mRNA_M-pyrifera_M_contig89048.20643.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89048.20643.1
Unique NamemRNA_M-pyrifera_M_contig89048.20643.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: R4XJA1_TAPDE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XJA1_TAPDE)

HSP 1 Score: 222 bits (566), Expect = 2.040e-65
Identity = 111/246 (45.12%), Postives = 166/246 (67.48%), Query Frame = 1
Query:    4 FHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALA---------------HGREGCMQI-----VTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLLE 681
            F T+  VY+K++ + E+DE+ GD++S ++D E  ++ +L+  IL+H ++ L+CSE +A+LDCLLA+A AAK++KW  P +T++N +++ EGRHP+ EL +DVFVPN   +                H  E    I     +TG N SGKS+Y+KQ+ALI ++A +GSFVPA SA++G  D I TRL +  + T  ESSF+ DL+Q+ + L+  TA+SL++IDEFGKGT+A DG ALF A V +L +
Sbjct:  243 FSTEKSVYFKSEHMAELDEYFGDVHSLVVDREIELLYQLQLRILEHSQLLLNCSEIIAELDCLLAYALAAKKYKWVRPQMTDQNVLSVQEGRHPLYELVVDVFVPNDVHVIGRDVGEEPVNNRLSEHENENVDDIPNLILMTGANFSGKSVYLKQMALIVYMAHIGSFVPAKSALVGITDRILTRLMTRRSVTQAESSFMCDLQQVSVALQLMTARSLLVIDEFGKGTEACDGAALFGALVEHLTD 488          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A397V3M1_9GLOM (Muts domain V-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397V3M1_9GLOM)

HSP 1 Score: 225 bits (574), Expect = 6.870e-65
Identity = 114/247 (46.15%), Postives = 168/247 (68.02%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGRE--------------------GCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLLE 681
            QF T   VYYKNDR+ E+DE++GD++  I+D E  IV++L+  IL++  ++L+ S   A+LDC+L+FA++A+R+ +  PI+T+EN + I +GRHP+QELC++VFV N T L  GR                       + +++G N SGKS+Y+KQVALI ++A +GSFVPA SA IG  D IFTR+ + ET +  +S+F+ DL+Q+ I LRN+T+KSL+I DEFGKGT + DG  LF   + +LL+
Sbjct:  532 QFSTATTVYYKNDRMRELDEYLGDIHGLIVDREIEIVQKLQDRILEYVPLFLNSSAVCAELDCILSFAESARRYGYNRPIVTDENILIIEKGRHPLQELCINVFVANDTKLIGGRGILNDDDEMHEDNLTGERDTYNSVMLLSGANYSGKSVYLKQVALIVYMAHIGSFVPAESATIGLTDKIFTRIQTKETVSKIQSAFMIDLQQISIALRNSTSKSLLIFDEFGKGTGSTDGAGLFCGVMEHLLK 778          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A1B6CQJ5_9HEMI (DNA_MISMATCH_REPAIR_2 domain-containing protein n=3 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CQJ5_9HEMI)

HSP 1 Score: 221 bits (563), Expect = 5.270e-64
Identity = 107/227 (47.14%), Postives = 161/227 (70.93%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGREGCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLLE 681
            +FH + + Y+K+ R  E+D++ GDL   ++++E  I+ +L  +I ++ E  +     +A+LDCLLAF+  A+ + + CP L +   I I++GRHP+QELC   FVPN T +++  +G ++++TGPN+SGKSIY+KQVALI +LA +GSFVPA SA IG +D + +R+ S E+ T + SSF+ D+RQM + L N++  SL+IIDEFGKGTD  DG+ L AACV +LLE
Sbjct:  411 KFHANKVAYFKSARCYELDKNPGDLKVDMMEMESKIILQLIQYIQQNMEYLVKLINLLAELDCLLAFSFVARDYNFVCPELVDGRIIEIIKGRHPLQELCTMSFVPNDT-VSNDEQGVVKLLTGPNASGKSIYLKQVALIAYLAHIGSFVPAESAKIGLLDHLHSRIQSVESMTLHLSSFMGDIRQMTMSLHNSSPTSLIIIDEFGKGTDECDGIGLLAACVQHLLE 636          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A139AXG1_GONPJ (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AXG1_GONPJ)

