mRNA_M-pyrifera_M_contig88834.20615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88834.20615.1
Unique NamemRNA_M-pyrifera_M_contig88834.20615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88834.20615.1 vs. uniprot
Match: A0A8J8NNU2_HALGN (Wheel domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NNU2_HALGN)

HSP 1 Score: 74.3 bits (181), Expect = 1.040e-13
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 VFEHPAPWDEDGKYKIGNLEVYFETNATVPLG---QEKNYKPTKWVRVDPKCTLLEALQIEGHVVPRIPIFHVIPVGCK 228
            VF  PAPWDE GKY++  +EVYFE ++T PL    + ++    K+V+V  + +LLE LQ   H+VP  P+  VI   CK
Sbjct:  294 VFSEPAPWDEQGKYRMDTIEVYFEADSTTPLDPKDKSRDKSTKKYVKVSLESSLLEVLQHRHHIVPSYPVIKVI---CK 369
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BLAST of mRNA_M-pyrifera_M_contig88834.20615.1 vs. uniprot
Match: A0A2P6MZ65_9EUKA (Wheel domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MZ65_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.550e-12
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   16 APWDEDGKYKIGNLEVYFETNATVPLG---QEKNYKPTKWVRVDPKCTLLEALQIEGHVVPRIPIFHVIPVGCKDKHTYL 246
            APWD + KY I +LE+YFE N+T P+    ++      +W++V P  TL   L    HVVP +PIFH++    + K  ++
Sbjct:  287 APWDTEKKYVIDSLEIYFEANSTAPIDPKMKKSGSSKRRWIKVKPTTTLKTVLAHPDHVVPGVPIFHIVANNSRYKDVFV 366
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BLAST of mRNA_M-pyrifera_M_contig88834.20615.1 vs. uniprot
Match: J9IW38_9SPIT (Tetratricopeptide repeat domain 4 n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IW38_9SPIT)

HSP 1 Score: 70.5 bits (171), Expect = 2.560e-12
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 VFEHPAPWDEDGKYKIGNLEVYFETNATVPL-----GQEKNYKPTKWVRVDPKCTLLEALQIEGHVVPRIPIFHVIPVGCK 228
            +F   APWD++GKY++  +EVYFE ++T PL      +EK+ K  K+VR +   +LLE LQ + H+VP+ P+  VI   CK
Sbjct:  304 IFNERAPWDDEGKYRMDTIEVYFEADSTTPLDPKDKAREKSTK--KYVRCNLDSSLLEVLQHQFHIVPQYPVLKVI---CK 379
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BLAST of mRNA_M-pyrifera_M_contig88834.20615.1 vs. uniprot
Match: D2A4U6_TRICA (Tetratricopeptide repeat protein 4-like Protein n=1 Tax=Tribolium castaneum TaxID=7070 RepID=D2A4U6_TRICA)

HSP 1 Score: 58.5 bits (140), Expect = 4.340e-8
Identity = 32/83 (38.55%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 VFEHPAPWDEDGKYKIGNLEVYFETNATVPLGQEKNYKPTKWVRVDPKCTLLEALQIEGHVVPR-IPIFHVIPVGCKDKHTYL 246
            VFE    WD +GKY++GNL VYFE             K  + V VD   TLLE L++EGHV+    P F ++P   + +  +L
Sbjct:  310 VFETRPEWDCEGKYRVGNLNVYFED------------KKNRIVPVDVSRTLLEVLKLEGHVIREGTPKFIILPANSRVEKLFL 380
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BLAST of mRNA_M-pyrifera_M_contig88834.20615.1 vs. uniprot
Match: A0A8J6LCD9_TENMO (Wheel domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LCD9_TENMO)

