mRNA_M-pyrifera_M_contig8892.20628.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8892.20628.1
Unique NamemRNA_M-pyrifera_M_contig8892.20628.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: D8LF06_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF06_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 2.110e-121
Identity = 180/209 (86.12%), Postives = 194/209 (92.82%), Query Frame = 1 
Query:    1 FVVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVVRGPPKPDMGAAGAGEDMEDAAVPVQG 627
            FVVLAADAQVARSILLYK+NMDKI HLA+NKALACAGPQSDCV+FTEYI+KNM L+ELNN+V LTTKAAAT+IRGELAKALRKGPFQTQ+LM GVDKR   KDEASLFW+DYLGTLQKVPYGAHGYGAAFTLSVMDREY+KGL++DEAL IIDNCI ELHTRFLIAQKNFVIKVVTA+GIKVVRGPP PD+GAAGA    E AAVPVQG
Sbjct:   12 FVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIKVVTAEGIKVVRGPPTPDLGAAGA--SAEAAAVPVQG 218
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A836CPT6_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT6_9STRA)

HSP 1 Score: 223 bits (568), Expect = 8.180e-69
Identity = 115/184 (62.50%), Postives = 142/184 (77.17%), Query Frame = 1 
Query:    1 FVVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVVR 552
            FVVLAADAQVARSILLY++++DKI  L  +K +A AGPQ+DC  F EYI KNM L+ELNN++ L+TKAAA YIR ELA ALRKGP+Q  +LM GVD  A     A+L+W+DYLGTLQ V YGA GYGAAFTLS++DR Y  G+   +A+ ++ +CI  LH RFLIAQ NFVIKVV  DGI+V++
Sbjct:   12 FVVLAADAQVARSILLYQNDLDKIKELDSHKMMALAGPQADCNLFGEYIQKNMALYELNNDLRLSTKAAANYIRRELATALRKGPYQVNMLMGGVDAGA-----AALYWLDYLGTLQPVKYGAQGYGAAFTLSLLDRSYRVGMAEADAVELVRSCIAALHKRFLIAQPNFVIKVVDKDGIRVLK 190
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A6U4C0Y9_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4C0Y9_9STRA)

HSP 1 Score: 207 bits (526), Expect = 7.450e-62
Identity = 100/183 (54.64%), Postives = 135/183 (73.77%), Query Frame = 1 
Query:    1 FVVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVV 549
            FV+LAADA   RSIL+YK ++DKI  ++EN+ +A  GPQ+DC  F EYI KNM L+EL N + L+T  AA +IRGELAKALR+GP+Q  +L+ G  K     +EASLFWMDYLGTLQKV YGAHGY + F LS++D  + KGLT ++A+ ++  CI EL TRF+IA   + +KVV ++G++V+
Sbjct:   55 FVLLAADANAGRSILIYKQDLDKILPISENQIMATVGPQADCSVFGEYIQKNMRLYELENQINLSTFGAANFIRGELAKALRRGPYQVNLLLGGAAK----DEEASLFWMDYLGTLQKVNYGAHGYASNFVLSLLDAHWEKGLTEEQAIEVLRKCIKELETRFMIALPKWSVKVVDSEGVRVI 233
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A7S2XJE8_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.900e-58
Identity = 100/182 (54.95%), Postives = 132/182 (72.53%), Query Frame = 1 
Query:    4 VVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNN-VTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKV 546
