mRNA_M-pyrifera_M_contig89058.20648.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89058.20648.1
Unique NamemRNA_M-pyrifera_M_contig89058.20648.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: UPI001E1E03D2 (coenzyme Q-binding protein COQ10 homolog, mitochondrial-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E03D2)

HSP 1 Score: 131 bits (329), Expect = 2.060e-35
Identity = 66/144 (45.83%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    4 RSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAV 435
            R H ETR +PF   ELY+VVADV SYS F+PWC  S+V  R  +  ++ A+LG+GF+ ++E+YTS V L  +R++ A+  +  LF+YL N+W F P  +D ++T +   V+F FR+PLY  +T+ FF+EVV  M +A+ +RA V
Sbjct:   50 RKHLETRTLPFAPHELYSVVADVDSYSEFVPWCTSSNVVKRIGQ-DHLVAELGVGFQVLSEKYTSLVTLDPHRSIKADVPNSTLFNYLINDWTFKPG-HDKSTTELTFYVEFQFRNPLYQRVTDLFFNEVVKNMVNAFERRAVV 191          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: M1V6C8_CYAM1 (Polyketide_cyc domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6C8_CYAM1)

HSP 1 Score: 130 bits (328), Expect = 3.010e-34
Identity = 72/154 (46.75%), Postives = 97/154 (62.99%), Query Frame = 1
Query:    4 RSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVIKQQQEARRR 465
            RS  E++ VPF+A ELY+VVADV+ Y  F+PWC  S V  R  ER  +EA+L +GF+   E+Y S V L  +RAV A +T   LF +L NEW F P  N PN + V   VDF FRSP+Y +  + FF+EV  +M  A+ +RA V+ ++   RRR
Sbjct:  134 RSFSESKLVPFSAHELYSVVADVERYHEFVPWCTSSRVIQRYGER-LLEAELKVGFQLFHEKYISLVRLEPDRAVRATATTSQLFEHLVNEWRFRPGKN-PNESWVDFYVDFRFRSPVYQAAVDLFFNEVARKMVRAFEERARVVHRKFSERRR 285          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: A0A1D2A1N7_AUXPR (Polyketide_cyc domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1N7_AUXPR)

HSP 1 Score: 127 bits (320), Expect = 8.840e-34
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   16 ETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVI 438
            E + +P+T +E+Y VVA V+ Y  F+PWCV S +T R     Y+EA+L +GF+   ERY S V LH  +A+ +   D  LF YL NEW F P P+ P ST +  +VDFAF+S LY  L N FF EVV RM  A   R  ++
Sbjct:   67 EQKVLPYTPEEIYDVVAAVEHYHEFVPWCVRSVITAR-RPPNYLEAELEVGFQMFTERYISRVTLHPGQAISSSVGDSTLFRYLNNEWRFAPGPH-PGSTRLDFSVDFAFKSALYRHLANVFFAEVVQRMMGALEGRCTLL 205          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: A0A7J7INZ2_9RHOD (Coenzyme Q-binding protein coq10, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INZ2_9RHOD)

HSP 1 Score: 127 bits (319), Expect = 3.140e-33
Identity = 70/145 (48.28%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    4 RSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVI 438
            RS  E++ VPFT  ELY+VVADV+ Y  F+PWC  S V  R  ER  +EA+L +GF+   E Y S V L   RAV A +T   LF YL NEW F P  N P  + V   VDF FRSPLY +  + FF+EV  +M  A+ +RA V+
Sbjct:  103 RSFEESKLVPFTTHELYSVVADVERYQEFVPWCTGSRVVRRFGER-LLEAELKVGFQLFHEEYISLVRLEPGRAVRATATTSRLFEYLVNEWRFRPAEN-PKESWVYFYVDFRFRSPLYRTAVDLFFNEVAKKMVRAFEERAQVV 245          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: S4R8B1_PETMA (Polyketide_cyc domain-containing protein n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4R8B1_PETMA)

