mRNA_M-pyrifera_M_contig88990.20636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88990.20636.1
Unique NamemRNA_M-pyrifera_M_contig88990.20636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A6I6AGK9_9PLAN (NAD(P)/FAD-dependent oxidoreductase n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AGK9_9PLAN)

HSP 1 Score: 278 bits (710), Expect = 1.010e-90
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKDM 426
            SLGTQV KVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSG+LLALKSGELAADAIVEGL+KNDTSKE LGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVK YPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKDM
Sbjct:  267 SLGTQVEKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGILLALKSGELAADAIVEGLRKNDTSKEQLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKRYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKDM 408          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A6C7J7_9PLAN (Probable alkylhalidase n=2 Tax=Gimesia maris TaxID=122 RepID=A6C7J7_9PLAN)

HSP 1 Score: 239 bits (610), Expect = 1.120e-78
Identity = 113/141 (80.14%), Postives = 133/141 (94.33%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKD 423
            S G QVA ++AT+DFTYR+KQAAGNGWVLVGDALGFLDPLYSSG+LLALKSGELAADAIV+GL +NDTS+E LG WA+EYF+GM+RMRRLVVEFYNGFNFG+FV+ +PHHKGN+T+LLIGDLFK +LDQVFLDID+MKS++
Sbjct:   34 STGKQVAAMKATKDFTYRTKQAAGNGWVLVGDALGFLDPLYSSGILLALKSGELAADAIVDGLNRNDTSEEQLGVWAKEYFEGMDRMRRLVVEFYNGFNFGDFVRRFPHHKGNITDLLIGDLFKADLDQVFLDIDQMKSEE 174          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A517XC34_9PLAN (Epoxidase LasC n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517XC34_9PLAN)

HSP 1 Score: 239 bits (610), Expect = 2.310e-75
Identity = 113/141 (80.14%), Postives = 133/141 (94.33%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKD 423
            S G QVA ++AT+DFTYR+KQAAGNGWVLVGDALGFLDPLYSSG+LLALKSGELAADAIV+GL +NDTS+E LG WA+EYF+GM+RMRRLVVEFYNGFNFG+FV+ +PHHKGN+T+LLIGDLFK +LDQVFLDID+MKS++
Sbjct:  283 STGKQVAAMKATKDFTYRTKQAAGNGWVLVGDALGFLDPLYSSGILLALKSGELAADAIVDGLNRNDTSEEQLGVWAKEYFEGMDRMRRLVVEFYNGFNFGDFVRRFPHHKGNITDLLIGDLFKADLDQVFLDIDQMKSEE 423          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A5C6CLL6_9BACT (Uncharacterized protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CLL6_9BACT)

HSP 1 Score: 215 bits (547), Expect = 4.100e-66
Identity = 102/139 (73.38%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKS 417
            S+G Q+A V+AT+D+TYR+ QAAG+GWVLVGDA GFLDPLYSSGVLLALKSGELAADAI+EGL+  DTS+  LGKW   Y +GMNRMRRLV E+Y+GFNFGEF++ +P+H+GNVT+LLIGDLFK ELDQVF DID MK+
Sbjct:  267 SIGEQIAPVKATKDYTYRASQAAGDGWVLVGDAFGFLDPLYSSGVLLALKSGELAADAIIEGLQIGDTSRTQLGKWEPGYVEGMNRMRRLVCEYYDGFNFGEFIRRFPNHRGNVTDLLIGDLFKHELDQVFEDIDSMKT 405          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A517MH98_9BACT (FAD-dependent oxidoreductase LodB n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MH98_9BACT)