            VV+AAD   ARSIL Y+SN+DK+  L+ + A+  AGP SD V FT+YIAKN  L+EL+N+ + L+T A A + RGELA ALRKGPFQ  +L+ G D+        SL+++DY+G +QKVPYG  GY  AF LSVMDR++ KGL   EA++I++ CI EL TRFLI+Q NF+IKV+  DG+KV
Sbjct:   13 VVIAADQSNARSILTYQSNLDKVTELSSHSAMGVAGPNSDLVNFTQYIAKNFKLYELSNDGMQLSTAAQANFCRGELATALRKGPFQVNVLLGGFDEGVGG----SLYFLDYMGAMQKVPYGCQGYAGAFCLSVMDRQWTKGLDEAEAVAIVEKCIQELKTRFLISQPNFMIKVINKDGVKV 190
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: B7FVS5_PHATC (Proteasome subunit beta n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVS5_PHATC)

HSP 1 Score: 192 bits (487), Expect = 1.640e-56
Identity = 94/181 (51.93%), Postives = 131/181 (72.38%), Query Frame = 1 
Query:    4 VVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKV 546
            V+LAAD   ARSILLY++N+DK+  L  + A+  +GP  D V F E++AKN+ L+EL+N++ L+T A A + RGELA ALRKGPFQ   L+ G D    +K  ASL+++DY+  LQKV YG+ GY + F LS+MD+EY   L   +A+ I++ CI+ELHTRFLI+QKNF+IKVV  DG+++
Sbjct:   13 VILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFD----NKVGASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIKVVDKDGVRL 189
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A7S1Y0C9_9STRA (Proteasome subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y0C9_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.270e-56
Identity = 99/183 (54.10%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:    4 VVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVT-LTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVV 549
            VVLA D   ARSI+ Y +N+DKI  L  + A+  +GP  D V FTEYI KN+ L+EL N  T L+T+A A + R ELA ALRKGP+Q  +L+ G D++  S   ASL+++DYL  LQK+ YGA GY + F  S+MD+EY KG T  EAL IID+CINE+HTRFLI Q NF+IKV+  DG++ V
Sbjct:   33 VVLATDQSNARSIVSYLTNLDKIKALTSHSAMGVSGPNCDMVNFTEYIEKNLKLYELRNEGTKLSTRAQANFCRNELAVALRKGPYQVNVLLGGYDEKTSS---ASLYFLDYLAALQKLQYGAQGYASMFCTSIMDKEYRKGCTEAEALKIIDHCINEIHTRFLINQPNFIIKVIDKDGVRTV 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A7S3H6V1_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6V1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 5.230e-56
Identity = 95/183 (51.91%), Postives = 131/183 (71.58%), Query Frame = 1 
Query:    1 FVVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVV 549
            + ++AADA  ARSIL++K + DKI  L  +K L  AG  +DC  F EYI +N+TL+ELNN++ L+T  +A YIRGELA ALRKGP+Q+ +L+AG D    ++D  SL+ MDY+ +L KV +GAHGY A F LSV DR++ KG+ + E L ++  CI+EL TRFLI+Q  F++KVV A G +VV
Sbjct:   12 YAIVAADASAARSILVFKHDEDKIMELDSHKLLVGAGVPADCAHFNEYIQRNLTLYELNNDIKLSTHGSANYIRGELATALRKGPYQSNLLLAGYD----AQDGVSLYHMDYMASLSKVNFGAHGYAANFILSVFDRDWKKGMNLQEGLEVVRRCIHELRTRFLISQPVFILKVVDAAGTRVV 190
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BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A7S1D702_CYCTE (Proteasome subunit beta n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D702_CYCTE)

