mRNA_M-pyrifera_M_contig88881.20623.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88881.20623.1
Unique NamemRNA_M-pyrifera_M_contig88881.20623.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: D7G4C2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.640e-25
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1
Query:   19 VTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            +T  QL GGEGNLLASAVVT+YATFLCFSAVSKTPTS CNPFVGESN TVVLIG+ LT+LSL W
Sbjct:  246 ITALQLLGGEGNLLASAVVTSYATFLCFSAVSKTPTSSCNPFVGESNTTVVLIGIALTVLSLFW 309          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A836CG76_9STRA (Serine incorporator/TMS membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG76_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.160e-16
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 LIMKV-VTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGES-NLTVVLIGLGLTLLSLIW 210
            LIM V +T+ QLSG EGNLL SA+V+ Y TFL FSAVSK P + CNPF+G S NLT +++GL LT LSL+W
Sbjct:  237 LIMIVAMTVLQLSGPEGNLLTSALVSVYMTFLGFSAVSKNPDASCNPFIGSSQNLTSIIVGLVLTFLSLLW 307          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A7R9WZ09_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZ09_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.230e-15
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   16 VVTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSL 204
            ++T  QLSGGEG+LLAS+++T YAT LC+SAVSK P  DCNPF+GE +   + IG+G T+++L
Sbjct:  318 IITGAQLSGGEGSLLASSLITLYATSLCYSAVSKNPDRDCNPFLGEDDFLGIFIGVGFTVVAL 380          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A1E7F563_9STRA (Serinc-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F563_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.990e-15
Identity = 37/67 (55.22%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    4 LIMKVVTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSL 204
            ++  +VT TQLSG EG+LLAS+++TAYAT LC++AV++ P SDCNP +G  +   ++IGLGLT++SL
Sbjct:  249 ILSLLVTGTQLSGSEGSLLASSLITAYATMLCYNAVTRNPNSDCNPQLGGDDNLSIIIGLGLTIVSL 315          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A7R9WUP5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WUP5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.430e-14
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   22 TLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            T  QLSG EG+LL S+V++ YAT+LCFS VSK P   CNP +G +++  ++IGL LT+LSLIW
Sbjct:   88 TALQLSGTEGSLLTSSVISLYATYLCFSIVSKNPNGTCNPRLGHNDVWGIIIGLFLTVLSLIW 150          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A7S2I2C9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2C9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.610e-14
Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   16 VVTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            +VT  QLSG E +LL SA++ AY+T+LC++AVS+ P  +CNP +G+ ++  +++G+GL LLSL W
Sbjct:  265 IVTAVQLSGEESSLLTSAIIVAYSTYLCYTAVSRNPNDECNPQLGDEDILGIVLGIGLCLLSLTW 329          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A7S2PAW5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PAW5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.770e-14
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    4 LIMKV-VTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            LIM V +T  QLSG +G+LL SA+++AYA +L F+++SK P  DCNP +GE+N   ++IG+G TL+SL W
Sbjct:  263 LIMIVAITGVQLSGEDGSLLTSAIISAYAAYLAFTSMSKNPDGDCNPRLGENNALGIVIGVGFTLISLTW 332          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A1E7FLQ1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.710e-13
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   19 VTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            +T  QLSG EG+LL S VV+ YA +LCFS +S  P  DCNP +G +++  + IGL  T +SLIW
Sbjct:   30 ITAIQLSGTEGSLLTSGVVSIYAIYLCFSIISSNPKGDCNPQLGSNDIWGITIGLLFTTISLIW 93          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A7S2R074_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R074_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.240e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   16 VVTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            VVT+ QLSG EG+L+ SAVV+AY  +L F+AVSK P  +CNP +G +N+  +  GL LT +SL W
Sbjct:  253 VVTIIQLSGTEGSLMTSAVVSAYTAYLAFAAVSKNPNGECNPSLGSNNVWSIAAGLILTSISLAW 317          
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Match: A0A7R9VDP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VDP0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-12
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   19 VTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESNLTVVLIGLGLTLLSLIW 210
            +T+ QLSG EG+LL S+V++AY T+L +S VSK P   CNP +G ++   + IGL LT +SL W
Sbjct:   54 ITVVQLSGTEGSLLTSSVISAYVTYLAYSLVSKNPNGQCNPQLGTNDAWGIAIGLVLTAISLAW 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88881.20623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G4C2_ECTSI1.640e-2582.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG76_9STRA3.160e-1663.38Serine incorporator/TMS membrane protein n=1 Tax=T... [more]
