mRNA_M-pyrifera_M_contig88919.20627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88919.20627.1
Unique NamemRNA_M-pyrifera_M_contig88919.20627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: A0A7S0Y4B7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4B7_HEMAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.880e-17
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   37 GPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLRCR 456
            GP  GG+ + V G + G     K    V++G + C    + S + ++C+VPRG+GA LPVTVG      ++ +G F+Y+PPR+D  +P N P  GG +V + G N G    H     T ++    C E+  VS   + CR
Sbjct:  104 GPWYGGWWLAVYGSNLGA--GQKDVGSVRVGDVECKKSVWLSASSVACMVPRGMGAALPVTVGLKAGAATV-EGKFSYNPPRIDSYHPRNGPPRGGHWVTITGQNFG----HVDTSPTVYLAGRVCLESYWVSDRKVLCR 236          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: A0A7S1DMC6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMC6_HEMAN)

HSP 1 Score: 80.5 bits (197), Expect = 3.350e-16
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  118 VKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLRCR 456
            V++G + C    + S + ++C+VPRG+GA LPVTVG      ++ +G F+Y+PPR+D  +P N P  GG +V + G N G    H     T ++    C E+  VS   + CR
Sbjct:    6 VRVGDVECKKSVWLSASSVACMVPRGMGAALPVTVGLKAGAATV-EGKFSYNPPRIDSYHPRNGPPRGGHWVTITGQNFG----HVDTSPTVYLAGRVCLESYWVSDRKVLCR 113          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: A0A7S0YIS8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YIS8_9CRYP)

HSP 1 Score: 80.9 bits (198), Expect = 2.530e-15
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   37 GPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLRCR 456
            GP  GG+ + V GK+ G  +       V++G + C    + S + ++C+VPRG+GA LPVTVG      ++ +G F+Y  PR+D  +P N P  GG +V V G + G    H     T ++    C E+  VS   + CR
Sbjct:  124 GPWYGGWWVAVYGKNLGSGQADVGS--VRVGDVECKKSVWLSASSVACMVPRGMGAGLPVTVGLKAGAATV-EGKFSYSAPRIDSYHPRNGPPRGGHWVTVTGAHFG----HVDTRPTVYLAGRVCLESYWVSDRKVLCR 256          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: A0A7S0VPF5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPF5_9CRYP)

HSP 1 Score: 75.1 bits (183), Expect = 7.000e-13
Identity = 49/141 (34.75%), Postives = 71/141 (50.35%), Query Frame = 1
Query:    1 AGPEVFSVSPSHGPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISF-ASDTQLSCVVPRGLG-ADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCT 417
            AGP + +V+PS GPA GGF I V G   G+V      + V++G + C  I   AS T +   VP G+G A + VT     + T    G F Y+PP V R++P+  P+ GG  + + G N G         ++   G  PC+
Sbjct:  429 AGPSITTVTPSKGPAVGGFTITVIGT--GLVGALPGHVSVRMGGVECTGIGLVASGTGVEFSVPPGVGFATIEVT---RDQVTGAAHGAFRYEPPTVSRVDPSTAPAAGGVQLTITGQNFGRPEDGAEASLSGRDGAGPCS 564          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: L1K274_GUITC (PDZ domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K274_GUITC)

HSP 1 Score: 71.6 bits (174), Expect = 1.240e-11
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 1
Query:   10 EVFSVSPSHGPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLRCR 456
            +V     + GP  GG+R++V GK+ G  +  +    + +G++ C    + S +  +C+VPRG+G +LPVTV       ++ +G F+Y+ P ++  +P N     G +V + G N G    H      A++    C ET  +S + + CR
Sbjct:  568 KVNPTGSAMGPWYGGWRMLVYGKNLG--KSAEDLDVILVGNVTCKRSVWLSSSSSACMVPRGMGWNLPVTVDLKASSATL-EGKFSYEAPVIESYHPRNGAPRAGFWVTITGRNFG----HVDTQPVAYLAGRVCLETYWISDSRVLCR 709          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: L1K3N4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3N4_GUITC)

HSP 1 Score: 70.9 bits (172), Expect = 2.420e-11
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    7 PEVFSVSPSHGPARGGFR---IVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGN 366
            P + S+ PS+ PA GG     +V+ G +FG      S + V IG+     +S A D+ + C +P G GA L V V  SG  T++ +  F+YDPP V  +NPNN P T G    V G N G  N
Sbjct:   24 PVITSIRPSNMPAVGGGDTTFLVIGGSNFGFTT---SNIMVGIGTSFSSEVSNAVDSLVICKIPAGTGAGLDVFVNVSGAVTTLLKS-FSYDPPIVTSLNPNNVP-TAGSTSRVLGKNFGVAN 141          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: A0A6T7TMM8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A6T7TMM8_9CRYP)