HSP 1 Score: 125 bits (314), Expect = 4.500e-33
Identity = 62/145 (42.76%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 RRSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHF-LPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAA 432
            R+ + E   V ++ +++YA+VA+V+SY  F+PWC  S VT+R    G+M ADL +GF  + E Y+S+V L E   V A  TDG LF++L  EW F    P  P S T++ ++ F FRS L++ + + FFDEVV +M +A+++RAA
Sbjct:   47 RKDYAERHLVGYSKEQMYAIVANVESYREFVPWCKRSRVTFR--RPGFMRADLQVGFPPLVESYSSTVTLVEPHIVRATCTDGRLFNHLETEWRFGRGAPGHPESCTIEFSISFEFRSLLHSQMASMFFDEVVKQMVTAFLRRAA 189          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: A0A1D2A2U6_AUXPR (Polyketide_cyc domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A2U6_AUXPR)

HSP 1 Score: 124 bits (311), Expect = 1.080e-32
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    1 RRSHCETRAVP-------FTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVI 438
            R  H  T+ +P       +T +E+Y VVA V+ Y  F+PWCV S +T R     Y+EA+L +GF+   ERY S V LH  +A+ +   D  LF YL NEW F P P+ P ST +  +VDFAF+S LY  L N FF EVV RM  A   R  ++
Sbjct:   32 RALHSRTQVLPPAPAPPRYTPEEIYDVVAAVEHYHEFVPWCVRSVITAR-RPPNYLEAELEVGFQMFTERYISRVTLHPGQAISSSVGDSTLFRYLNNEWRFAPGPH-PGSTRLDFSVDFAFKSALYRHLANVFFAEVVQRMMGALEGRCTLL 182          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: A0A1D1ZQC3_AUXPR (Polyketide_cyc domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZQC3_AUXPR)

HSP 1 Score: 122 bits (306), Expect = 1.810e-32
Identity = 63/135 (46.67%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   34 FTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVI 438
            +T +E+Y VVA V+ Y  F+PWCV S +T R     Y+EA+L +GF+   ERY S V LH  +A+ +   D  LF YL NEW F P P+ P ST +  +VDFAF+S LY  L N FF EVV RM  A   R  ++
Sbjct:    6 YTPEEIYDVVAAVEHYHEFVPWCVRSVITAR-RPPNYLEAELEVGFQMFTERYISRVTLHPGQAISSSVGDSTLFRYLNNEWRFAPGPH-PGSTRLDFSVDFAFKSALYRHLANVFFAEVVQRMMGALEGRCTLL 138          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: H8FRT0_MAGML (Polyketide_cyc domain-containing protein n=3 Tax=Magnetospirillum TaxID=13134 RepID=H8FRT0_MAGML)

HSP 1 Score: 119 bits (297), Expect = 3.190e-31
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    7 SHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRA 429
            +H E R +P+  ++LYA+VADV+ Y  FLPWCV S +  RD +  +  ADL IGF+ V ER+TS V L  NR V    T+G  FHYL N W F P P+   +T +   VDF FRS L  +L  A F+E V  M SA+ +RA
Sbjct:    3 THAEKRILPYAPEKLYAMVADVERYPDFLPWCVASRIRRRDGDVFF--ADLVIGFKMVRERFTSKVTLDPNRRVDVTYTEG-PFHYLNNHWVFNPMPD--GTTEIDFYVDFEFRSKLLQTLIGALFNEAVRLMVSAFERRA 138          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: A0A3B5QQX9_XIPMA (Polyketide_cyc domain-containing protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QQX9_XIPMA)