HSP 1 Score: 214 bits (545), Expect = 8.180e-66
Identity = 103/139 (74.10%), Postives = 121/139 (87.05%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKS 417
            S+  Q A V+AT+D+TYR+ QAAG+GWVLVGDA GFLDPLYSSGVLLALKSGELAADAIVEGL+  DTS+  LGKW   Y KGMNRMRRLV E+Y+GFNFG+F++ +P+H+GNVT+LLIGDLFKDELDQVF DID MK+
Sbjct:  267 SMAKQKAPVKATKDYTYRASQAAGDGWVLVGDAFGFLDPLYSSGVLLALKSGELAADAIVEGLQIGDTSRTQLGKWEAGYVKGMNRMRRLVCEYYDGFNFGQFIRKFPNHRGNVTDLLIGDLFKDELDQVFEDIDSMKT 405          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A518G7U8_9BACT (Kynurenine 3-monooxygenase n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518G7U8_9BACT)

HSP 1 Score: 210 bits (535), Expect = 2.590e-64
Identity = 100/139 (71.94%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKS 417
            S   QVA V+AT+D+TYR+ QAAG+GWVLVGDA GFLDPLYSSGV+LALKSGELAADAIVEGL+K DTS+  +GKW   + +GMNRMRRLV E+Y GFNFGEF++ +PHH+G+VT+LLIGDLF+ ELDQVF DID M+S
Sbjct:  267 SNAKQVAPVKATKDYTYRASQAAGDGWVLVGDAFGFLDPLYSSGVMLALKSGELAADAIVEGLQKGDTSQAQIGKWEAGFVEGMNRMRRLVCEYYEGFNFGEFIRRFPHHRGSVTDLLIGDLFRQELDQVFDDIDSMRS 405          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A5C6CAZ2_9BACT (Putative FAD-dependent oxidoreductase LodB n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6CAZ2_9BACT)

HSP 1 Score: 209 bits (532), Expect = 7.300e-64
Identity = 99/136 (72.79%), Postives = 118/136 (86.76%), Query Frame = 1
Query:   13 QVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSK 420
            Q++ V+AT+D+TYR+ QAAG+GWVLVGDA GFLDPLYSSGVLLALKSGELAADAI+EGL+  DTS+  LGKW   Y +GMNRMRRLV E+Y+GFNFGEF++ +PHH+G+VT+LLIGDLFK ELD VF DID MK K
Sbjct:  271 QMSPVKATKDYTYRASQAAGDGWVLVGDAFGFLDPLYSSGVLLALKSGELAADAIIEGLQSGDTSRAQLGKWEAGYVEGMNRMRRLVCEYYDGFNFGEFIRRFPHHRGSVTDLLIGDLFKTELDSVFDDIDTMKPK 406          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A0J1BFB8_RHOIS (FAD-binding protein n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1BFB8_RHOIS)

HSP 1 Score: 209 bits (532), Expect = 7.300e-64
Identity = 100/138 (72.46%), Postives = 120/138 (86.96%), Query Frame = 1
Query:   13 QVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKDM 426
            QVA V+AT+D+TYR+ QAAG+GWVLVGDA GFLDPLYSSGVLLALKSGELAADAIVEGL+  DTS+  +GKW   + +GMNRMRRLV E+Y+GF+FGEF++ +P H+G+VT+LLIGDLFK ELDQVF DID MKS D+
Sbjct:  271 QVAPVKATKDYTYRASQAAGDGWVLVGDAFGFLDPLYSSGVLLALKSGELAADAIVEGLRNGDTSRAQIGKWETGFVEGMNRMRRLVCEYYDGFSFGEFIRRFPQHRGSVTDLLIGDLFKPELDQVFEDIDSMKSADV 408          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: UPI0013DBBF36 (tryptophan 7-halogenase n=1 Tax=Candidatus Laterigemmans baculatus TaxID=2770505 RepID=UPI0013DBBF36)