HSP 1 Score: 67.8 bits (164), Expect = 2.720e-10
Identity = 43/140 (30.71%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   37 GPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLRCR 456
            GP  GG+ +VV GK+ G  R       + +G+  C    + S +  +C+VPRG+G +LPVTV       ++ +G F+Y+ P ++  +P N     G +V + G N G    H      A++    C ET  +S + + CR
Sbjct:  581 GPWYGGWWMVVYGKNLG--RSAGDLDLILVGNATCKRSVWLSSSSSACMVPRGMGWNLPVTVDLKTSSATL-EGRFSYEAPVIESYHPRNGAPRAGFWVTISGRNFG----HVDTRPVAYLAGRVCLETYWISDSRVLCR 713          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: D3B798_POLPP (Uncharacterized protein n=2 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B798_POLPP)

HSP 1 Score: 63.9 bits (154), Expect = 6.270e-9
Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 1
Query:    7 PEVFSVSPSHGPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINPN----NRPSTGGQFVDVYGDNLGEGNGHGWPLIT-AFIGPTPCTETQRVSRNHLRCRV 459
            P + S+SP  G   G +++ ++GK F   ++ +    V   +L   +I  +SD  ++  VP G G D+P+TV   G  TS     F+Y+PP +  I PN    N+PS+    V + G NLG     G  L+T   IG   C+  Q  S   + C +
Sbjct: 3576 PTIDSISPESGSVDGNYQLDISGKFF---KNGEISPTVNF-NLQAATIVSSSDNSITITVPSGGGKDIPITVSV-GSQTSNTNTDFSYNPPSITLITPNQGKYNQPSS----VVISGSNLGL---PGQSLLTHILIGAVSCSNIQVQSSQSVSCTI 3719          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: UPI0018950A9F (IPT/TIG domain-containing protein n=1 Tax=Nocardia amamiensis TaxID=404578 RepID=UPI0018950A9F)

HSP 1 Score: 58.9 bits (141), Expect = 3.350e-7
Identity = 51/150 (34.00%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    7 PEVFSVSPSHGPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQG-GFTYDP-PRVDRINPNNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLR 450
            P + SV+P  GP  GG   ++TG  F           V  G     S +  SDT+LS VVP G+G+ + VTV  +G    I  G  +TY P P V  I P++ P TGG  V + G   G              G TP T    VS   +R
Sbjct: 1077 PTLASVAPDSGPETGGNTAILTGTGFA------GTTVVNFGXXAAVSFTVVSDTELSAVVPAGIGS-VNVTVTTAG---GISNGVPYTYVPAPTVATIVPDSGPETGGNTVVLPGTGFGT-------ATAVNFGVTPATSFTVVSGAEIR 1209          
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Match: UPI001D14BAED (IPT/TIG domain-containing protein n=1 Tax=Nocardia sp. DSM 111727 TaxID=2887191 RepID=UPI001D14BAED)

HSP 1 Score: 57.8 bits (138), Expect = 7.440e-7
Identity = 42/119 (35.29%), Postives = 55/119 (46.22%), Query Frame = 1
Query:    7 PEVFSVSPSHGPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSISFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYD---PPRVDRINPNNRPSTGGQFVDVYGDNL 354
            P + SVSP+ GPA GG  +V+TG +   V        V  G +   S +  S TQ++ VVP G+G  L   VG  G        G  YD    P +  I+P   P  GG  V + G NL
Sbjct:  330 PSLVSVSPASGPAAGGNTVVLTGANLTGVTA------VLFGGVAASSFTVNSGTQITAVVPAGVGTVLVTVVGPGGT-----SNGVLYDYIAVPALILISPTAGPLAGGTTVTLIGTNL 437          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88919.20627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S0Y4B7_HEMAN3.880e-1735.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1DMC6_HEMAN3.350e-1636.28Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0YIS8_9CRYP2.530e-1534.29Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VPF5_9CRYP7.000e-1334.75Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1K274_GUITC1.240e-1128.86PDZ domain-containing protein n=1 Tax=Guillardia t... [more]
L1K3N4_GUITC2.420e-1139.02Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6T7TMM8_9CRYP2.720e-1030.71Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
D3B798_POLPP6.270e-931.41Uncharacterized protein n=2 Tax=Polysphondylium pa... [more]
UPI0018950A9F3.350e-734.00IPT/TIG domain-containing protein n=1 Tax=Nocardia... [more]
UPI001D14BAED7.440e-735.29IPT/TIG domain-containing protein n=1 Tax=Nocardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88919contigM-pyrifera_M_contig88919:2..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue8.1e-15
Seed eggNOG ortholog55529.EKX33094
Hectar predicted targeting categoryother localisation
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.0489426-CDS-M-pyrifera_M_contig88919:1..1861622816799.0489426-CDS-M-pyrifera_M_contig88919:1..186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88919 2..186 -
1692278185.4354372-CDS-M-pyrifera_M_contig88919:1..1861692278185.4354372-CDS-M-pyrifera_M_contig88919:1..186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88919 2..186 -
1622816799.0596113-CDS-M-pyrifera_M_contig88919:258..5321622816799.0596113-CDS-M-pyrifera_M_contig88919:258..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88919 259..532 -
1692278185.4469652-CDS-M-pyrifera_M_contig88919:258..5321692278185.4469652-CDS-M-pyrifera_M_contig88919:258..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88919 259..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88919.20627.1prot_M-pyrifera_M_contig88919.20627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88919 2..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88919.20627.1

