mRNA_M-pyrifera_M_contig89043.20642.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89043.20642.1
Unique NamemRNA_M-pyrifera_M_contig89043.20642.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: F4Q7J3_CAVFA (ALG-2 interacting protein X n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q7J3_CAVFA)

HSP 1 Score: 81.6 bits (200), Expect = 4.730e-16
Identity = 38/93 (40.86%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYD 279
            ML+V+ K+T+K +++KPLTKY++++FS E A +H   +N +  LRE++R     +KTE ++  + +YY++  S+E RFPI E  ++I F W D
Sbjct:    1 MLSVDRKRTEKVDVIKPLTKYIKEQFSKEEAADHEQQINTLSSLREDVRNL--QDKTETSKEMIWKYYSILQSLEMRFPISENNVRIQFPWTD 91
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: F0ZDD1_DICPU (BRO1 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZDD1_DICPU)

HSP 1 Score: 80.9 bits (198), Expect = 8.820e-16
Identity = 38/94 (40.43%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYDN 282
            ML+V  K+T+K +L+KPLTKY++++FS   A+ H   +N ++ LRE++R     +KTE ++  +  YY++  S+E RFPI E  ++I+F W D+
Sbjct:    1 MLSVERKRTEKIDLIKPLTKYIKEQFSKGEADAHENQINTLNSLREDVRNL--QDKTETSKELVWRYYSILSSLELRFPISENNVRISFPWTDS 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: L8H1X9_ACACA (Programmed cell death 6 interacting protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1X9_ACACA)

HSP 1 Score: 79.7 bits (195), Expect = 2.250e-15
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYD 279
            ML++  K T+K + L+PL +++ + FS E   +H   LN +H LRE++R     +K+E  R     YY L  +VE+RFPI+E+ IKINF W+D
Sbjct:    1 MLSIPLKTTNKVDFLQPLQQFIVRSFSKEQLQQHEEALNHLHQLREDVRTV--TDKSEHTRDVFCRYYGLLETVEKRFPINEENIKINFVWFD 91
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: A0A8J4PN64_9MYCE (BRO1 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PN64_9MYCE)

HSP 1 Score: 79.0 bits (193), Expect = 4.190e-15
Identity = 37/94 (39.36%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYDN 282
            ML++  K+TDK +++KPLTKY++++FS   A+ H   +  ++ +RE+IR     +KTE ++  L +YY++  S+E RFPI E  ++I+F W D+
Sbjct:    1 MLSIEKKRTDKIDIVKPLTKYIKEQFSKSEADAHETAIQTLNSMREDIRNL--QDKTETSKDMLWKYYSILSSLEIRFPIGESNVRISFPWTDS 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: A0A151ZKM9_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZKM9_9MYCE)

HSP 1 Score: 74.7 bits (182), Expect = 1.320e-13
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYD 279
            ML++  KKTDK +L+KPL+KY++++FS E    H   +  ++  RE+IR     + TE ++  +  YY++  S+E RFPI E  ++I+F W D
Sbjct:  558 MLSIEKKKTDKVDLIKPLSKYIKEQFSKEELTNHENVITNLNQQREQIRNIA--DMTETSKEMVWRYYSVLSSLESRFPISESNVRISFPWTD 648
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: D3BLX9_POLPP (ALG-2 interacting protein X n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BLX9_POLPP)