A0A7R9WZ09_9STRA2.230e-1557.14Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A1E7F563_9STRA3.990e-1555.22Serinc-domain-containing protein n=1 Tax=Fragilari... [more]
A0A7R9WUP5_9STRA2.430e-1457.14Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2I2C9_9STRA3.610e-1449.23Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2PAW5_9STRA6.770e-1452.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7FLQ1_9STRA2.710e-1351.56Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2R074_9STRA8.240e-1353.85Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9VDP0_9STRA1.680e-1250.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88881contigM-pyrifera_M_contig88881:519..731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D7G4C2
Preferred nameSERINC3
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002252,GO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006575,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006658,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006952,GO:0006955,GO:0007272,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008324,GO:0008366,GO:0008509,GO:0008514,GO:0008610,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009597,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015194,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015825,GO:0015849,GO:0016020,GO:0016021,GO:0016053,GO:0019637,GO:0019752,GO:0019899,GO:0022857,GO:0022889,GO:0023051,GO:0023056,GO:0030148,GO:0030674,GO:0031090,GO:0031224,GO:0031984,GO:0032329,GO:0032501,GO:0032502,GO:0034220,GO:0042175,GO:0042552,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044085,GO:0044091,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046467,GO:0046486,GO:0046942,GO:0046943,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051607,GO:0051704,GO:0051707,GO:0055085,GO:0060090,GO:0065007,GO:0065009,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0098542,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098827,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902235,GO:1902237,GO:1902475,GO:1902531,GO:1902533,GO:1903825,GO:1904217,GO:1904219,GO:1904220,GO:1904222,GO:1905039,GO:1905897,GO:1905898,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.serine transport
EggNOG OGsKOG2592@1,KOG2592@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.8763406-CDS-M-pyrifera_M_contig88881:518..7221622816798.8763406-CDS-M-pyrifera_M_contig88881:518..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88881 519..722 -
1692278185.3326564-CDS-M-pyrifera_M_contig88881:518..7221692278185.3326564-CDS-M-pyrifera_M_contig88881:518..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88881 519..722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.891147-UTR-M-pyrifera_M_contig88881:722..7311622816798.891147-UTR-M-pyrifera_M_contig88881:722..731Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88881 723..731 -
1692278185.3489857-UTR-M-pyrifera_M_contig88881:722..7311692278185.3489857-UTR-M-pyrifera_M_contig88881:722..731Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88881 723..731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88881.20623.1prot_M-pyrifera_M_contig88881.20623.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88881 519..722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88881.20623.1

>prot_M-pyrifera_M_contig88881.20623.1 ID=prot_M-pyrifera_M_contig88881.20623.1|Name=mRNA_M-pyrifera_M_contig88881.20623.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MKVVTLTQLSGGEGNLLASAVVTAYATFLCFSAVSKTPTSDCNPFVGESN
LTVVLIGLGLTLLSLIW*
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mRNA from alignment at M-pyrifera_M_contig88881:519..731-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88881.20623.1 ID=mRNA_M-pyrifera_M_contig88881.20623.1|Name=mRNA_M-pyrifera_M_contig88881.20623.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig88881:519..731- (Macrocystis pyrifera P11B4 male)
TTTCTCATTATGAAGGTGGTGACGCTCACTCAGCTTTCTGGGGGTGAGGG GAACCTTCTGGCGTCCGCCGTGGTGACCGCATACGCGACCTTCCTCTGCT TTTCGGCGGTTTCGAAGACGCCTACTTCCGACTGCAACCCCTTCGTGGGG GAGTCAAACCTCACCGTCGTGCTAATCGGCCTCGGGCTTACCCTGCTGTC TCTCATCTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88881:519..731-

>mRNA_M-pyrifera_M_contig88881.20623.1 ID=mRNA_M-pyrifera_M_contig88881.20623.1|Name=mRNA_M-pyrifera_M_contig88881.20623.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig88881:519..731- (Macrocystis pyrifera P11B4 male)
ATGAAGGTGGTGACGCTCACTCAGCTTTCTGGGGGTGAGGGGAACCTTCT
GGCGTCCGCCGTGGTGACCGCATACGCGACCTTCCTCTGCTTTTCGGCGG
TTTCGAAGACGCCTACTTCCGACTGCAACCCCTTCGTGGGGGAGTCAAAC
CTCACCGTCGTGCTAATCGGCCTCGGGCTTACCCTGCTGTCTCTCATCTG
GTGAATGAAGGTGGTGACGCTCACTCAGCTTTCTGGGGGTGAGGGGAACC
TTCTGGCGTCCGCCGTGGTGACCGCATACGCGACCTTCCTCTGCTTTTCG
GCGGTTTCGAAGACGCCTACTTCCGACTGCAACCCCTTCGTGGGGGAGTC
AAACCTCACCGTCGTGCTAATCGGCCTCGGGCTTACCCTGCTGTCTCTCA
TCTGGTGA
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