HSP 1 Score: 120 bits (302), Expect = 7.930e-31
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 RRSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLP-TPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVI 438
            R+ + E R + ++  E+Y VVA+V++Y  F+PWC +SDV +R    G+ +A L +GF  V E YTS V       V A  +DG LF++L   W F P  P  P + TV  A+ F FRS L++ L N FFDEVV +M SA+ +RA+ I
Sbjct:   88 RKEYSERRIIGYSMQEIYDVVAEVENYRHFVPWCKKSDVVFR--RSGFCKAKLSVGFPPVVENYTSLVTTVRPHLVKASCSDGKLFNHLETVWRFSPGLPGYPRTCTVDFAISFEFRSLLHSQLANVFFDEVVKQMVSAFERRASTI 232          
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Match: A0A3B5R2L2_XIPMA (Polyketide_cyc domain-containing protein n=10 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3B5R2L2_XIPMA)

HSP 1 Score: 120 bits (302), Expect = 1.230e-30
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 RRSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYMEADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLP-TPNDPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVI 438
            R+ + E R + ++  E+Y VVA+V++Y  F+PWC +SDV +R    G+ +A L +GF  V E YTS V       V A  +DG LF++L   W F P  P  P + TV  A+ F FRS L++ L N FFDEVV +M SA+ +RA+ I
Sbjct:  107 RKEYSERRIIGYSMQEIYDVVAEVENYRHFVPWCKKSDVVFR--RSGFCKAKLSVGFPPVVENYTSLVTTVRPHLVKASCSDGKLFNHLETVWRFSPGLPGYPRTCTVDFAISFEFRSLLHSQLANVFFDEVVKQMVSAFERRASTI 251          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89058.20648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1E03D22.060e-3545.83coenzyme Q-binding protein COQ10 homolog, mitochon... [more]
M1V6C8_CYAM13.010e-3446.75Polyketide_cyc domain-containing protein n=1 Tax=C... [more]
A0A1D2A1N7_AUXPR8.840e-3446.10Polyketide_cyc domain-containing protein n=2 Tax=A... [more]
A0A7J7INZ2_9RHOD3.140e-3348.28Coenzyme Q-binding protein coq10, mitochondrial n=... [more]
S4R8B1_PETMA4.500e-3342.76Polyketide_cyc domain-containing protein n=2 Tax=P... [more]
A0A1D2A2U6_AUXPR1.080e-3243.79Polyketide_cyc domain-containing protein n=1 Tax=A... [more]
A0A1D1ZQC3_AUXPR1.810e-3246.67Polyketide_cyc domain-containing protein n=1 Tax=A... [more]
H8FRT0_MAGML3.190e-3146.81Polyketide_cyc domain-containing protein n=3 Tax=M... [more]
A0A3B5QQX9_XIPMA7.930e-3142.86Polyketide_cyc domain-containing protein n=1 Tax=X... [more]
A0A3B5R2L2_XIPMA1.230e-3042.86Polyketide_cyc domain-containing protein n=10 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89058contigM-pyrifera_M_contig89058:240..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog45157.CMQ192CT
Preferred namecoq10
KEGG koko:K18588
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0015980,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.ubiquinone binding
EggNOG OGsCOG2867@1,KOG3177@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.275982-CDS-M-pyrifera_M_contig89058:239..7281622816800.275982-CDS-M-pyrifera_M_contig89058:239..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89058 240..728 -
1692278186.281863-CDS-M-pyrifera_M_contig89058:239..7281692278186.281863-CDS-M-pyrifera_M_contig89058:239..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89058 240..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89058.20648.1prot_M-pyrifera_M_contig89058.20648.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89058 240..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89058.20648.1