HSP 1 Score: 190 bits (483), Expect = 7.180e-56
Identity = 96/184 (52.17%), Postives = 135/184 (73.37%), Query Frame = 1 
Query:    4 VVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNN-VTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVVR 552
            VVLA D   ARSIL Y+ N+DKI  L+ + A+  +GP  D V FTEYIAKN+ L+EL+++ + L+T A A + R ELA ALRKGP+Q  IL+ G D +   K+EASL+ +DYLG+L KV +GA GY + F LS+MDR++ + +T  EA++++D+CI E+ TRFL++Q NF+IKVV  DG++VVR
Sbjct:   14 VVLATDQTNARSILTYQHNLDKIKELSSHSAMGVSGPNCDLVNFTEYIAKNIKLYELSHDGMKLSTHAQANFARSELAAALRKGPYQVNILLGGYDTK---KEEASLYTLDYLGSLHKVDFGAQGYASYFCLSIMDRDFDENMTEKEAVAVVDHCIQEIQTRFLLSQPNFIIKVVDKDGVRVVR 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A7S3Q3G3_9STRA (Proteasome subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3G3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.760e-55
Identity = 94/184 (51.09%), Postives = 131/184 (71.20%), Query Frame = 1 
Query:    4 VVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNN-VTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVVR 552
            V+LAAD   ARSIL Y+SN+DKI  L+ + AL  +GP SD V F+EY++KN  L++L+N+ + L+T A A Y R ELA ALRKGP+Q   L+ G D    S  + SL+WMDYL  L KV YG  G+ ++F LS+MDR +++GLT ++A++I+D CI EL  RFLIAQ NF+IKV+  DG++ ++
Sbjct:   13 VILAADQSNARSILTYQSNLDKITQLSSHSALGVSGPNSDLVNFSEYVSKNFALYQLSNDGLPLSTHAQANYCRNELAVALRKGPYQVNCLLGGYDT---SIGKGSLYWMDYLAALSKVNYGCQGHASSFCLSIMDRHWVEGLTQEKAVAIVDKCIKELEVRFLIAQPNFLIKVIDKDGVRTLK 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Match: A0A7S2XZZ5_9STRA (Proteasome subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZZ5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.030e-55
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 1 
Query:    1 FVVLAADAQVARSILLYKSNMDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNN-VTLTTKAAATYIRGELAKALRKGPFQTQILMAGVDKRAESKDEAS-----LFWMDYLGTLQKVPYGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNFVIKVVTADGIKVV 549
            FV++AADA   RSIL++K + DK+  +  NK L  AGPQ+DC  F+EYI KNM L+ LNNN +TL T AAA +IRGE+A ALR+GP+Q  +L+ GVD  A+   ++      LF++DYL +   V +G HGYG++F LS++DR + + LT +EA+ I+  CI+EL  RFLI+Q  F IK+VTADG K V
Sbjct:   12 FVLVAADAMSGRSILIFKDDYDKVKEMDPNKLLGLAGPQADCENFSEYIQKNMELYRLNNNGLTLGTHAAANFIRGEMAYALRRGPYQCNMLLGGVDPPAKGSTDSEPAKPQLFFIDYLASCHPVNFGCHGYGSSFLLSILDRCWKEDLTQEEAIDIVKKCIHELEVRFLISQPKFTIKIVTADGTKKV 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8892.20628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF06_ECTSI2.110e-12186.12Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CPT6_9STRA8.180e-6962.50Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A6U4C0Y9_9STRA7.450e-6254.64Proteasome subunit beta n=2 Tax=Phaeomonas parva T... [more]