HSP 1 Score: 53.1 bits (126), Expect = 3.550e-6
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:    1 VFEHPAPWDEDGKYKIGNLEVYFETNATVPLGQEKNYKPTKWVRVDPKCTLLEALQIEGHVVPR-IPIFHVIPVGCKDKHTYL 246
            VFE    WDE+ KYK+ NL VYFE        + KN      V+VD   TLLE L+++ H++    P F ++    K +  +L
Sbjct:  309 VFETSPEWDEERKYKVNNLNVYFENE------KRKN------VKVDVSKTLLEILKLDDHIIKEGTPKFVILVANSKVERLFL 379
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88834.20615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A8J8NNU2_HALGN1.040e-1344.30Wheel domain-containing protein n=1 Tax=Halteria g... [more]
A0A2P6MZ65_9EUKA1.550e-1237.50Wheel domain-containing protein n=1 Tax=Planoproto... [more]
J9IW38_9SPIT2.560e-1243.21Tetratricopeptide repeat domain 4 n=1 Tax=Oxytrich... [more]
D2A4U6_TRICA4.340e-838.55Tetratricopeptide repeat protein 4-like Protein n=... [more]
A0A8J6LCD9_TENMO3.550e-636.14Wheel domain-containing protein n=1 Tax=Tenebrio m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88834contigM-pyrifera_M_contig88834:23..280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.3366408-CDS-M-pyrifera_M_contig88834:22..2801622816798.3366408-CDS-M-pyrifera_M_contig88834:22..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88834 23..280 +
1692278184.9874802-CDS-M-pyrifera_M_contig88834:22..2801692278184.9874802-CDS-M-pyrifera_M_contig88834:22..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88834 23..280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88834.20615.1prot_M-pyrifera_M_contig88834.20615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88834 23..280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88834.20615.1

>prot_M-pyrifera_M_contig88834.20615.1 ID=prot_M-pyrifera_M_contig88834.20615.1|Name=mRNA_M-pyrifera_M_contig88834.20615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
VFEHPAPWDEDGKYKIGNLEVYFETNATVPLGQEKNYKPTKWVRVDPKCT
LLEALQIEGHVVPRIPIFHVIPVGCKDKHTYLPSE*
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mRNA from alignment at M-pyrifera_M_contig88834:23..280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88834.20615.1 ID=mRNA_M-pyrifera_M_contig88834.20615.1|Name=mRNA_M-pyrifera_M_contig88834.20615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig88834:23..280+ (Macrocystis pyrifera P11B4 male)
GTGTTTGAGCACCCGGCCCCTTGGGACGAGGACGGCAAGTACAAGATCGG
CAACCTTGAGGTTTACTTTGAGACGAACGCCACTGTGCCCCTTGGACAGG
AGAAGAACTATAAGCCTACGAAGTGGGTCAGAGTCGACCCCAAGTGCACT
CTCCTTGAGGCACTGCAGATAGAGGGACATGTGGTGCCTAGGATCCCAAT
TTTCCACGTGATACCCGTGGGTTGCAAGGACAAGCACACCTACCTCCCCT
CAGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88834:23..280+

>mRNA_M-pyrifera_M_contig88834.20615.1 ID=mRNA_M-pyrifera_M_contig88834.20615.1|Name=mRNA_M-pyrifera_M_contig88834.20615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig88834:23..280+ (Macrocystis pyrifera P11B4 male)
GTGTTTGAGCACCCGGCCCCTTGGGACGAGGACGGCAAGTACAAGATCGG
CAACCTTGAGGTTTACTTTGAGACGAACGCCACTGTGCCCCTTGGACAGG
AGAAGAACTATAAGCCTACGAAGTGGGTCAGAGTCGACCCCAAGTGCACT
CTCCTTGAGGCACTGCAGATAGAGGGACATGTGGTGCCTAGGATCCCAAT
TTTCCACGTGATACCCGTGGGTTGCAAGGACAAGCACACCTACCTCCCCT
CAGAATGAGTGTTTGAGCACCCGGCCCCTTGGGACGAGGACGGCAAGTAC
AAGATCGGCAACCTTGAGGTTTACTTTGAGACGAACGCCACTGTGCCCCT
TGGACAGGAGAAGAACTATAAGCCTACGAAGTGGGTCAGAGTCGACCCCA
AGTGCACTCTCCTTGAGGCACTGCAGATAGAGGGACATGTGGTGCCTAGG
ATCCCAATTTTCCACGTGATACCCGTGGGTTGCAAGGACAAGCACACCTA
CCTCCCCTCAGAATGA
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