mRNA_M-pyrifera_M_contig8903.20640.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8903.20640.1
Unique NamemRNA_M-pyrifera_M_contig8903.20640.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8903.20640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8903contigM-pyrifera_M_contig8903:806..2077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size470
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8903.20640.1prot_M-pyrifera_M_contig8903.20640.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8903 1161..2048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.8561952-UTR-M-pyrifera_M_contig8903:805..8571622816799.8561952-UTR-M-pyrifera_M_contig8903:805..857Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8903 806..857 +
1692278186.0062044-UTR-M-pyrifera_M_contig8903:805..8571692278186.0062044-UTR-M-pyrifera_M_contig8903:805..857Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8903 806..857 +
1622816799.8666294-UTR-M-pyrifera_M_contig8903:1059..11601622816799.8666294-UTR-M-pyrifera_M_contig8903:1059..1160Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8903 1060..1160 +
1692278186.0169728-UTR-M-pyrifera_M_contig8903:1059..11601692278186.0169728-UTR-M-pyrifera_M_contig8903:1059..1160Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8903 1060..1160 +
1622816799.9146721-UTR-M-pyrifera_M_contig8903:2048..20771622816799.9146721-UTR-M-pyrifera_M_contig8903:2048..2077Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8903 2049..2077 +
1692278186.0701728-UTR-M-pyrifera_M_contig8903:2048..20771692278186.0701728-UTR-M-pyrifera_M_contig8903:2048..2077Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8903 2049..2077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.8786142-CDS-M-pyrifera_M_contig8903:1160..11871622816799.8786142-CDS-M-pyrifera_M_contig8903:1160..1187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8903 1161..1187 +
1692278186.0267377-CDS-M-pyrifera_M_contig8903:1160..11871692278186.0267377-CDS-M-pyrifera_M_contig8903:1160..1187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8903 1161..1187 +
1622816799.8897371-CDS-M-pyrifera_M_contig8903:1598..17161622816799.8897371-CDS-M-pyrifera_M_contig8903:1598..1716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8903 1599..1716 +
1692278186.040801-CDS-M-pyrifera_M_contig8903:1598..17161692278186.040801-CDS-M-pyrifera_M_contig8903:1598..1716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8903 1599..1716 +
1622816799.9011323-CDS-M-pyrifera_M_contig8903:1905..20481622816799.9011323-CDS-M-pyrifera_M_contig8903:1905..2048Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8903 1906..2048 +
1692278186.0592794-CDS-M-pyrifera_M_contig8903:1905..20481692278186.0592794-CDS-M-pyrifera_M_contig8903:1905..2048Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8903 1906..2048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8903.20640.1