A0A7S2XJE8_9STRA1.900e-5854.95Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]
B7FVS5_PHATC1.640e-5651.93Proteasome subunit beta n=2 Tax=Phaeodactylum tric... [more]
A0A7S1Y0C9_9STRA3.270e-5654.10Proteasome subunit beta n=1 Tax=Grammatophora ocea... [more]
A0A7S3H6V1_9STRA5.230e-5651.91Proteasome subunit beta n=1 Tax=Spumella elongata ... [more]
A0A7S1D702_CYCTE7.180e-5652.17Proteasome subunit beta n=1 Tax=Cyclophora tenuis ... [more]
A0A7S3Q3G3_9STRA2.760e-5551.09Proteasome subunit beta n=1 Tax=Chaetoceros debili... [more]
A0A7S2XZZ5_9STRA8.030e-5550.79Proteasome subunit beta n=1 Tax=Fibrocapsa japonic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8892contigM-pyrifera_M_contig8892:1548..8470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.6
Seed ortholog evalue7.5e-87
Seed eggNOG ortholog2880.D8LF06
Preferred namePSMB2
KEGG koko:K02734,ko:K08471,ko:K12847,ko:K18626
KEGG Pathwayko03040,ko03050,map03040,map03050
KEGG ModuleM00337,M00340,M00354
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0003674,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0014070,GO:0016020,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0080090,GO:0090068,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0177@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-21_006230.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04030,ko04812
Exons4
Model size1078
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8892.20628.1prot_M-pyrifera_M_contig8892.20628.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8892 1608..8022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.0977159-UTR-M-pyrifera_M_contig8892:1547..16071622816799.0977159-UTR-M-pyrifera_M_contig8892:1547..1607Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8892 1548..1607 +
1692278185.4585228-UTR-M-pyrifera_M_contig8892:1547..16071692278185.4585228-UTR-M-pyrifera_M_contig8892:1547..1607Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8892 1548..1607 +
1622816799.1561882-UTR-M-pyrifera_M_contig8892:8022..84701622816799.1561882-UTR-M-pyrifera_M_contig8892:8022..8470Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8892 8023..8470 +
1692278185.5272412-UTR-M-pyrifera_M_contig8892:8022..84701692278185.5272412-UTR-M-pyrifera_M_contig8892:8022..8470Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8892 8023..8470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.1108537-CDS-M-pyrifera_M_contig8892:1607..17751622816799.1108537-CDS-M-pyrifera_M_contig8892:1607..1775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 1608..1775 +
