mRNA_M-pyrifera_M_contig89057.20647.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89057.20647.1
Unique NamemRNA_M-pyrifera_M_contig89057.20647.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig89057.20647.1 vs. uniprot
Match: A0A2E0PWI6_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0PWI6_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 5.990e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 FNRAQVAVALGFNGHLDDLPYLEAMSDGDNHYVAQSAITGLSLFGGKRARNILIKLADKYRGTSRGDLMTEMLRHAYRWPP 243
            FNRAQV +AL  NG+ +D+ YLE M+D +NHY+ Q+AITGL +   ++A+N L  L  K+R  SRG L+ E+L +AY+  P
Sbjct:  158 FNRAQVIIALALNGNSNDVEYLEKMADSENHYIIQTAITGLGIMSSEKAKNALGILWKKHRENSRGKLIEEVLDYAYKVEP 238
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89057.20647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E0PWI6_9GAMM5.990e-1749.38Uncharacterized protein n=1 Tax=Legionellales bact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89057contigM-pyrifera_M_contig89057:553..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.2456803-CDS-M-pyrifera_M_contig89057:552..8101622816800.2456803-CDS-M-pyrifera_M_contig89057:552..810Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89057 553..810 -
1692278186.2705524-CDS-M-pyrifera_M_contig89057:552..8101692278186.2705524-CDS-M-pyrifera_M_contig89057:552..810Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89057 553..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89057.20647.1prot_M-pyrifera_M_contig89057.20647.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89057 553..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89057.20647.1

>prot_M-pyrifera_M_contig89057.20647.1 ID=prot_M-pyrifera_M_contig89057.20647.1|Name=mRNA_M-pyrifera_M_contig89057.20647.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
FNRAQVAVALGFNGHLDDLPYLEAMSDGDNHYVAQSAITGLSLFGGKRAR
NILIKLADKYRGTSRGDLMTEMLRHAYRWPPPKAAP
back to top

mRNA from alignment at M-pyrifera_M_contig89057:553..810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89057.20647.1 ID=mRNA_M-pyrifera_M_contig89057.20647.1|Name=mRNA_M-pyrifera_M_contig89057.20647.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig89057:553..810- (Macrocystis pyrifera P11B4 male)
TTCAATCGCGCCCAGGTAGCCGTGGCGCTCGGTTTCAACGGGCATCTCGA
TGATTTGCCCTACCTCGAGGCGATGAGCGATGGCGACAATCACTACGTGG
CGCAAAGTGCGATCACGGGTTTGTCTTTATTCGGTGGCAAACGGGCGCGG
AATATTCTGATCAAACTCGCGGATAAATACCGTGGTACGTCGCGCGGGGA
TTTGATGACGGAGATGTTGCGCCACGCCTACCGCTGGCCGCCGCCGAAAG
CGGCGCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89057:553..810-

>mRNA_M-pyrifera_M_contig89057.20647.1 ID=mRNA_M-pyrifera_M_contig89057.20647.1|Name=mRNA_M-pyrifera_M_contig89057.20647.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig89057:553..810- (Macrocystis pyrifera P11B4 male)
TTCAATCGCGCCCAGGTAGCCGTGGCGCTCGGTTTCAACGGGCATCTCGA
TGATTTGCCCTACCTCGAGGCGATGAGCGATGGCGACAATCACTACGTGG
CGCAAAGTGCGATCACGGGTTTGTCTTTATTCGGTGGCAAACGGGCGCGG
AATATTCTGATCAAACTCGCGGATAAATACCGTGGTACGTCGCGCGGGGA
TTTGATGACGGAGATGTTGCGCCACGCCTACCGCTGGCCGCCGCCGAAAG
CGGCGCCCTTCAATCGCGCCCAGGTAGCCGTGGCGCTCGGTTTCAACGGG
CATCTCGATGATTTGCCCTACCTCGAGGCGATGAGCGATGGCGACAATCA
CTACGTGGCGCAAAGTGCGATCACGGGTTTGTCTTTATTCGGTGGCAAAC
GGGCGCGGAATATTCTGATCAAACTCGCGGATAAATACCGTGGTACGTCG
CGCGGGGATTTGATGACGGAGATGTTGCGCCACGCCTACCGCTGGCCGCC
GCCGAAAGCGGCGCCC
back to top