mRNA_M-pyrifera_M_contig88784.20609.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88784.20609.1
Unique NamemRNA_M-pyrifera_M_contig88784.20609.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A7S1UJY0_9STRA (Protein yippee-like n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJY0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.170e-30
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGR+F + L G  I+CC GCG HL    +++SR                          FHGR G+A+LF+   NV  GP ++R+L+TG H VADI+C+ C   +GWTY  A +P Q+YK G+F++E
Sbjct:    1 MGRIFRRYLEGPKIYCCEGCGTHLSTNDQIISRA-------------------------FHGRGGRAFLFNTAINVSTGPPERRMLITGMHVVADIYCIQCQALIGWTYEQAFEPTQKYKEGKFILE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A6A5BX87_NAEFO (Protein yippee-like n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BX87_NAEFO)

HSP 1 Score: 109 bits (273), Expect = 1.310e-28
Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGRL+L+ L+G  I+ C+ C +HL    E++S+                          FHGR GKAYLF++  NV  GP ++R LMTG H V DI+CV C   VGW Y  A +  ++YKVG+FV+E
Sbjct:    1 MGRLYLKYLNGSSIYVCSNCNSHLSMNDEIISK-------------------------HFHGRFGKAYLFNKAINVTTGPCEERQLMTGLHVVCDIYCVNCKANVGWKYKKAYESSEQYKVGKFVLE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: D2VJJ2_NAEGR (Protein yippee-like n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VJJ2_NAEGR)

HSP 1 Score: 108 bits (271), Expect = 2.420e-28
Identity = 51/127 (40.16%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGRLFL+ L G  ++ C+ C +HLC   E++S+                          FHGR GKAYLF++  NV  GP ++R LMTG H V D++CV C   VGW Y  A    ++YKVG+F +E
Sbjct:    1 MGRLFLRYLDGPSVYVCSNCNSHLCMNDEIISK-------------------------HFHGRYGKAYLFNKAVNVSNGPLEERQLMTGLHVVCDVYCVNCKSNVGWKYKEAYATTEQYKVGKFCLE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A2V0PQX4_9CHLO (Protein yippee-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PQX4_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 1.160e-26
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGR F Q L    ++ CAGCGAH     +++S+                          F GR G+AYLF    N+  GP + RLL+TG H VADIHCV CD  +GW Y  A +  Q+YK G+F++E
Sbjct:    1 MGRPFRQYLGSLRVYACAGCGAHAADGDDIVSKA-------------------------FQGRHGRAYLFSNVVNIAVGPKEDRLLITGLHTVADIHCVVCDTNLGWKYLTAYEQSQKYKEGKFILE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: B7G3J9_PHATC (Protein yippee-like (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3J9_PHATC)

HSP 1 Score: 103 bits (258), Expect = 1.610e-26
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   25 LSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            L G  ++ CA C  HL    +++S+                          FHGR G+AYLFD+C NV  GPSQ+R LMTG H+V DI C  CD  VGWTY  A +  Q+YK G++++E
Sbjct:    4 LDGPQVYACAQCRTHLTSHDDIISK-------------------------SFHGRHGRAYLFDQCVNVRNGPSQERWLMTGMHQVCDIFCKRCDSMVGWTYLKAFEASQKYKEGKYIIE 97          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A6T0DRN4_CHRCT (Protein yippee-like n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0DRN4_CHRCT)

