_BIOGL1.000e-533.96Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89067contigM-pyrifera_M_contig89067:38..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score99.0
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog6412.HelroP87912
Preferred nameARMC6
Hectar predicted targeting categorymitochondrion
GOsGO:0002244,GO:0002376,GO:0002520,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009987,GO:0030097,GO:0030154,GO:0032501,GO:0032502,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869
EggNOG free text desc.Armadillo repeat-containing protein 6
EggNOG OGs39241@33154,3BD3P@33208,3CRIE@33213,KOG4199@1,KOG4199@2759
COG Functional cat.U
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size771
Cds size771
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.775237-CDS-M-pyrifera_M_contig89067:37..8081622816800.775237-CDS-M-pyrifera_M_contig89067:37..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89067 38..808 -
1692278186.3466773-CDS-M-pyrifera_M_contig89067:37..8081692278186.3466773-CDS-M-pyrifera_M_contig89067:37..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89067 38..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89067.20652.1prot_M-pyrifera_M_contig89067.20652.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89067 38..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89067.20652.1

>prot_M-pyrifera_M_contig89067.20652.1 ID=prot_M-pyrifera_M_contig89067.20652.1|Name=mRNA_M-pyrifera_M_contig89067.20652.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
LLRRFRKEAGVVKRGFALVRGVVGNDDKSATVSKAFDYGRELGENRRVIG
LLWRVVGEHGESGDMCVASFQLLKSLAVNDKACVLMDRLKVLQTIATPLL
LRHQHNAVVVRAGLQFLRTLANSDRLRQTLCTTEDGAPIRLVVSCLDRHA
RDPDVCEAACGTISNVCLRLPENARLLVNHLSAPPLLAQAMRLHPRHGPL
QRAACLAARNLISRDKSLWTALREEDIHTLAKTASEAHPKLCKDVAYALR
RDAGLT*
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mRNA from alignment at M-pyrifera_M_contig89067:38..808-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89067.20652.1 ID=mRNA_M-pyrifera_M_contig89067.20652.1|Name=mRNA_M-pyrifera_M_contig89067.20652.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig89067:38..808- (Macrocystis pyrifera P11B4 male)
