mRNA_M-pyrifera_M_contig8882.20611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8882.20611.1
Unique NamemRNA_M-pyrifera_M_contig8882.20611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.780e-31
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:   34 VISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            +++ELL GSN G L+ GD+ RV  ++     T++K WK Y ++K  G  DPDL ++RKGNSG KG+D+   +EAL  I +KNRT+ RS+AAALG+P+STLF+NL  LG
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLG 108
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.040e-24
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    1 RKNLTIPERRAVISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            RKN    ER  VI  LL  S  G L  G     A+ +  +  TI  +W ++ ++++ G     + + RKGNSG KGIDLE  R  L  IP+  RT+QR LAAALG+P+ TLF NLEKLG
Sbjct:   13 RKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLG 131
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.360e-24
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    1 RKNLTIPERRAVISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            RKN  + ER  V+  LL  S  G    G   R A+ +  +  TI ++W+++ K++ +G     + + RKG+SG KGID+E+ R  L +IP+  RT+QR LAAALG+P+STL NNL+ LG
Sbjct:   13 RKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALG 131
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 6.770e-24
Identity = 54/119 (45.38%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:    1 RKNLTIPERRAVISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            RKN    E   VI  LL GS  G L  G      + F     TI +LW  Y  Q   GV  P + +RRKGNSG +GI LE  +E    IP+  RT+QR LAAAL +P+STL  NL+ LG
Sbjct:   13 RKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALG 131
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.300e-23
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    1 RKNLTIPERRAVISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            RKN  + ER  V+  LL  S  G    G   R A+ +  +  TI ++W+++ K++ +G     + + RKG+SG KGID+E+ R  L +IP+  RT+QR LAAALG+P+STL NNL+ LG
Sbjct:   13 RKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALG 131
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.240e-17
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:  136 KLWKEYGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            +LW  Y  Q+  GV  P + + RKGNSG KGI ++  RE L  IP+ +RT+QR LAAALG+  +TLF+NL+ LG
Sbjct:   19 RLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALG 92
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.960e-16
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  151 YGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            Y  Q   GV  P + +RRKGNSG KGI LE  +E L  IP+ +RT+QR LAAALG+P+STL  NL+ LG
Sbjct:    3 YDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLG 71
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.210e-14
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  151 YGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEKLG 357
            Y  Q   GV  P + +RR GNSG KGI LE  RE L  IP+ NRT+QR LAAALG+P+STL  N + LG
Sbjct:    3 YYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPL-NRTTQRRLAAALGIPKSTLHRNPKALG 70
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: A0A3L6UR94_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UR94_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.050e-12
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    1 RKNLTIPERRAVISELLTGS-NKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDP--DLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTL 333
            + NLT  ER A++ +LLT   +  TLA G L  VA++F+ +R T++++WK      +N    P   ++SR KG+SG + +  E   E L +IP   RT+ RS+AAA+ M RSTL
Sbjct:    4 KPNLTAIERNAILQQLLTRMVDHKTLAHGSLKDVAKVFNVSRTTVSRIWKRAMVDFTN-TTRPCSSVASRIKGHSG-RNLKHESVAERLKKIPKTQRTTFRSIAAAMNMSRSTL 115
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BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Match: UPI000E6F4D32 (uncharacterized protein LOC113315611 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4D32)

HSP 1 Score: 71.2 bits (173), Expect = 3.670e-12
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 RKNLTIPERRAVISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKEYGKQKSNGVVDPDLSSRRKGNSGHKG--IDLEHFREALAQIPMKNRTSQRSLAAALGMPRSTLFNNLEK 351
            +KNLT  +R ++   LL  SNKG + +G + + AQ+F  +  T+ ++WK  GK      +  D+SSR+    G K   +DL    E    IP++ RTS RS+  AL MP+ST+  +++K
Sbjct:   99 KKNLTNEQRLSIFHFLLKESNKGRVQKGSVPKAAQLFSVSESTVKRIWKR-GKDCKAKDLPFDVSSRKPTRVGPKPRKVDLSKIME----IPLRQRTSIRSIVEALNMPKSTVHRHIKK 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8882.20611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD91_9PHAE1.780e-3151.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE1.040e-2445.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW0_9PHAE4.360e-2442.86Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE6.770e-2445.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE4.300e-2342.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE9.240e-1751.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL2_9PHAE2.960e-1656.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE1.210e-1456.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3L6UR94_9STRA2.050e-1240.35Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
UPI000E6F4D323.670e-1236.13uncharacterized protein LOC113315611 n=1 Tax=Papav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8882contigM-pyrifera_M_contig8882:1261..1617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog4792.ETI48513
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QH7V@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.1871092-CDS-M-pyrifera_M_contig8882:1260..16171622816798.1871092-CDS-M-pyrifera_M_contig8882:1260..1617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8882 1261..1617 +
1692278184.8915355-CDS-M-pyrifera_M_contig8882:1260..16171692278184.8915355-CDS-M-pyrifera_M_contig8882:1260..1617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8882 1261..1617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8882.20611.1prot_M-pyrifera_M_contig8882.20611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8882 1261..1617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8882.20611.1