1692278185.4740403-CDS-M-pyrifera_M_contig8892:1607..17751692278185.4740403-CDS-M-pyrifera_M_contig8892:1607..1775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 1608..1775 +
1622816799.1242101-CDS-M-pyrifera_M_contig8892:3694..38201622816799.1242101-CDS-M-pyrifera_M_contig8892:3694..3820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 3695..3820 +
1692278185.4914057-CDS-M-pyrifera_M_contig8892:3694..38201692278185.4914057-CDS-M-pyrifera_M_contig8892:3694..3820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 3695..3820 +
1622816799.1351936-CDS-M-pyrifera_M_contig8892:4761..49261622816799.1351936-CDS-M-pyrifera_M_contig8892:4761..4926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 4762..4926 +
1692278185.5060604-CDS-M-pyrifera_M_contig8892:4761..49261692278185.5060604-CDS-M-pyrifera_M_contig8892:4761..4926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 4762..4926 +
1622816799.1458101-CDS-M-pyrifera_M_contig8892:7911..80221622816799.1458101-CDS-M-pyrifera_M_contig8892:7911..8022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 7912..8022 +
1692278185.5166564-CDS-M-pyrifera_M_contig8892:7911..80221692278185.5166564-CDS-M-pyrifera_M_contig8892:7911..8022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8892 7912..8022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8892.20628.1

>prot_M-pyrifera_M_contig8892.20628.1 ID=prot_M-pyrifera_M_contig8892.20628.1|Name=mRNA_M-pyrifera_M_contig8892.20628.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
MDKIGHLAENKALACAGPQSDCVAFTEYIAKNMTLHELNNNVTLTTKAAA
TYIRGELAKALRKGPFQTQILMAGVDKRAESKDEASLFWMDYLGTLQKVP
YGAHGYGAAFTLSVMDREYIKGLTVDEALSIIDNCINELHTRFLIAQKNF
VIKVVTADGIKVVRGPPKPDMGAAGAGEDMEDAAVPVQG*
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mRNA from alignment at M-pyrifera_M_contig8892:1548..8470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8892.20628.1 ID=mRNA_M-pyrifera_M_contig8892.20628.1|Name=mRNA_M-pyrifera_M_contig8892.20628.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6923bp|location=Sequence derived from alignment at M-pyrifera_M_contig8892:1548..8470+ (Macrocystis pyrifera P11B4 male)
TTTGTGGTGCTAGCGGCGGACGCGCAGGTAGCGCGTTCAATCCTCCTGTA
CAAGAGCAACATGGACAAGATCGGCCACCTGGCGGAAAACAAGGCGCTGG
CTTGCGCGGGGCCTCAGTCCGACTGCGTGGCGTTCACGGAGTACATCGCC
AAAAACATGACCCTCCACGAGCTGAACAACAACGTCACGCTCACCACGAA
GGCGGCGGCCACCTACATCCGGGGCGAGGTGAGATATGTGTCATGTTATG
CGGTGCGACTGGCGGAGAGATGCGTTGTTCTAGAATCGCTGATTATGTGT
GTTGTTTCGAGCCGTTGGATACATGCGTTGTTTAGAGCCGGTACATCCGG
GGCGAGGTGAGATAGATGCCATGCGATGCGGTGCGACTGGCGGCGCGATG
CGCTGTTTTGGAGCCGTTGGTTATTTGCGTTTGTTCTGAGCCGTTGGTTA
TTCACGTTTCTTTAGAGCCGTTGATAATATGCGTTGTTGATAGCCGTTAG
TTTTAGCATGAGTTTTTTGGAGCCGTGGATTCAGCGGTGGTTTAGAACCG