>prot_M-pyrifera_M_contig88919.20627.1 ID=prot_M-pyrifera_M_contig88919.20627.1|Name=mRNA_M-pyrifera_M_contig88919.20627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
AGPEVFSVSPSHGPARGGFRIVVTGKHFGVVRDPKSRLYVKIGSLGCGSI
SFASDTQLSCVVPRGLGADLPVTVGFSGRPTSIRQGGFTYDPPRVDRINP
NNRPSTGGQFVDVYGDNLGEGNGHGWPLITAFIGPTPCTETQRVSRNHLR
CRV
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mRNA from alignment at M-pyrifera_M_contig88919:2..532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88919.20627.1 ID=mRNA_M-pyrifera_M_contig88919.20627.1|Name=mRNA_M-pyrifera_M_contig88919.20627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig88919:2..532- (Macrocystis pyrifera P11B4 male)
GCAGGCCCAGAAGTGTTCTCCGTGTCACCGTCGCACGGACCTGCCCGTGG CGGCTTCCGCATTGTGGTGACAGGCAAGCACTTCGGAGTGGTTCGTGACC CCAAGTCCAGGCTGTACGTCAAGATCGGCAGCCTGGGCTGTGGCTCAATC TCTTTTGCCTCCGACACTCAGCTCTCTTGTGTCGTGCCTCGCGGATTGGG AGCTGACCTTCCGGTCACTGTTGGGTTCTCTGGCAGGCCAACCAGCATTC GGCAGGGCGGGTTCACGTATGACCGTGAGTACTGTGCCGTCGTGTGTCTG CGCGCGTGCTGTGAGCCTGTCTGACTCGCTCCCACCCTTGCTGCAGCACC ACGAGTGGACCGCATCAACCCCAACAACCGTCCGTCTACGGGTGGCCAGT TTGTGGACGTGTACGGTGACAACTTGGGCGAGGGCAACGGGCACGGCTGG CCGCTCATCACCGCATTCATTGGACCCACCCCGTGCACTGAAACGCAGCG TGTGTCCCGCAACCACCTACGGTGCCGCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88919:2..532-

>mRNA_M-pyrifera_M_contig88919.20627.1 ID=mRNA_M-pyrifera_M_contig88919.20627.1|Name=mRNA_M-pyrifera_M_contig88919.20627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig88919:2..532- (Macrocystis pyrifera P11B4 male)
GCAGGCCCAGAAGTGTTCTCCGTGTCACCGTCGCACGGACCTGCCCGTGG
CGGCTTCCGCATTGTGGTGACAGGCAAGCACTTCGGAGTGGTTCGTGACC
CCAAGTCCAGGCTGTACGTCAAGATCGGCAGCCTGGGCTGTGGCTCAATC
TCTTTTGCCTCCGACACTCAGCTCTCTTGTGTCGTGCCTCGCGGATTGGG
AGCTGACCTTCCGGTCACTGTTGGGTTCTCTGGCAGGCCAACCAGCATTC
GGCAGGGCGGGTTCACGTATGACCGCAGGCCCAGAAGTGTTCTCCGTGTC
ACCGTCGCACGGACCTGCCCGTGGCGGCTTCCGCATTGTGGTGACAGGCA
AGCACTTCGGAGTGGTTCGTGACCCCAAGTCCAGGCTGTACGTCAAGATC
GGCAGCCTGGGCTGTGGCTCAATCTCTTTTGCCTCCGACACTCAGCTCTC
TTGTGTCGTGCCTCGCGGATTGGGAGCTGACCTTCCGGTCACTGTTGGGT
TCTCTGGCAGGCCAACCAGCATTCGGCAGGGCGGGTTCACGTATGACCCA
CCACGAGTGGACCGCATCAACCCCAACAACCGTCCGTCTACGGGTGGCCA
GTTTGTGGACGTGTACGGTGACAACTTGGGCGAGGGCAACGGGCACGGCT
GGCCGCTCATCACCGCATTCATTGGACCCACCCCGTGCACTGAAACGCAG
CGTGTGTCCCGCAACCACCTACGGTGCCGCGTGCACCACGAGTGGACCGC
ATCAACCCCAACAACCGTCCGTCTACGGGTGGCCAGTTTGTGGACGTGTA
CGGTGACAACTTGGGCGAGGGCAACGGGCACGGCTGGCCGCTCATCACCG
CATTCATTGGACCCACCCCGTGCACTGAAACGCAGCGTGTGTCCCGCAAC
CACCTACGGTGCCGCGTG
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