HSP 1 Score: 68.6 bits (166), Expect = 1.880e-11
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYD 279
            ML+V  K+T+K +L+KPLTKY++++FS E A  H   +  +   RE++R     +KT+ ++  +  YY++  S+E RFPI E  ++I   W D
Sbjct:    1 MLSVERKRTEKVDLIKPLTKYIKEQFSKEEAAAHELQIASLQQQREDVRNL--QDKTDTSKDLIWRYYSVLQSLELRFPISESNVRIYIPWTD 91
[Close]
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Match: A0A6B2KXP0_9EUKA (BRO1 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXP0_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 9.220e-6
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   46 KPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRLSFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYD 279
            KPL  YV KE +++  +     +N +  LRE +RL+   EK +        YYAL  SVERR PI E  +KINF WYD
Sbjct:   20 KPLLGYV-KEVTNQLESIQVA-INEIEKLRETLRLA--TEKKDILLDLHCRYYALLSSVERRIPISETEVKINFNWYD 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89043.20642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
F4Q7J3_CAVFA4.730e-1640.86ALG-2 interacting protein X n=1 Tax=Cavenderia fas... [more]
F0ZDD1_DICPU8.820e-1640.43BRO1 domain-containing protein n=1 Tax=Dictyosteli... [more]
L8H1X9_ACACA2.250e-1541.94Programmed cell death 6 interacting protein, putat... [more]
A0A8J4PN64_9MYCE4.190e-1539.36BRO1 domain-containing protein n=1 Tax=Polysphondy... [more]
A0A151ZKM9_9MYCE1.320e-1338.71Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
D3BLX9_POLPP1.880e-1137.63ALG-2 interacting protein X n=1 Tax=Polysphondyliu... [more]
A0A6B2KXP0_9EUKA9.220e-643.59BRO1 domain-containing protein n=1 Tax=Arcella int... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89043contigM-pyrifera_M_contig89043:403..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog5786.XP_003285446.1
Preferred namePDCD6IP
KEGG koko:K12200
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000815,GO:0000910,GO:0000912,GO:0000915,GO:0000920,GO:0001664,GO:0001772,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005783,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006082,GO:0006508,GO:0006511,GO:0006790,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006996,GO:0007010,GO:0007015,GO:0007032,GO:0007033,GO:0007043,GO:0007049,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008219,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009268,GO:0009308,GO:0009405,GO:0009506,GO:0009628,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010562,GO:0010564,GO:0010565,GO:0010570,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010824,GO:0012501,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016053,GO:0016192,GO:0016197,GO:0016323,GO:0016999,GO:0017000,GO:0017124,GO:0017144,GO:0017145,GO:0017157,GO:0018130,GO:0019058,GO:0019068,GO:0019220,GO:0019222,GO:0019538,GO:0019748,GO:0019752,GO:0019904,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023056,GO:0030011,GO:0030029,GO:0030036,GO:0030041,GO:0030054,GO:0030154,GO:0030163,GO:0030447,GO:0030496,GO:0030653,GO:0030654,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031156,GO:0031285,GO:0031286,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031410,GO:0031871,GO:0031982,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032182,GO:0032268,GO:0032270,GO:0032386,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032787,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033238,GO:0033240,GO:0033244,GO:0033246,GO:0033365,GO:0034248,GO:0034250,GO:0034329,GO:0034330,GO:0034613,GO:0034622,GO:0034641,GO:0035088,GO:0035090,GO:0036176,GO:0036177,GO:0036244,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040007,GO:0040008,GO:0042078,GO:0042173,GO:0042176,GO:0042221,GO:0042306,GO:0042316,GO:0042318,GO:0042325,GO:0042327,GO:0042641,GO:0042762,GO:0042802,GO:0042803,GO:0043130,GO:0043162,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043297,GO:0043408,GO:0043410,GO:0043436,GO:0043455,GO:0043603,GO:0043604,GO:0043621,GO:0043632,GO:0043900,GO:0043901,GO:0043933,GO:0043937,GO:0043938,GO:0044085,GO:0044087,GO:0044089,GO:0044106,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044409,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044550,GO:0044703,GO:0044837,GO:0045171,GO:0045197,GO:0045199,GO:0045216,GO:0045595,GO:0045596,GO:0045597,GO:0045881,GO:0045921,GO:0045927,GO:0045937,GO:0046328,GO:0046330,GO:0046394,GO:0046483,GO:0046605,GO:0046755,GO:0046822,GO:0046903,GO:0046907,GO:0046983,GO:0048132,GO:0048133,GO:0048232,GO:0048306,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051176,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051258,GO:0051259,GO:0051260,GO:0051301,GO:0051493,GO:0051603,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051828,GO:0055037,GO:0055044,GO:0060255,GO:0060341,GO:0060627,GO:0061245,GO:0061640,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0070062,GO:0070201,GO:0070302,GO:0070304,GO:0070507,GO:0070727,GO:0070830,GO:0070887,GO:0070925,GO:0070938,GO:0070971,GO:0071214,GO:0071241,GO:0071248,GO:0071285,GO:0071467,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072338,GO:0072339,GO:0075260,GO:0075262,GO:0080090,GO:0080134,GO:0080135,GO:0090033,GO:0090087,GO:0090543,GO:0090559,GO:0090611,GO:0097435,GO:0097708,GO:0097734,GO:0098588,GO:0098590,GO:0098722,GO:0098728,GO:0098796,GO:0098805,GO:0104004,GO:0140112,GO:1900180,GO:1900196,GO:1900198,GO:1900376,GO:1900378,GO:1900428,GO:1900430,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902115,GO:1902117,GO:1902531,GO:1902533,GO:1903047,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903551,GO:1903553,GO:1903561,GO:1903827,GO:1904589,GO:1990182,GO:2000026,GO:2000241,GO:2000242
EggNOG free text desc.BRO1-like domain
EggNOG OGs3X8XX@554915,KOG2220@1,KOG2220@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons3
Model size282
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89043.20642.1prot_M-pyrifera_M_contig89043.20642.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89043 403..800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.991603-CDS-M-pyrifera_M_contig89043:402..5991622816799.991603-CDS-M-pyrifera_M_contig89043:402..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89043 403..599 +
1692278186.1005874-CDS-M-pyrifera_M_contig89043:402..5991692278186.1005874-CDS-M-pyrifera_M_contig89043:402..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89043 403..599 +
1622816800.0028653-CDS-M-pyrifera_M_contig89043:658..7131622816800.0028653-CDS-M-pyrifera_M_contig89043:658..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89043 659..713 +
1692278186.1198523-CDS-M-pyrifera_M_contig89043:658..7131692278186.1198523-CDS-M-pyrifera_M_contig89043:658..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89043 659..713 +
1622816800.0135982-CDS-M-pyrifera_M_contig89043:770..8001622816800.0135982-CDS-M-pyrifera_M_contig89043:770..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89043 771..800 +
1692278186.1324112-CDS-M-pyrifera_M_contig89043:770..8001692278186.1324112-CDS-M-pyrifera_M_contig89043:770..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89043 771..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89043.20642.1