TTGATTATACCGTATCCGTTGTGCTGCTTAGAGCCGTACCTGAAGAAGGC
CGTGTTGAGAGCAACAGGGGCAGAAAAAAAGCCTCAATATGGTCCGCCTG
CAACTTACCACGTAATATACTACTGTTATCGTTGTATGTTTGCACCAGCC
AGCCGGGCTGAAGGTACGCCGCTTGTCCGCATGTGGACCCACAACGACGA
GCAACAACCCCAGTTGAATCTGTTGCGATGGTTGTGCCTGTTCCCTTTTC
CTTGGTGGCAAATATGTTGCGATGGTTGACGGGACTCTTACCCCTCGCCA
ATCATCTAGTACGGGATGCGATAGCACTCAGAACCCACGCTCGAACCCAA
TACCGTATGTCCCCGTACCTTTCTGATTACTACGACGGTGTACAAAATCC
CGAAAGACGTTGAAGGTTGTCAAAACTACTGTAAACCGTCAACCGTGTTT
TTTTTTTCGGTAGCTGCTACTGCTGCACGCACATGATACGTATAGCTGTT
TTACCGCACCGCTCTCCCATTTTTGGGGACAAAACAGTTGCAATTGGACC
CAGTTGGGACAAACTTGGGAGTTGTAAAGAGTTGTACAGGGCTTAAAACT
TGATGGTGTCACGCCCCTTGATTGTGTCGTTTTTTTCGATGGTGTCATTT
CCCGATCCCGCGGGTTTCAGCTGGCTAAGGCGTTCGCAAGGTACCCGCCC
TTGCAGACTTGGCGGCCATATAACCACGGCCGATGATGTATGATATGGTA
ACATTTGGTTGAATTATCTGTCTCACCCCCCCCTTGGTGGTGTTGGTCGT
TTCGCTTCTGATGGTGACGTTTCCCTCTTCAGATGGTGCCGTTTTCCTTC
TGATATTTGATATTTGATATTTGATAGTATCGTTTTCCTAATGATGGTGT
CGTTTCGTTTCCCTTTGAATGCTGTCGTTTGTCTTATGATGGTGTCGTTT
CCCATTTGGAGCCATCCCACAGTAGGGGTGTTCCCGACGTTCCTGAGCCC
CTCACATTAGGAACTCAATATCTCACCTGATACAATACTTGGAAGAAATT
CGTGAGGGCCATCCGACCGGCACTTGTATGCGCTAGTCCTAAAAATATAC
GAGTAAAATTTTCATCCTAACTGGTAGTTCCCCACTTAGGGAACTCAATT
GGTCAGAAACCTTTCGCCCAAAAAGTGCAGCCCCTACCGTGGGGTGACTC
TTTGATGGTGTCGTTTCCAATTTGATGGTGTCGTTTCCCTTATGATGCTG
TCGTTTCTCTTGTGATGCTGTCGTTTCACTGTAGACGGTGCCGTTTCCCG
TATGATGTTGTCGTTTCCCTTCTGATATTGTCGTTCCCCTTCTGATGGTG
TCGCTTCCCTTATGATGCTGTCGTTTCCCCTTTAATAGCGCCGCTTCCCT
TTGATCGGCGCCCTTTCCTTTTTTGATGGTGTCGTTTCGCTTTTGATGGT
GTCGTTTCCCTTTGATTGGCGCCGTTTCATTATTTGATGGTGTCGTTTCG
CTTTTTTTAATTCCCTTTTTTGATGATGTCATTTCCCTTTTTAAATGATG
TCATTTCCCTTGTGACGGTGTCGTGTTTCCTCTCCCGCCGGTGACAGCTG
GCAAAGGCGCTTCGCAAGGGTCCCTTTCAGACCCAGATTTTGATGGCGGG
CGTGGACAAGCGAGCAGAGAGTAAGGATGAAGCATCCTTATTCTGGATGG
ACTACCTAGGGACACTGCAGAAGGTCAGAGATGGATGGAATGGCCGCGGA
ATTTGTTTGTAGTTGATTCGGTGTTGTGTTATCCATCACCATGTCCGAAA
AATGTAAGATAGCTGTGCGAAGGTTACTCCCTCACGGTGGCTGGCAACCC
CTTCGCTGCTGCAAAACTTATGGTCACTCTAGAACAATTCTTAACATTTT
CCCGTCGAAAAGCGGATGCAACTCATCAAACCATTTTTAACTACTAACAC
TGCAAGACTTGAACCCAATTTTTTTCGCTGTTCGATAGCTTGTTTCCCTA
AGCGAACCGTGCTACGGCCGTTCGGGGTATTTTTGAGCGAAACTAAACTC
ACCGAACGGAACTAAACTGACCGACGGAGCTACCCCATGTAACATTAAAA
ACAAGTTCCGTCACATCACATGACCCACCCCCTTTTGGATTGGGGGTGTG
CCGCCAGTCGGTGAGGTTCATAGGAGAGGCGTGCCTGATGTGGGGGAAAG
GGGGGGGCAGCGTTCGTTTGTGGTGACATAACCAAAGCCAACATACGTTC
ACCCGACGTACAAAAATGTTCATCGTCACTAACCACTGCGGCATGATTTT
TTTTGTTTTTGTTTCGTGCAATGTGTTCATTGTCGCCCACCCCTTTTTTG
TTTTTGCCATTCGTTTCATGTGCAGGTTGGGTTTTATAAAATATATTTTG
ATAATCACCCACCTCCTTGCTTCTGATATTTTTTAATACAATATTTTCAT
GATCGCTCACCCCTTGCTTTTGTTGTTTTCACGTTGGCATGATTCCACTG
GTACACGTCTCGATCGTCATCCATTCGCCCTTGGGTGTGCTATTTTTTTC
ACGGGCAGGTTCCCACCCGTTTTTGTTATTATATTCTTCAAGTGGACAGA