TTGCTGCGTCGGTTTCGGAAAGAGGCTGGGGTGGTGAAGAGGGGGTTTGC GTTGGTGCGAGGAGTGGTGGGGAATGACGACAAGAGCGCGACTGTGTCCA AGGCGTTTGACTACGGGAGGGAGTTGGGCGAGAATCGAAGGGTGATTGGG TTGCTGTGGCGCGTGGTGGGAGAGCATGGGGAGAGTGGAGACATGTGTGT AGCTTCGTTCCAGCTGCTCAAGAGTCTGGCAGTGAACGACAAGGCGTGTG TGTTGATGGACCGATTGAAAGTGCTCCAAACCATTGCCACGCCTCTTCTC CTCCGCCACCAGCACAATGCAGTGGTGGTGAGGGCAGGGTTGCAATTCTT GCGCACCCTTGCCAACAGTGACAGGCTTCGCCAAACGCTCTGTACCACAG AAGATGGAGCTCCCATTCGCCTCGTCGTCTCTTGTCTTGATCGGCACGCC AGAGACCCAGACGTGTGTGAGGCAGCATGTGGCACCATATCCAACGTATG CCTCCGCCTTCCAGAAAACGCACGCTTGCTCGTCAACCACCTCTCCGCCC CTCCCCTGCTCGCCCAAGCCATGCGGCTTCACCCTCGGCACGGGCCCCTC CAGAGAGCCGCCTGCCTCGCTGCCAGAAACCTCATCTCCAGGGACAAGAG CCTCTGGACCGCGCTCCGAGAAGAAGACATCCACACGCTCGCGAAAACAG CCAGCGAAGCCCACCCGAAACTGTGCAAGGACGTCGCATATGCGCTGCGG AGGGACGCAGGACTCACCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89067:38..808-

>mRNA_M-pyrifera_M_contig89067.20652.1 ID=mRNA_M-pyrifera_M_contig89067.20652.1|Name=mRNA_M-pyrifera_M_contig89067.20652.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig89067:38..808- (Macrocystis pyrifera P11B4 male)
TTGCTGCGTCGGTTTCGGAAAGAGGCTGGGGTGGTGAAGAGGGGGTTTGC
GTTGGTGCGAGGAGTGGTGGGGAATGACGACAAGAGCGCGACTGTGTCCA
AGGCGTTTGACTACGGGAGGGAGTTGGGCGAGAATCGAAGGGTGATTGGG
TTGCTGTGGCGCGTGGTGGGAGAGCATGGGGAGAGTGGAGACATGTGTGT
AGCTTCGTTCCAGCTGCTCAAGAGTCTGGCAGTGAACGACAAGGCGTGTG
TGTTGATGGACCGATTGAAAGTGCTCCAAACCATTGCCACGCCTCTTCTC
CTCCGCCACCAGCACAATGCAGTGGTGGTGAGGGCAGGGTTGCAATTCTT
GCGCACCCTTGCCAACAGTGACAGGCTTCGCCAAACGCTCTGTACCACAG
AAGATGGAGCTCCCATTCGCCTCGTCGTCTCTTGTCTTGATCGGCACGCC
AGAGACCCAGACGTGTGTGAGGCAGCATGTGGCACCATATCCAACGTATG
CCTCCGCCTTCCAGAAAACGCACGCTTGCTCGTCAACCACCTCTCCGCCC
CTCCCCTGCTCGCCCAAGCCATGCGGCTTCACCCTCGGCACGGGCCCCTC
CAGAGAGCCGCCTGCCTCGCTGCCAGAAACCTCATCTCCAGGGACAAGAG
CCTCTGGACCGCGCTCCGAGAAGAAGACATCCACACGCTCGCGAAAACAG
CCAGCGAAGCCCACCCGAAACTGTGCAAGGACGTCGCATATGCGCTGCGG
AGGGACGCAGGACTCACCTAGTTGCTGCGTCGGTTTCGGAAAGAGGCTGG
GGTGGTGAAGAGGGGGTTTGCGTTGGTGCGAGGAGTGGTGGGGAATGACG
ACAAGAGCGCGACTGTGTCCAAGGCGTTTGACTACGGGAGGGAGTTGGGC
GAGAATCGAAGGGTGATTGGGTTGCTGTGGCGCGTGGTGGGAGAGCATGG
GGAGAGTGGAGACATGTGTGTAGCTTCGTTCCAGCTGCTCAAGAGTCTGG
CAGTGAACGACAAGGCGTGTGTGTTGATGGACCGATTGAAAGTGCTCCAA
ACCATTGCCACGCCTCTTCTCCTCCGCCACCAGCACAATGCAGTGGTGGT
GAGGGCAGGGTTGCAATTCTTGCGCACCCTTGCCAACAGTGACAGGCTTC
GCCAAACGCTCTGTACCACAGAAGATGGAGCTCCCATTCGCCTCGTCGTC
TCTTGTCTTGATCGGCACGCCAGAGACCCAGACGTGTGTGAGGCAGCATG
TGGCACCATATCCAACGTATGCCTCCGCCTTCCAGAAAACGCACGCTTGC
TCGTCAACCACCTCTCCGCCCCTCCCCTGCTCGCCCAAGCCATGCGGCTT
CACCCTCGGCACGGGCCCCTCCAGAGAGCCGCCTGCCTCGCTGCCAGAAA
CCTCATCTCCAGGGACAAGAGCCTCTGGACCGCGCTCCGAGAAGAAGACA
TCCACACGCTCGCGAAAACAGCCAGCGAAGCCCACCCGAAACTGTGCAAG
GACGTCGCATATGCGCTGCGGAGGGACGCAGGACTCACCTAG
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