HSP 1 Score: 219 bits (557), Expect = 1.560e-63
Identity = 106/231 (45.89%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGREGCMQ----IVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLLE 681
            QF TD +VYYKNDR+ ++D+ +GDL++ I D E   +++L    ++  +  L   + + +LDCLLA ADAA+++++  P+LTE+N I IV GRHPIQELC+++FV N T +     G       I++G N SGKS+Y+KQVALI F++ VGSFVPA  A+IG  D I TRL + ++ +  +S+F++DL+ + + L+N+T +SL+IIDEFGKGT   DGV +F   +  LL+
Sbjct:  427 QFETDAIVYYKNDRMRQLDQELGDLHAMIADREIEWIQQLTDRAIEGADSILGAYDVIGELDCLLALADAARKYRYKRPMLTEDNVIKIVNGRHPIQELCVEIFVANGTQIGPEEPGSKTSQVFILSGANYSGKSVYLKQVALIVFMSHVGSFVPAEYALIGLTDRILTRLQTKDSVSKMQSTFMSDLQHVSLALKNSTERSLIIIDEFGKGTATTDGVGMFCGVIEALLD 657          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A4S2MQV0_9PEZI (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MQV0_9PEZI)

HSP 1 Score: 219 bits (559), Expect = 1.850e-63
Identity = 109/240 (45.42%), Postives = 160/240 (66.67%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGREGCMQI--------------VTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLL 678
            QF T    YYKN ++ E+DE+ GD+Y  I D E  IV EL+  +L+ +++ ++C+   A+LDCL+A A AA+++K+T PI+TE+N I I +GRHP+QELC+  ++ N T L  G      +              +TGPN SGKS+Y+KQ+ALI +LA +GSFVPA SA+IG  D I TR+ + E+ +  +S+FL DL+Q+  +LR AT +SLV++DEFGKGT+ ++G  L AA +  LL
Sbjct:  479 QFFTGACWYYKNPQMRELDEYFGDMYGNICDREIEIVHELQVRVLESEKLLMECAHLTAELDCLVALARAAEKYKYTRPIMTEDNVIKITKGRHPLQELCVPAYIENDTLLVGGSFSPCSLNDEPLDHIPPSTILLTGPNHSGKSVYLKQIALIVYLAHIGSFVPAESAIIGITDKILTRIQTQESVSKLQSAFLIDLQQVVDVLRQATERSLVVLDEFGKGTEESNGAGLCAAVLEELL 718          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A507DXQ9_9FUNG (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DXQ9_9FUNG)

HSP 1 Score: 221 bits (562), Expect = 2.140e-63
Identity = 105/223 (47.09%), Postives = 162/223 (72.65%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGRE-GCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACV 666
            QF T   VYYK+DR+ E+DE++GD++S I+D E  ++++L+  IL+++   +  +   A+LDC+L+FA AA+ + + CP +TEEN ++IV+GRHPIQELC DVFVPN T++    E   + ++TG N SGKS+Y+KQ+A+I  +A++GSFVPA +A+IG  D I TR+ + E+ +  +SSF+ DL Q+   LR +T +SLV++DEFGKGTD  DG+ L+ + +
Sbjct:  496 QFCTSNTVYYKSDRMFELDENLGDIHSIIVDREIELMQKLQETILEYRSPLIKIAHVCAELDCILSFAKAARDYHYNCPQMTEENILHIVKGRHPIQELCTDVFVPNDTSIGDSEELPHIILLTGANFSGKSVYLKQIAIITLMAQIGSFVPAETAIIGITDKILTRIHTRESVSRKQSSFMIDLNQVSNALRCSTRRSLVLLDEFGKGTDLPDGIGLYCSVI 718          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A3N4LY87_9PEZI (Putative DNA mismatch repair protein Msh5 n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LY87_9PEZI)

HSP 1 Score: 221 bits (562), Expect = 2.180e-63
Identity = 107/227 (47.14%), Postives = 158/227 (69.60%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGR-EGCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLL 678
            QF T    YYKN ++ E+DE++GD+Y  I D E  +V EL+  +LKH+++ +  S  +++LDCLL+ A+ A ++K+  P++TEEN I I +GRHP+QE C+ VF+ N T +  G  +  M ++TGPN SGKS+Y+KQ+A+I ++A +GSFVPA  A+IG  D I TR+ + E+ +  ES+F+ DL+Q+ + LR AT +SL+IIDEFGKGTD NDG  L      +LL
Sbjct:  481 QFSTATSFYYKNPQMREMDEYLGDMYGLICDREIELVYELQVEVLKHEDMLIASSHVLSELDCLLSLAEGAAKYKYCRPLITEENVIEITKGRHPLQEQCVSVFIENDTMIRGGPGDPSMLLLTGPNYSGKSVYLKQIAVIVYMAHIGSFVPAAHAIIGLTDKILTRIQTRESASRIESAFVIDLQQIALSLRLATRRSLLIIDEFGKGTDVNDGAGLACGVFEHLL 707          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A8J1UA98_OWEFU (Ofus.G112462 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UA98_OWEFU)