TTTGTACCATACAATATTTTCATCATCACCCACCGTTGATTTTGTCATTT
TTTTTCATGGGCAGGTACCATACGGTGCGCATGGGTACGGCGCGGCGTTC
ACCCTCTCCGTCATGGACCGGGAATACATCAAGGGGCTCACGGTGGACGA
AGCTTTGTCGATCATCGACAACTGCATCAACGAACTGCACACACGCTTCC
TCATCGCGCAAAAGAACTTCGTCATCAAGGTAAACAGTCGTGCCCCCTCT
ATTACGGGGGACCATAGTAAATAGGACCTACGGTACACACAAAAACCTAT
ATGTTTCCCTATTTTTACTCACAAGATGTGGTCCTATTTATCATGGCCCC
CCGTACGAGTAGTATATATGGGGTTGGGTGCCATTGTAGTCCCGGTCGCC
CGCCATAGTGCCTATGGAATCGCTTGGTACAGGGTACAGGTGGGTTTCAC
CAGTGTAGCACAGCAGTAGTGTGCGGAGTAAATAGTGCCGGCTGCCCGCT
TATGAAGTGCCTGTGAAATGGCTTGGCACTTGGCACAGATGAGATACAAC
CAGTGCGGCAGTGTCCGGAGTAAATAGTGCCGGTTGGTGACACAGATAGA
TAGTGCCGGTTGGTGCCACATTTAGTGCCGGTTGGTGCCACAGATAGTGC
CGGTTGGTGCCACATTTAGTGCCGGTTGGTGACACAGATAGATAGTGCCG
GTTGGTGTCACATTTAGTGCCGGTTGGTGCCACAGTTAGTGCCGGTTGGT
GCCACATTTAGTGCCGGTTGGTGCCACAGATAGTGCCGGTTGGTGCCGCA
GTTAGTGCCGGTTGGTGCCACAGTTAGTGCCGGTTGTGTTGCCTGGCGCA
TACTACTGACTATTAATATTAATAGATACCGGCACTATCCAGGGACCATT
ACTGCTGCTGTACCTGGTATTGTTTAGCTGAACCCTGTGTACGCGCGATA
AAATGAAGGCGTGTGCGTACCGGGGGGGAAGAACTTCGGCCGGAAACGTA
TATATATATATATACCAGGTATGTATATATATCGTATACCCGGTGGCTTG
GTAGGTGGTCCGCGTGCCCATCAAGATCACTTTCGTGCGTTCGAGTCTCA
CCGAGTGCATGCTCGGAGGGACTTTTTCTTGCATAAAAATTGATCAGCGG
AAAGCGCGAGAGCGTGAGTTAGGTACATTCGATGAAAATCGACGAGCAGC
GGGAATGCTGAACCCTCTGCGCGAAAAAAATAAATAAAGGCACGTACCGG
GGGGGGAGAAGGGTCGACACCTGTGACCACGGCTTGTCCAGAAGATCGCT
GAGGGTAAAACCTCCTACGAGTTAAGGTGGAAAAGTAAAAGTGATGATTA
ATATATATGTATCATATATCATCATGCAGCTGAATCCTACGTATGCACGA
TAGTGATGAAGGCATACCTTCGTGCCACTAATTCCCCGTGTTTTAAGGAC
CTTTTGGAGTAAAAAAATCATGCAAACCTTAACTTTCCTTTTATTGAGGG
GGACATAGTGGTATTGCTCATGTACCGGGAGAGGGGAGGACATGACGTCT
GTCCAAAACGATGTCGGGTTCGTGTATAAGTTATAACATGTTGAGGCCTT
AAGGATGCCCTTAAGGAGGCGTTTAGGACTGCACTTCCGTTGTGGGGACC
TTTTACTTGGAATTAGTGTAGGATTTTGGTTTATGGACACTGCACTACAG
TAGTAAAACGGTCTAGCTTATGCGCGATAAAAAAATTAAGACCTGGGAAT
GGATTCGTTTAGTACGTTAAAAGAAAACAAAACAATGTCGCATGGTCGAG
ATCTTGGGAAAAAGGTCTGTAGGAGACCAACAAATCCGTGACGGGGAAAA
AAAAACCTTTGTCACCATATAATCCGTTGGAGGATGCTGCGTCTCAAAAA
TAAAATAAAAGGCTGTGCGGGCGTGTAGACGTTGCGGCGTTGAGCTACGA
GCTGAAAAAAAGTCAGCCTCGCTTTTTGCACGAAACGTGCTGCTGGACAG
CGCACGATCAAGCCCAGAGTGTAGAGCATCGGCGTCGACACGGATGCGCG
AGCGTGAATGAATCGCACGTTTCTGGTGGCGCCTTGGGATTGGTGGCGGC
AGCACGAGAATGCTGCCCCCCCTGTGAAACACATCTTTTACAGATTACGT
CGCAGGCTATGTGGTCCTGGTTTTCTGCTGTTGGGCACGTGTAAACAACA
AGAACATACCCACACACAGCATCGACAATCCACAGCGTGTTGCTATCTAT
ACTGCACTACGCCGAGACCGGGATTTCGACGGCACTGCCTGGACCTCCGT
GGAAGCGCGCCCCACCTCTAGCTCGCAGACAAGTTGTTGTTGTGCGTGCA
GCTGGGCTTGAGCCTTGCGGCCAAGGCTGCATGCACCACGCGCCTAAAGT
TCTGCATGGTGCTGCTGTATGTGCTCGTACGTACCCACCACTTTGTCCGG
ACATGTAAGGAACCGTTTATTTATATTCATTTTTATATTTGAACGGTCCC
TATATTTCCGGACAGGGTAGTACGGCAAGAGTATTTTTACCCGATTGTAC
AGTAGGCCGAATCCGAACCATCCTGTGGCAGCAGTGGCATATCAACATAT
TAACCGAATGCAGTTTATTTGACGCGGCGGCAGTGGGTGACCCAAGCTAA