>prot_M-pyrifera_M_contig8882.20611.1 ID=prot_M-pyrifera_M_contig8882.20611.1|Name=mRNA_M-pyrifera_M_contig8882.20611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
RKNLTIPERRAVISELLTGSNKGTLARGDLTRVAQMFDTNRYTIAKLWKE
YGKQKSNGVVDPDLSSRRKGNSGHKGIDLEHFREALAQIPMKNRTSQRSL
AAALGMPRSTLFNNLEKLG
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mRNA from alignment at M-pyrifera_M_contig8882:1261..1617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8882.20611.1 ID=mRNA_M-pyrifera_M_contig8882.20611.1|Name=mRNA_M-pyrifera_M_contig8882.20611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig8882:1261..1617+ (Macrocystis pyrifera P11B4 male)
AGGAAAAACTTGACTATCCCGGAGCGGCGGGCTGTGATATCCGAGCTCCT
CACGGGCAGCAACAAGGGCACCTTAGCCAGGGGCGACCTTACGAGAGTTG
CCCAGATGTTCGACACGAACAGGTACACCATCGCGAAACTGTGGAAAGAG
TACGGAAAGCAGAAGAGCAATGGCGTGGTTGATCCGGACCTGTCAAGCCG
GCGCAAGGGGAATTCGGGCCATAAGGGAATTGACCTGGAGCACTTTCGAG
AGGCCCTGGCGCAGATCCCCATGAAGAACCGCACCTCGCAGCGCTCGCTT
GCGGCGGCCTTGGGCATGCCGAGATCGACCCTATTCAACAACCTCGAGAA
GCTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8882:1261..1617+

>mRNA_M-pyrifera_M_contig8882.20611.1 ID=mRNA_M-pyrifera_M_contig8882.20611.1|Name=mRNA_M-pyrifera_M_contig8882.20611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig8882:1261..1617+ (Macrocystis pyrifera P11B4 male)
AGGAAAAACTTGACTATCCCGGAGCGGCGGGCTGTGATATCCGAGCTCCT
CACGGGCAGCAACAAGGGCACCTTAGCCAGGGGCGACCTTACGAGAGTTG
CCCAGATGTTCGACACGAACAGGTACACCATCGCGAAACTGTGGAAAGAG
TACGGAAAGCAGAAGAGCAATGGCGTGGTTGATCCGGACCTGTCAAGCCG
GCGCAAGGGGAATTCGGGCCATAAGGGAATTGACCTGGAGCACTTTCGAG
AGGCCCTGGCGCAGATCCCCATGAAGAACCGCACCTCGCAGCGCTCGCTT
GCGGCGGCCTTGGGCATGCCGAGATCGACCCTATTCAACAACCTCGAGAA
GCTCGGCAGGAAAAACTTGACTATCCCGGAGCGGCGGGCTGTGATATCCG
AGCTCCTCACGGGCAGCAACAAGGGCACCTTAGCCAGGGGCGACCTTACG
AGAGTTGCCCAGATGTTCGACACGAACAGGTACACCATCGCGAAACTGTG
GAAAGAGTACGGAAAGCAGAAGAGCAATGGCGTGGTTGATCCGGACCTGT
CAAGCCGGCGCAAGGGGAATTCGGGCCATAAGGGAATTGACCTGGAGCAC
TTTCGAGAGGCCCTGGCGCAGATCCCCATGAAGAACCGCACCTCGCAGCG
CTCGCTTGCGGCGGCCTTGGGCATGCCGAGATCGACCCTATTCAACAACC
TCGAGAAGCTCGGC
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