HSP 1 Score: 220 bits (560), Expect = 2.760e-63
Identity = 106/225 (47.11%), Postives = 157/225 (69.78%), Query Frame = 1
Query:    4 FHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGREGCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLL 678
            F +  MV+YK++   E+D  +GD+   I D E  I+  L+  IL+H +V LD  +  A+LDCL+  A+ A+ + +T P LT++N I++  GRHP+QELC   FVPN T  +    G M+++TGPN+SGKSIY+KQVALI F+A++GSF+PA SA++G +D +FTR+ + ET +A  S+F+ DL Q+   + NAT +SLVI+DEFGKGT+++DG+AL  A +   L
Sbjct:  469 FMSSNMVHYKSESTKELDLLLGDVQCEIADQETVIMHRLQNTILEHSQVLLDVMDCAAELDCLITLANCAREYNYTRPQLTQDNIIHVTAGRHPLQELCCSPFVPNET-YSDEHVGRMKVLTGPNASGKSIYLKQVALIVFMAQIGSFIPAESAVVGLMDRLFTRIRTLETVSAGLSTFMMDLSQVSSAVNNATERSLVILDEFGKGTESSDGIALLCATLKQWL 692          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A0D2VJW8_CAPO3 (MSH5 protein n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VJW8_CAPO3)

HSP 1 Score: 221 bits (562), Expect = 7.310e-63
Identity = 111/226 (49.12%), Postives = 158/226 (69.91%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGREGCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLL 678
            QF T   ++YK+ R  E+D+ +GD++  I+D E  I+  L+  +LK         + VA LDC LA A  A+ + +T P++ EEN ++I  GRHP+QELC+D F+PN T L+  + G + IVTGPN+SGKSIY+KQ+A+I FLA+VGSFVPA  A++G VD IFTR+ + E+ +   S+F+ DL Q+ + LR ATA+SLV+IDEFGKGT A DG+AL +A V+ L+
Sbjct:  626 QFVTQHSIHYKSPRTREMDQELGDIHGDIIDRETDIMYGLQKEVLKRTRSVAKIMDLVATLDCFLALASFAREYNYTQPVMMEENVLDITGGRHPLQELCVDTFIPNDTDLSV-QSGPVHIVTGPNASGKSIYLKQIAMIQFLAQVGSFVPAERAVLGCVDRIFTRIHTRESVSVARSTFMIDLNQVVLALRFATARSLVVIDEFGKGTSAADGLALLSAVVSELV 850          
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Match: A0A397TGC6_9GLOM (Muts domain V-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TGC6_9GLOM)

