mRNA_M-pyrifera_M_contig88853.20621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88853.20621.1
Unique NamemRNA_M-pyrifera_M_contig88853.20621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88853.20621.1 vs. uniprot
Match: A0A1X7VF94_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VF94_AMPQE)

HSP 1 Score: 59.7 bits (143), Expect = 2.370e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   22 ASVVHVVAYLEDQHIRQWPVEKRSPLREE-GEGWGSVFVRYLRDAECPFAPDLAPSSSXXXXXXPAVPPSFT 234
            A +  +V +LEDQ IR + +++R+PLR+E G+ W  VF +YL D +CPF+ D AP+         AV   FT
Sbjct:   30 AQLKSLVIWLEDQKIRHYTIDERTPLRDETGDNWNKVFEKYLTDMQCPFSFDSAPTPCLHWLIDEAVRCEFT 101          
BLAST of mRNA_M-pyrifera_M_contig88853.20621.1 vs. uniprot
Match: A0A2L2XVB6_PARTP (Uncharacterized protein n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2XVB6_PARTP)

HSP 1 Score: 49.7 bits (117), Expect = 9.180e-5
Identity = 29/89 (32.58%), Postives = 39/89 (43.82%), Query Frame = 1
Query:   40 VAYLEDQHIRQWPVEKRSPLRE-EGEGWGSVFVRYLRDAECPFAPDLAPSSSXXXXXXPAVPPSFTPEELHRLVQWLLGQAICVDFEES 303
            V +LEDQ IRQ+P+E RSPLR      W   F  YL D  CPF                         E   +  WLLG A+ +++ ++
Sbjct:   30 VVWLEDQVIRQYPIEDRSPLRNITNAAWEDAFKVYLADLACPFT------------------------EKEEICDWLLGLAVRLEYGDN 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88853.20621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1X7VF94_AMPQE2.370e-841.67Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A2L2XVB6_PARTP9.180e-532.58Uncharacterized protein n=1 Tax=Parasteatoda tepid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88853contigM-pyrifera_M_contig88853:489..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.7345963-CDS-M-pyrifera_M_contig88853:488..8061622816798.7345963-CDS-M-pyrifera_M_contig88853:488..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88853 489..806 +
1692278185.2455065-CDS-M-pyrifera_M_contig88853:488..8061692278185.2455065-CDS-M-pyrifera_M_contig88853:488..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88853 489..806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88853.20621.1prot_M-pyrifera_M_contig88853.20621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88853 489..806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88853.20621.1

>prot_M-pyrifera_M_contig88853.20621.1 ID=prot_M-pyrifera_M_contig88853.20621.1|Name=mRNA_M-pyrifera_M_contig88853.20621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
LILVAELASVVHVVAYLEDQHIRQWPVEKRSPLREEGEGWGSVFVRYLRD
AECPFAPDLAPSSSASSSSSPAVPPSFTPEELHRLVQWLLGQAICVDFEE
SAAELN
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mRNA from alignment at M-pyrifera_M_contig88853:489..806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88853.20621.1 ID=mRNA_M-pyrifera_M_contig88853.20621.1|Name=mRNA_M-pyrifera_M_contig88853.20621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig88853:489..806+ (Macrocystis pyrifera P11B4 male)
TTGATTCTTGTCGCAGAGTTGGCAAGTGTAGTGCATGTAGTGGCTTATTT GGAAGATCAACACATTCGACAATGGCCTGTGGAGAAACGTAGTCCGTTGC GTGAGGAAGGGGAGGGATGGGGGAGCGTGTTCGTGCGATATTTGCGTGAT GCAGAGTGTCCCTTCGCTCCCGACCTTGCTCCGTCGTCATCTGCTTCATC CTCATCATCCCCAGCAGTACCACCATCATTTACTCCCGAGGAGCTGCATC GGTTGGTGCAATGGTTGTTGGGTCAGGCGATTTGCGTCGATTTTGAAGAG TCTGCCGCAGAATTGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88853:489..806+

>mRNA_M-pyrifera_M_contig88853.20621.1 ID=mRNA_M-pyrifera_M_contig88853.20621.1|Name=mRNA_M-pyrifera_M_contig88853.20621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig88853:489..806+ (Macrocystis pyrifera P11B4 male)
TTGATTCTTGTCGCAGAGTTGGCAAGTGTAGTGCATGTAGTGGCTTATTT
GGAAGATCAACACATTCGACAATGGCCTGTGGAGAAACGTAGTCCGTTGC
GTGAGGAAGGGGAGGGATGGGGGAGCGTGTTCGTGCGATATTTGCGTGAT
GCAGAGTGTCCCTTCGCTCCCGACCTTGCTCCGTCGTCATCTGCTTCATC
CTCATCATCCCCAGCAGTACCACCATCATTTACTCCCGAGGAGCTGCATC
GGTTGGTGCAATGGTTGTTGGGTCAGGCGATTTGCGTCGATTTTGAAGAG
TCTGCCGCAGAATTGAATTTGATTCTTGTCGCAGAGTTGGCAAGTGTAGT
GCATGTAGTGGCTTATTTGGAAGATCAACACATTCGACAATGGCCTGTGG
AGAAACGTAGTCCGTTGCGTGAGGAAGGGGAGGGATGGGGGAGCGTGTTC
GTGCGATATTTGCGTGATGCAGAGTGTCCCTTCGCTCCCGACCTTGCTCC
GTCGTCATCTGCTTCATCCTCATCATCCCCAGCAGTACCACCATCATTTA
CTCCCGAGGAGCTGCATCGGTTGGTGCAATGGTTGTTGGGTCAGGCGATT
TGCGTCGATTTTGAAGAGTCTGCCGCAGAATTGAAT
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