HSP 1 Score: 206 bits (523), Expect = 1.630e-62
Identity = 99/139 (71.22%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    1 SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKS 417
            S+G QVAK+ AT+D+TYRS + AG+GWVLVGDA GFLDPLYSSGVLLALKSG+LAADAI EGL K DTS+  LG W  EY KGM+RMRRLV E+Y+G +FG+FV+ YPHH G VT+LLIGDLFKD+LD VF  ID MK+
Sbjct:  267 SMGKQVAKIFATKDYTYRSSRVAGDGWVLVGDAFGFLDPLYSSGVLLALKSGQLAADAITEGLGKGDTSEAQLGGWGPEYLKGMDRMRRLVCEYYDGLSFGQFVRRYPHHGGGVTDLLIGDLFKDDLDAVFESIDEMKA 405          
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Match: A0A518CA52_9BACT (FAD-dependent oxidoreductase LodB n=5 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518CA52_9BACT)

HSP 1 Score: 205 bits (521), Expect = 3.420e-62
Identity = 98/136 (72.06%), Postives = 116/136 (85.29%), Query Frame = 1
Query:   13 QVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNFGEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSK 420
            QV K+ AT+DFTY+SKQAAG+GWVL+GDALGFLDPLYSSGVLLALKSGELAADAIVEGLKK DTS+  L  W  EY  GM RMR+LV E+Y+GFNFG FV+ +P+H+G++T+LLIGDLFKD LD+VF  I  MKS+
Sbjct:  272 QVTKIFATKDFTYKSKQAAGDGWVLIGDALGFLDPLYSSGVLLALKSGELAADAIVEGLKKGDTSRNQLAHWEREYMVGMERMRKLVCEYYDGFNFGRFVRRFPNHRGDITDLLIGDLFKDSLDEVFESIATMKSE 407          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88990.20636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6AGK9_9PLAN1.010e-9096.48NAD(P)/FAD-dependent oxidoreductase n=3 Tax=Gimesi... [more]
A6C7J7_9PLAN1.120e-7880.14Probable alkylhalidase n=2 Tax=Gimesia maris TaxID... [more]
A0A517XC34_9PLAN2.310e-7580.14Epoxidase LasC n=4 Tax=Gimesia TaxID=1649453 RepID... [more]
A0A5C6CLL6_9BACT4.100e-6673.38Uncharacterized protein n=1 Tax=Novipirellula gale... [more]
A0A517MH98_9BACT8.180e-6674.10FAD-dependent oxidoreductase LodB n=1 Tax=Roseimar... [more]
A0A518G7U8_9BACT2.590e-6471.94Kynurenine 3-monooxygenase n=2 Tax=Pirellulaceae T... [more]
A0A5C6CAZ2_9BACT7.300e-6472.79Putative FAD-dependent oxidoreductase LodB n=1 Tax... [more]
A0A0J1BFB8_RHOIS7.300e-6472.46FAD-binding protein n=1 Tax=Rhodopirellula islandi... [more]
UPI0013DBBF361.630e-6271.22tryptophan 7-halogenase n=1 Tax=Candidatus Laterig... [more]
A0A518CA52_9BACT3.420e-6272.06FAD-dependent oxidoreductase LodB n=5 Tax=Pirellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88990contigM-pyrifera_M_contig88990:382..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score239.2
Seed ortholog evalue1.2e-60
Seed eggNOG ortholog344747.PM8797T_29583
KEGG rclassRC01363
KEGG koko:K16033
KEGG ReactionR09851
KEGG Pathwayko01051,ko01052,ko01130,map01051,map01052,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG0644 Dehydrogenases (flavoproteins)
EggNOG OGs2IX1U@203682,COG0644@1,COG0644@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.6491795-CDS-M-pyrifera_M_contig88990:381..8101622816799.6491795-CDS-M-pyrifera_M_contig88990:381..810Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88990 382..810 -
1692278185.898592-CDS-M-pyrifera_M_contig88990:381..8101692278185.898592-CDS-M-pyrifera_M_contig88990:381..810Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88990 382..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88990.20636.1prot_M-pyrifera_M_contig88990.20636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88990 382..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88990.20636.1

