mRNA_M-pyrifera_M_contig8902.20639.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8902.20639.1
Unique NamemRNA_M-pyrifera_M_contig8902.20639.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8902.20639.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.020e-9
Identity = 32/102 (31.37%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    1 RCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNIFKMAPESNPLEEMGRIEDLAAEMRTAGMSVDDHMLCTIFIDALPAEYEVEARNLASRGSIGRHDIIKAV 306
            RC +P+QA D L   + P++  A  +L  +   F M  + NP E +  +E LA+ +   G+ V+   + ++F+ ALPAEY+     L S  ++ R ++I+ V
Sbjct:  226 RCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKLTLQSAPTLDRGEVIRVV 327
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BLAST of mRNA_M-pyrifera_M_contig8902.20639.1 vs. uniprot
Match: A0A6H5JJW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.260e-8
Identity = 27/81 (33.33%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    1 RCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNIFKMAPESNPLEEMGRIEDLAAEMRTAGMSVDDHMLCTIFIDALPAEYE 243
            RC +P+QA D L   + P++  A  +L  +   F M  + NP E +  +E LA+ +   G+ V+   + ++F+ ALPAEY+
Sbjct:  104 RCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYD 184
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8902.20639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPB8_9PHAE1.020e-931.37CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
A0A6H5JJW6_9PHAE7.260e-833.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8902contigM-pyrifera_M_contig8902:392..697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.8247426-CDS-M-pyrifera_M_contig8902:391..6971622816799.8247426-CDS-M-pyrifera_M_contig8902:391..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8902 392..697 -
1692278185.9951496-CDS-M-pyrifera_M_contig8902:391..6971692278185.9951496-CDS-M-pyrifera_M_contig8902:391..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8902 392..697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8902.20639.1prot_M-pyrifera_M_contig8902.20639.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8902 392..697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8902.20639.1

>prot_M-pyrifera_M_contig8902.20639.1 ID=prot_M-pyrifera_M_contig8902.20639.1|Name=mRNA_M-pyrifera_M_contig8902.20639.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
RCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNIFKMAPESNPLEEMGRIE
DLAAEMRTAGMSVDDHMLCTIFIDALPAEYEVEARNLASRGSIGRHDIIK
AV
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mRNA from alignment at M-pyrifera_M_contig8902:392..697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8902.20639.1 ID=mRNA_M-pyrifera_M_contig8902.20639.1|Name=mRNA_M-pyrifera_M_contig8902.20639.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig8902:392..697- (Macrocystis pyrifera P11B4 male)
CGGTGTACCTCGCCGAGGCAAGCGTGGGACGCTCTCCTTGCGTGGTACGG
CCCTCAGACGACGGGGGCCAAATCAGACCTCTCCCGACGCCTTAACATTT
TTAAGATGGCGCCGGAGAGCAACCCGCTCGAGGAGATGGGCAGGATCGAG
GATCTTGCCGCGGAAATGCGAACAGCAGGAATGTCAGTAGACGACCACAT
GCTGTGCACCATCTTTATTGACGCTCTGCCTGCCGAATACGAAGTGGAGG
CTCGGAACCTGGCATCACGTGGCAGCATCGGCCGTCATGACATCATCAAG
GCTGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8902:392..697-

>mRNA_M-pyrifera_M_contig8902.20639.1 ID=mRNA_M-pyrifera_M_contig8902.20639.1|Name=mRNA_M-pyrifera_M_contig8902.20639.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig8902:392..697- (Macrocystis pyrifera P11B4 male)
CGGTGTACCTCGCCGAGGCAAGCGTGGGACGCTCTCCTTGCGTGGTACGG
CCCTCAGACGACGGGGGCCAAATCAGACCTCTCCCGACGCCTTAACATTT
TTAAGATGGCGCCGGAGAGCAACCCGCTCGAGGAGATGGGCAGGATCGAG
GATCTTGCCGCGGAAATGCGAACAGCAGGAATGTCAGTAGACGACCACAT
GCTGTGCACCATCTTTATTGACGCTCTGCCTGCCGAATACGAAGTGGAGG
CTCGGAACCTGGCATCACGTGGCAGCATCGGCCGTCATGACATCATCAAG
GCTGTTCGGTGTACCTCGCCGAGGCAAGCGTGGGACGCTCTCCTTGCGTG
GTACGGCCCTCAGACGACGGGGGCCAAATCAGACCTCTCCCGACGCCTTA
ACATTTTTAAGATGGCGCCGGAGAGCAACCCGCTCGAGGAGATGGGCAGG
ATCGAGGATCTTGCCGCGGAAATGCGAACAGCAGGAATGTCAGTAGACGA
CCACATGCTGTGCACCATCTTTATTGACGCTCTGCCTGCCGAATACGAAG
TGGAGGCTCGGAACCTGGCATCACGTGGCAGCATCGGCCGTCATGACATC
ATCAAGGCTGTT
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