HSP 1 Score: 220 bits (560), Expect = 1.170e-62
Identity = 111/246 (45.12%), Postives = 163/246 (66.26%), Query Frame = 1
Query:    1 QFHTDMMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCSEFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFVPNSTALAHGRE--------------------GCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSAMIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEFGKGTDANDGVALFAACVNNLL 678
            QF T   VYYKNDR+ E+DE++GD++  I+D E  I+++L+  IL++  + L+ +   A+LDCLL+ A++A++FK+  P L  EN + IV+GRHP+QELC+D+FV N T +A G                        + +++G N SGKS+Y+KQVALI ++A +GSFVPA SA IG  D IFTR+ + ET +  +S+F+ DL+Q+ I LRN+T++SL+I DEFGKGT + DG  LF   +  LL
Sbjct:  619 QFSTATTVYYKNDRMKELDEYLGDIHGLIVDREIEIMQKLQDHILEYASLLLNVTAVCAELDCLLSLAESARKFKYCRPHLVNENILEIVKGRHPLQELCVDIFVANDTKIAGGNGVLTNENIDDDSTNTSTSSVYKSVMLLSGANYSGKSVYLKQVALITYMAHIGSFVPADSATIGLTDKIFTRVQTRETVSKIQSAFMIDLQQISIALRNSTSRSLLIFDEFGKGTGSTDGAGLFCGVIEYLL 864          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89048.20643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R4XJA1_TAPDE2.040e-6545.12DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A397V3M1_9GLOM6.870e-6546.15Muts domain V-domain-containing protein n=2 Tax=Gi... [more]
A0A1B6CQJ5_9HEMI5.270e-6447.14DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A139AXG1_GONPJ1.560e-6345.89DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A4S2MQV0_9PEZI1.850e-6345.42DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A507DXQ9_9FUNG2.140e-6347.09DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A3N4LY87_9PEZI2.180e-6347.14Putative DNA mismatch repair protein Msh5 n=1 Tax=... [more]
A0A8J1UA98_OWEFU2.760e-6347.11Ofus.G112462 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A0D2VJW8_CAPO37.310e-6349.12MSH5 protein n=3 Tax=Capsaspora owczarzaki (strain... [more]
A0A397TGC6_9GLOM1.170e-6245.12Muts domain V-domain-containing protein n=1 Tax=Gl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89048contigM-pyrifera_M_contig89048:1..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score219.9
Seed ortholog evalue1.2e-54
Seed eggNOG ortholog5011.R4XJA1
KEGG koko:K08741
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs38FDG@33154,3NVR7@4751,3QJJ8@4890,COG0249@1,KOG0221@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons3
Model size681
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89048.20643.1prot_M-pyrifera_M_contig89048.20643.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89048 1..768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.0482633-CDS-M-pyrifera_M_contig89048:0..4931622816800.0482633-CDS-M-pyrifera_M_contig89048:0..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89048 1..493 -
1692278186.142919-CDS-M-pyrifera_M_contig89048:0..4931692278186.142919-CDS-M-pyrifera_M_contig89048:0..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89048 1..493 -
1622816800.0595717-CDS-M-pyrifera_M_contig89048:546..6541622816800.0595717-CDS-M-pyrifera_M_contig89048:546..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89048 547..654 -
1692278186.1555846-CDS-M-pyrifera_M_contig89048:546..6541692278186.1555846-CDS-M-pyrifera_M_contig89048:546..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89048 547..654 -
1622816800.0722141-CDS-M-pyrifera_M_contig89048:703..7681622816800.0722141-CDS-M-pyrifera_M_contig89048:703..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89048 704..768 -
1692278186.1694162-CDS-M-pyrifera_M_contig89048:703..7681692278186.1694162-CDS-M-pyrifera_M_contig89048:703..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89048 704..768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.0854156-UTR-M-pyrifera_M_contig89048:768..7831622816800.0854156-UTR-M-pyrifera_M_contig89048:768..783Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89048 769..783 -
1692278186.180386-UTR-M-pyrifera_M_contig89048:768..7831692278186.180386-UTR-M-pyrifera_M_contig89048:768..783Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89048 769..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89048.20643.1

>prot_M-pyrifera_M_contig89048.20643.1 ID=prot_M-pyrifera_M_contig89048.20643.1|Name=mRNA_M-pyrifera_M_contig89048.20643.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
MMVYYKNDRVTEIDEHVGDLYSAILDVEGAIVRELETFILKHQEVYLDCS
EFVAQLDCLLAFADAAKRFKWTCPILTEENTINIVEGRHPIQELCLDVFV
PNSTALAHGREGCMQIVTGPNSSGKSIYIKQVALICFLARVGSFVPAHSA
MIGPVDMIFTRLSSFETTTANESSFLADLRQMEIILRNATAKSLVIIDEF
GKGTDANDGVALFAACVNNLLE
back to top