TATTTAAAGTACTCGTACAATAACTCAAATCCATTGTTGAAATTGTTTTT
GCCCCTTCCCTCCGAATGCCAATGCTCCGTCTCGAGAGGGAGGCGTTGTC
AATGGTCAAATGACTAGGGCAAGCAACACATGATTGCGCCCCCCCCCCCC
TCGAATGTAAAGCCGACTGTAATGCCGAATGCACTACCGAATGCACTGAA
TTCACGAGCTGTTTACCAGGATATTTTTTATTACTATTAATAGAATTGTG
TGGATCGGGATGACTCGGATGATTTGAGTTTTGTGAAGAATTGTGATACT
CATAGACGGTGTACAGTGAATCGAAATCGTTGTTTGAGTCTGTTGGGGTA
GATATCATAGATAGCCGAGCGTGGCATGGTGAATACCACAATTTATAGTG
TAGTCCTATGATGCATTCGCCGCCAGGCTCAGCCTTCATGTCTGGTGGAC
GACCGAGCGTTTCGTGGTAAATTCCACAATTTATCATTCCTATGATTGAT
ACGATACCCCGCCACGTTCAGCCGCTAAGCAATACCCCCTCCTTCGTGGT
ATAAAACACGCCAGGTGGTCACGGCAGACGGTATCAAGGTTGTCCGAGGC
CCACCGAAGCCCGACATGGGGGCAGCAGGAGCGGGCGAAGATATGGAAGA
TGCGGCTGTTCCCGTACAAGGATAAATGCACAAGGGTTACTGGTCCTTTG
TTCAGGAGTAGCGCCTTTTATTTTGGAGGGGAGGGTGGCAGAGCGGAAGT
TTGTGGCGCTGCTCAGGAAGCGTCGGAAACTCTTCACGAGTGCTTAGGAC
GCGACGATTGAGCGGCATTAAGCCCCCCACAAAGAGATGTCAAGTCAAGT
CAAAGTCACCACCATTTTCTGGTAGCATATTCGACGGTGATGGTATCTCT
GGTATGATACAACCCTGCTGTACAAAAAGAGCGCTGTGTGCCTATCTGGG
CGACAAACTTGAGGACGATTTTGCAGTGGCCCACCTACACCCGTCCACCC
GTGTCGACATGACGGCGAGGAAGCCTTATACACGAGTCGCGTGTCTCACG
TGGACACTTGCGGCGGCGTTGTTTGTCCATTATCTGGGCGCAAAATGATG
GATTATGGATACCATTTGTTTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8892:1548..8470+

>mRNA_M-pyrifera_M_contig8892.20628.1 ID=mRNA_M-pyrifera_M_contig8892.20628.1|Name=mRNA_M-pyrifera_M_contig8892.20628.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig8892:1548..8470+ (Macrocystis pyrifera P11B4 male)
ATGGACAAGATCGGCCACCTGGCGGAAAACAAGGCGCTGGCTTGCGCGGG
GCCTCAGTCCGACTGCGTGGCGTTCACGGAGTACATCGCCAAAAACATGA
CCCTCCACGAGCTGAACAACAACGTCACGCTCACCACGAAGGCGGCGGCC
ACCTACATCCGGGGCGAGATGGACAAGATCGGCCACCTGGCGGAAAACAA
GGCGCTGGCTTGCGCGGGGCCTCAGTCCGACTGCGTGGCGTTCACGGAGT
ACATCGCCAAAAACATGACCCTCCACGAGCTGAACAACAACGTCACGCTC
ACCACGAAGGCGGCGGCCACCTACATCCGGGGCGAGCTGGCAAAGGCGCT
TCGCAAGGGTCCCTTTCAGACCCAGATTTTGATGGCGGGCGTGGACAAGC
GAGCAGAGAGTAAGGATGAAGCATCCTTATTCTGGATGGACTACCTAGGG
ACACTGCAGAAGCTGGCAAAGGCGCTTCGCAAGGGTCCCTTTCAGACCCA
GATTTTGATGGCGGGCGTGGACAAGCGAGCAGAGAGTAAGGATGAAGCAT
CCTTATTCTGGATGGACTACCTAGGGACACTGCAGAAGGTACCATACGGT
GCGCATGGGTACGGCGCGGCGTTCACCCTCTCCGTCATGGACCGGGAATA
CATCAAGGGGCTCACGGTGGACGAAGCTTTGTCGATCATCGACAACTGCA
TCAACGAACTGCACACACGCTTCCTCATCGCGCAAAAGAACTTCGTCATC
AAGGTACCATACGGTGCGCATGGGTACGGCGCGGCGTTCACCCTCTCCGT
CATGGACCGGGAATACATCAAGGGGCTCACGGTGGACGAAGCTTTGTCGA
TCATCGACAACTGCATCAACGAACTGCACACACGCTTCCTCATCGCGCAA
AAGAACTTCGTCATCAAGGTGGTCACGGCAGACGGTATCAAGGTTGTCCG
AGGCCCACCGAAGCCCGACATGGGGGCAGCAGGAGCGGGCGAAGATATGG
AAGATGCGGCTGTTCCCGTACAAGGATAAGTGGTCACGGCAGACGGTATC
AAGGTTGTCCGAGGCCCACCGAAGCCCGACATGGGGGCAGCAGGAGCGGG
CGAAGATATGGAAGATGCGGCTGTTCCCGTACAAGGATAA
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