>prot_M-pyrifera_M_contig8903.20640.1 ID=prot_M-pyrifera_M_contig8903.20640.1|Name=mRNA_M-pyrifera_M_contig8903.20640.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MRPDDRDIQEDCQPTTKLCFGVCETRMTPDHKNHGGVVRGMMQQAPPKKF
RKLPGMRTTQGWMVSDRPWTHFWTSKDVSCLLTLAQGRKTNAEEN*
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mRNA from alignment at M-pyrifera_M_contig8903:806..2077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8903.20640.1 ID=mRNA_M-pyrifera_M_contig8903.20640.1|Name=mRNA_M-pyrifera_M_contig8903.20640.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig8903:806..2077+ (Macrocystis pyrifera P11B4 male)
GGCGACTTCAACAACGAGGACCTTCCTACCGGGAACACCGCGAAAGGAGC
AGGTGAGTCATTGGTTGTTTGCTGGGGCTCTAACGTGAGGATGGCATGCG
GGTAAACATTCTACTTTTTTGCGTATGGTGGAGTCTGACACTTCTGATGC
TTGCGAACGATATTGTGTAGCCCTTGCGTGTGATTGAGACTTCGGTTTCA
CTGTTCTTTACGCTCATCTGGCGTGGACCGCATAATTTTTTAACCAATTG
CCAGATAATTCTGATGCCGGAGGTGGCGACGCTGCAAGTGGAGCCAGAGC
AGGCACCGAGTGGATCGGTCTCGCCCTTGGTCTGGACGACAGAGTCGCGG
GTCTAATGCGACCAGACGACAGGGATATACAGGTGAGCGGCGGGTGTAGA
TGCTTGTATATAACTATCGAAACGACATGTAGAGGCTTGTTCACTTCGGT
CCGTGTGTTGGCAGCCTGCTCGCGGTTACGAATCGTGCTAAGGCAAGGGG
AGTACTCTTGTTGGCAGGGAGATGGCTAGCTAGTTTTCTTGAAAAAATAG
ATAACGGTACTAATGTAGTAATATAACTTCTATAATGTGATATGTAAACT
GGGTCAAATGCGCGTACCTTTCGGATGTACAAGATTGGCTGCTCCCTAAA
ATCGGCGGGAACGCTTCGAAGTCGTTTTCGGGCCACAACCAATCACCGCT
GTCGCGGCAACACTATTTTTGCCTTCTGGTTGCGTCATATATTCTTAGCT
ACCGCCGGTATCTTTGCACCCTCTTCGTCTTTTCCACCAACAGGAAGATT
GCCAGCCAACTACAAAGCTATGCTTCGGTGTCTGCGAAACGCGCATGACT
CCCGATCATAAAAATCACGGCGGGGTCGTCAGGGGGATGATGCAGCAAGC
GCCGCCCAAGAGTTTAAGCACTGCCGTGGCCACGCCTCGAATGTTTACTC
CCAACCCCTCAATGCGGGATTCGTTGGCGGCGCCCATCGTCGCAGCCGGG
ACGGTGGGGGCAAGGCTGGAGATGTGAATCCTCGCCTTGTGGGTAGATAT
CGCCAGGGGAGGGGGTGGGCGGAGGGAATGGCGGTCGTACACCGATGGAG
AATTCCGGAAGTTGCCAGGAATGCGCACAACGCAAGGGTGGATGGTCTCA
GATCGACCCTGGACCCATTTTTGGACGAGCAAGGACGTATCGTGCCTGCT
GACCCTCGCCCAGGGAAGGAAAACGAACGCAGAGGAAAATTGAGCTTCCT
CCTTGCAAGTTCCCACTGGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8903:806..2077+

>mRNA_M-pyrifera_M_contig8903.20640.1 ID=mRNA_M-pyrifera_M_contig8903.20640.1|Name=mRNA_M-pyrifera_M_contig8903.20640.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig8903:806..2077+ (Macrocystis pyrifera P11B4 male)
ATGCGACCAGACGACAGGGATATACAGATGCGACCAGACGACAGGGATAT
ACAGGAAGATTGCCAGCCAACTACAAAGCTATGCTTCGGTGTCTGCGAAA
CGCGCATGACTCCCGATCATAAAAATCACGGCGGGGTCGTCAGGGGGATG
ATGCAGCAAGCGCCGCCCAAGAGAAGATTGCCAGCCAACTACAAAGCTAT
GCTTCGGTGTCTGCGAAACGCGCATGACTCCCGATCATAAAAATCACGGC
GGGGTCGTCAGGGGGATGATGCAGCAAGCGCCGCCCAAGAAATTCCGGAA
GTTGCCAGGAATGCGCACAACGCAAGGGTGGATGGTCTCAGATCGACCCT
GGACCCATTTTTGGACGAGCAAGGACGTATCGTGCCTGCTGACCCTCGCC
CAGGGAAGGAAAACGAACGCAGAGGAAAATTGAAATTCCGGAAGTTGCCA
GGAATGCGCACAACGCAAGGGTGGATGGTCTCAGATCGACCCTGGACCCA
TTTTTGGACGAGCAAGGACGTATCGTGCCTGCTGACCCTCGCCCAGGGAA
GGAAAACGAACGCAGAGGAAAATTGA
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