mRNA from alignment at M-pyrifera_M_contig89048:1..783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89048.20643.1 ID=mRNA_M-pyrifera_M_contig89048.20643.1|Name=mRNA_M-pyrifera_M_contig89048.20643.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=783bp|location=Sequence derived from alignment at M-pyrifera_M_contig89048:1..783- (Macrocystis pyrifera P11B4 male)
CAGTTTCACACAGACATGATGGTCTACTACAAGAACGACCGAGTCACAGA GATTGATGAACATGTTGGAGATCTTTACAGGTCAGTCATCCTACAGTTGG TCGCGTTGTATTCACTGACAAGAGCACAGCGCTATTTTGGACGTCGAGGG CGCAATCGTCAGGGAGCTCGAGACCTTCATCCTCAAGCATCAAGAGGTAT ATTTGGATTGCTCCGAGTTTGTGGCGCAGCTCGATTGGTGAGCTTCCTCC CTCTCAGTGGTTGCGGATGTTCCTCGCTGACATGACGTAGTCTCTTGGCT TTTGCAGACGCTGCGAAGCGTTTCAAATGGACGTGTCCTATCTTGACAGA GGAGAACACCATCAACATTGTGGAGGGCCGCCACCCAATCCAAGAACTCT GCTTGGATGTCTTCGTCCCCAACTCAACAGCATTAGCACACGGTAGGGAA GGCTGCATGCAGATCGTCACAGGTCCCAACAGCAGCGGCAAGTCCATCTA CATCAAGCAAGTGGCCCTGATTTGCTTCCTTGCTCGAGTTGGCTCCTTCG TGCCAGCGCACTCCGCAATGATCGGCCCCGTCGACATGATCTTCACTCGG CTCTCATCGTTTGAGACAACCACCGCCAACGAGAGCAGCTTCCTCGCCGA CTTACGCCAGATGGAGATCATCCTCCGTAACGCCACTGCGAAGTCGCTGG TGATCATCGACGAGTTTGGGAAAGGTACTGATGCCAACGATGGTGTCGCC CTCTTTGCAGCGTGCGTCAACAATCTCCTTGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89048:1..783-

>mRNA_M-pyrifera_M_contig89048.20643.1 ID=mRNA_M-pyrifera_M_contig89048.20643.1|Name=mRNA_M-pyrifera_M_contig89048.20643.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig89048:1..783- (Macrocystis pyrifera P11B4 male)
ATGATGGTCTACTACAAGAACGACCGAGTCACAGAGATTGATGAACATGT
TGGAGATCTTTACAGATGATGGTCTACTACAAGAACGACCGAGTCACAGA
GATTGATGAACATGTTGGAGATCTTTACAGCGCTATTTTGGACGTCGAGG
GCGCAATCGTCAGGGAGCTCGAGACCTTCATCCTCAAGCATCAAGAGGTA
TATTTGGATTGCTCCGAGTTTGTGGCGCAGCTCGATTGCGCTATTTTGGA
CGTCGAGGGCGCAATCGTCAGGGAGCTCGAGACCTTCATCCTCAAGCATC
AAGAGGTATATTTGGATTGCTCCGAGTTTGTGGCGCAGCTCGATTGTCTC
TTGGCTTTTGCAGACGCTGCGAAGCGTTTCAAATGGACGTGTCCTATCTT
GACAGAGGAGAACACCATCAACATTGTGGAGGGCCGCCACCCAATCCAAG
AACTCTGCTTGGATGTCTTCGTCCCCAACTCAACAGCATTAGCACACGGT
AGGGAAGGCTGCATGCAGATCGTCACAGGTCCCAACAGCAGCGGCAAGTC
CATCTACATCAAGCAAGTGGCCCTGATTTGCTTCCTTGCTCGAGTTGGCT
CCTTCGTGCCAGCGCACTCCGCAATGATCGGCCCCGTCGACATGATCTTC
ACTCGGCTCTCATCGTTTGAGACAACCACCGCCAACGAGAGCAGCTTCCT
CGCCGACTTACGCCAGATGGAGATCATCCTCCGTAACGCCACTGCGAAGT
CGCTGGTGATCATCGACGAGTTTGGGAAAGGTACTGATGCCAACGATGGT
GTCGCCCTCTTTGCAGCGTGCGTCAACAATCTCCTTGAGTCTCTTGGCTT
TTGCAGACGCTGCGAAGCGTTTCAAATGGACGTGTCCTATCTTGACAGAG
GAGAACACCATCAACATTGTGGAGGGCCGCCACCCAATCCAAGAACTCTG
CTTGGATGTCTTCGTCCCCAACTCAACAGCATTAGCACACGGTAGGGAAG
GCTGCATGCAGATCGTCACAGGTCCCAACAGCAGCGGCAAGTCCATCTAC
ATCAAGCAAGTGGCCCTGATTTGCTTCCTTGCTCGAGTTGGCTCCTTCGT
GCCAGCGCACTCCGCAATGATCGGCCCCGTCGACATGATCTTCACTCGGC
TCTCATCGTTTGAGACAACCACCGCCAACGAGAGCAGCTTCCTCGCCGAC
TTACGCCAGATGGAGATCATCCTCCGTAACGCCACTGCGAAGTCGCTGGT
GATCATCGACGAGTTTGGGAAAGGTACTGATGCCAACGATGGTGTCGCCC
TCTTTGCAGCGTGCGTCAACAATCTCCTTGAG
back to top