>prot_M-pyrifera_M_contig89043.20642.1 ID=prot_M-pyrifera_M_contig89043.20642.1|Name=mRNA_M-pyrifera_M_contig89043.20642.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MLAVNTKKTDKAELLKPLTKYVQKEFSSEAANEHSGPLNRVHGLREEIRL
SFGNEKTEAARAKLLEYYALACSVERRFPIHEKGIKINFYWYDN
back to top

mRNA from alignment at M-pyrifera_M_contig89043:403..800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89043.20642.1 ID=mRNA_M-pyrifera_M_contig89043.20642.1|Name=mRNA_M-pyrifera_M_contig89043.20642.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=398bp|location=Sequence derived from alignment at M-pyrifera_M_contig89043:403..800+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCGGTGAATACGAAGAAGACGGACAAGGCAGAGCTGCTGAAGCC
GCTCACGAAGTATGTACAGAAGGAGTTCTCGAGTGAAGCAGCGAATGAGC
ACTCTGGGCCGCTGAACAGAGTCCATGGCCTGCGGGAGGAGATACGACTG
AGCTTTGGCAACGAAAAGACAGAGGCGGCGAGGGCAAAGCTCCTGGAGTG
CGTTCACCCTCTCTCGCCTGCCTGTGCTGCCGCTGCTGACGCCTGTGCCT
CCCCAGGTACTATGCCCTCGCCTGCTCCGTCGAGCGTCGCTTTCCCATCC
ACGAGAAGGGAGTGCGTGGCCCCAGCCCTCCCCCCGCCCGCACCCCGCGC
CCTTGCTGACGTGCGCAGATCAAGATCAACTTCTACTGGTACGACAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89043:403..800+

>mRNA_M-pyrifera_M_contig89043.20642.1 ID=mRNA_M-pyrifera_M_contig89043.20642.1|Name=mRNA_M-pyrifera_M_contig89043.20642.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig89043:403..800+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCGGTGAATACGAAGAAGACGGACAAGGCAGAGCTGCTGAAGCC
GCTCACGAAGTATGTACAGAAGGAGTTCTCGAGTGAAGCAGCGAATGAGC
ACTCTGGGCCGCTGAACAGAGTCCATGGCCTGCGGGAGGAGATACGACTG
AGCTTTGGCAACGAAAAGACAGAGGCGGCGAGGGCAAAGCTCCTGGAATG
CTGGCGGTGAATACGAAGAAGACGGACAAGGCAGAGCTGCTGAAGCCGCT
CACGAAGTATGTACAGAAGGAGTTCTCGAGTGAAGCAGCGAATGAGCACT
CTGGGCCGCTGAACAGAGTCCATGGCCTGCGGGAGGAGATACGACTGAGC
TTTGGCAACGAAAAGACAGAGGCGGCGAGGGCAAAGCTCCTGGAGTACTA
TGCCCTCGCCTGCTCCGTCGAGCGTCGCTTTCCCATCCACGAGAAGGGAG
TACTATGCCCTCGCCTGCTCCGTCGAGCGTCGCTTTCCCATCCACGAGAA
GGGAATCAAGATCAACTTCTACTGGTACGACAACATCAAGATCAACTTCT
ACTGGTACGACAAC
back to top