>prot_M-pyrifera_M_contig88990.20636.1 ID=prot_M-pyrifera_M_contig88990.20636.1|Name=mRNA_M-pyrifera_M_contig88990.20636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
SLGTQVAKVRATRDFTYRSKQAAGNGWVLVGDALGFLDPLYSSGVLLALK
SGELAADAIVEGLKKNDTSKELLGKWAEEYFKGMNRMRRLVVEFYNGFNF
GEFVKCYPHHKGNVTNLLIGDLFKDELDQVFLDIDRMKSKDM*
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mRNA from alignment at M-pyrifera_M_contig88990:382..810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88990.20636.1 ID=mRNA_M-pyrifera_M_contig88990.20636.1|Name=mRNA_M-pyrifera_M_contig88990.20636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig88990:382..810- (Macrocystis pyrifera P11B4 male)
TCGCTGGGAACTCAGGTAGCGAAGGTCAGGGCAACCAGGGATTTTACTTA TCGCTCTAAACAGGCTGCGGGAAATGGTTGGGTACTCGTTGGAGATGCTT TAGGGTTTCTTGATCCCCTCTATTCTTCAGGCGTTCTGCTAGCTCTAAAG TCGGGCGAATTAGCGGCGGATGCGATTGTCGAAGGACTCAAAAAGAATGA TACTTCGAAAGAGCTGCTTGGAAAGTGGGCTGAGGAGTATTTCAAGGGAA TGAATCGTATGCGCCGCCTCGTGGTTGAGTTTTATAATGGCTTCAACTTC GGTGAATTTGTGAAATGTTATCCACACCATAAAGGTAACGTCACAAATCT GTTGATCGGCGATTTATTCAAGGACGAGCTGGATCAGGTATTCCTCGATA TCGATCGAATGAAATCCAAAGATATGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88990:382..810-

>mRNA_M-pyrifera_M_contig88990.20636.1 ID=mRNA_M-pyrifera_M_contig88990.20636.1|Name=mRNA_M-pyrifera_M_contig88990.20636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig88990:382..810- (Macrocystis pyrifera P11B4 male)
TCGCTGGGAACTCAGGTAGCGAAGGTCAGGGCAACCAGGGATTTTACTTA
TCGCTCTAAACAGGCTGCGGGAAATGGTTGGGTACTCGTTGGAGATGCTT
TAGGGTTTCTTGATCCCCTCTATTCTTCAGGCGTTCTGCTAGCTCTAAAG
TCGGGCGAATTAGCGGCGGATGCGATTGTCGAAGGACTCAAAAAGAATGA
TACTTCGAAAGAGCTGCTTGGAAAGTGGGCTGAGGAGTATTTCAAGGGAA
TGAATCGTATGCGCCGCCTCGTGGTTGAGTTTTATAATGGCTTCAACTTC
GGTGAATTTGTGAAATGTTATCCACACCATAAAGGTAACGTCACAAATCT
GTTGATCGGCGATTTATTCAAGGACGAGCTGGATCAGGTATTCCTCGATA
TCGATCGAATGAAATCCAAAGATATGTAATCGCTGGGAACTCAGGTAGCG
AAGGTCAGGGCAACCAGGGATTTTACTTATCGCTCTAAACAGGCTGCGGG
AAATGGTTGGGTACTCGTTGGAGATGCTTTAGGGTTTCTTGATCCCCTCT
ATTCTTCAGGCGTTCTGCTAGCTCTAAAGTCGGGCGAATTAGCGGCGGAT
GCGATTGTCGAAGGACTCAAAAAGAATGATACTTCGAAAGAGCTGCTTGG
AAAGTGGGCTGAGGAGTATTTCAAGGGAATGAATCGTATGCGCCGCCTCG
TGGTTGAGTTTTATAATGGCTTCAACTTCGGTGAATTTGTGAAATGTTAT
CCACACCATAAAGGTAACGTCACAAATCTGTTGATCGGCGATTTATTCAA
GGACGAGCTGGATCAGGTATTCCTCGATATCGATCGAATGAAATCCAAAG
ATATGTAA
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