>prot_M-pyrifera_M_contig89058.20648.1 ID=prot_M-pyrifera_M_contig89058.20648.1|Name=mRNA_M-pyrifera_M_contig89058.20648.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
RRSHCETRAVPFTADELYAVVADVQSYSSFLPWCVESDVTYRDEERGYME
ADLGIGFRFVAERYTSSVWLHENRAVFAESTDGHLFHYLRNEWHFLPTPN
DPNSTTVKLAVDFAFRSPLYASLTNAFFDEVVHRMASAYIKRAAVIKQQQ
EARRRSYGGKEEE
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mRNA from alignment at M-pyrifera_M_contig89058:240..728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89058.20648.1 ID=mRNA_M-pyrifera_M_contig89058.20648.1|Name=mRNA_M-pyrifera_M_contig89058.20648.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig89058:240..728- (Macrocystis pyrifera P11B4 male)
AGGAGAAGCCACTGTGAGACGAGGGCAGTGCCGTTTACAGCAGATGAATT GTATGCAGTTGTTGCAGATGTACAATCCTACTCGTCGTTCTTACCATGGT GTGTTGAATCAGATGTGACGTATCGAGATGAAGAGAGAGGGTATATGGAG GCAGATTTAGGAATTGGCTTCCGGTTTGTCGCCGAACGGTACACCAGCAG TGTTTGGTTGCATGAGAATCGGGCTGTGTTTGCTGAGAGTACAGATGGTC ATCTATTCCACTACCTACGCAACGAATGGCACTTTCTCCCCACTCCAAAT GACCCAAATTCCACCACTGTCAAGCTTGCTGTCGATTTCGCTTTCCGATC TCCGCTCTATGCCTCTCTCACCAACGCATTCTTTGATGAAGTCGTGCACC GCATGGCGTCGGCATACATCAAGCGTGCTGCAGTGATAAAACAGCAACAA GAAGCGAGAAGAAGGAGTTATGGGGGTAAGGAGGAGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89058:240..728-

>mRNA_M-pyrifera_M_contig89058.20648.1 ID=mRNA_M-pyrifera_M_contig89058.20648.1|Name=mRNA_M-pyrifera_M_contig89058.20648.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig89058:240..728- (Macrocystis pyrifera P11B4 male)
AGGAGAAGCCACTGTGAGACGAGGGCAGTGCCGTTTACAGCAGATGAATT
GTATGCAGTTGTTGCAGATGTACAATCCTACTCGTCGTTCTTACCATGGT
GTGTTGAATCAGATGTGACGTATCGAGATGAAGAGAGAGGGTATATGGAG
GCAGATTTAGGAATTGGCTTCCGGTTTGTCGCCGAACGGTACACCAGCAG
TGTTTGGTTGCATGAGAATCGGGCTGTGTTTGCTGAGAGTACAGATGGTC
ATCTATTCCACTACCTACGCAACGAATGGCACTTTCTCCCCACTCCAAAT
GACCCAAATTCCACCACTGTCAAGCTTGCTGTCGATTTCGCTTTCCGATC
TCCGCTCTATGCCTCTCTCACCAACGCATTCTTTGATGAAGTCGTGCACC
GCATGGCGTCGGCATACATCAAGCGTGCTGCAGTGATAAAACAGCAACAA
GAAGCGAGAAGAAGGAGTTATGGGGGTAAGGAGGAGGAAAGGAGAAGCCA
CTGTGAGACGAGGGCAGTGCCGTTTACAGCAGATGAATTGTATGCAGTTG
TTGCAGATGTACAATCCTACTCGTCGTTCTTACCATGGTGTGTTGAATCA
GATGTGACGTATCGAGATGAAGAGAGAGGGTATATGGAGGCAGATTTAGG
AATTGGCTTCCGGTTTGTCGCCGAACGGTACACCAGCAGTGTTTGGTTGC
ATGAGAATCGGGCTGTGTTTGCTGAGAGTACAGATGGTCATCTATTCCAC
TACCTACGCAACGAATGGCACTTTCTCCCCACTCCAAATGACCCAAATTC
CACCACTGTCAAGCTTGCTGTCGATTTCGCTTTCCGATCTCCGCTCTATG
CCTCTCTCACCAACGCATTCTTTGATGAAGTCGTGCACCGCATGGCGTCG
GCATACATCAAGCGTGCTGCAGTGATAAAACAGCAACAAGAAGCGAGAAG
AAGGAGTTATGGGGGTAAGGAGGAGGAA
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