HSP 1 Score: 105 bits (261), Expect = 2.590e-26
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGRLFLQ +  D + CCA CG HL     ++S+                          F GR G+AYLF    NV  GP + RLL+TG H V+DI C  CD  +GW Y  A +  Q+YK G+F++E
Sbjct:    1 MGRLFLQYVDADVVHCCASCGTHLAAHDTIVSKA-------------------------FQGRHGRAYLFSDVINVNTGPEENRLLLTGLHVVSDIFCNSCDTRLGWKYIEALEENQKYKEGKFILE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A7S1CM65_9STRA (Protein yippee-like n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM65_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.020e-26
Identity = 50/127 (39.37%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGR++L  L GD  + C GC  HL + +++L+                           FHGR G+AYLFD   NV  GP + R+LMTG H V D+ C  C  A+GWTY  A +  Q+YK G+FV+E
Sbjct:    8 MGRVYLTYLDGDKNYVCTGCHCHLARAADILN-------------------------DSFHGRHGRAYLFDNAVNVLKGPREDRILMTGLHTVRDVFCARCSLALGWTYDEAFEASQKYKEGKFVIE 109          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A7S0PYG5_9EUKA (Protein yippee-like n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYG5_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 4.290e-26
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGRLFL+ +  + + CCA CG HL     ++S+                          F GR G+AYLF    N+ +GP++ RLL+TG H VADI C  CD  +GW Y  A +  Q+YK G+F++E
Sbjct:    1 MGRLFLEYVEAEDVHCCAECGTHLAAHDTIISKA-------------------------FQGRHGRAYLFSDVVNINSGPTENRLLLTGLHVVADIFCNACDTRLGWKYVEAFEENQKYKEGKFILE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A2D4BE37_PYTIN (Protein yippee-like n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE37_PYTIN)

HSP 1 Score: 103 bits (256), Expect = 4.430e-26
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGR+F Q L    +F C  C  HL     ++S+                          FHGRTGKAYLFD+C N+  GP ++R+LMTG H V D++C  C   +GW Y  A + +++YK+G+ V+E
Sbjct:    1 MGRVFKQYLESSKVFSCRECKTHLSSADAIVSKT-------------------------FHGRTGKAYLFDKCVNITTGPPEERMLMTGLHVVVDVYCNTCWNHLGWKYEEAHEEKEKYKIGKIVLE 102          
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Match: A0A835Z468_9STRA (Protein yippee-like n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z468_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.430e-26
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVEWCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVGCDEAVGWTYYGASDPQQRYKVGRFVME 381
            MGR+F + L G  I+ C  CG H   + +++S                         + FHGR G+A+LF++  NV  GP ++R+L+TG H VADI+CV C   VGW Y  A +  Q+YK G+F++E
Sbjct:    1 MGRIFKRYLEGPQIYSCLECGTHFTTKQDIIS-------------------------ENFHGRGGRAFLFNQAVNVTQGPLEKRMLITGMHTVADIYCVDCQSLVGWRYERAFEESQKYKEGKFILE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88784.20609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UJY0_9STRA1.170e-3040.16Protein yippee-like n=1 Tax=Phaeomonas parva TaxID... [more]
A0A6A5BX87_NAEFO1.310e-2840.94Protein yippee-like n=2 Tax=Naegleria TaxID=5761 R... [more]
D2VJJ2_NAEGR2.420e-2840.16Protein yippee-like n=1 Tax=Naegleria gruberi TaxI... [more]
A0A2V0PQX4_9CHLO1.160e-2639.37Protein yippee-like n=1 Tax=Raphidocelis subcapita... [more]
B7G3J9_PHATC1.610e-2640.34Protein yippee-like (Fragment) n=2 Tax=Phaeodactyl... [more]
A0A6T0DRN4_CHRCT2.590e-2639.37Protein yippee-like n=1 Tax=Chrysotila carterae Ta... [more]
A0A7S1CM65_9STRA3.020e-2639.37Protein yippee-like n=1 Tax=Bicosoecida sp. CB-201... [more]
A0A7S0PYG5_9EUKA4.290e-2637.80Protein yippee-like n=2 Tax=Coccolithus braarudii ... [more]
A0A2D4BE37_PYTIN4.430e-2637.01Protein yippee-like n=1 Tax=Pythium insidiosum Tax... [more]
A0A835Z468_9STRA4.430e-2637.01Protein yippee-like n=1 Tax=Tribonema minus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88784contigM-pyrifera_M_contig88784:386..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.8e-21
Seed eggNOG ortholog5762.XP_002675699.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of cellular senescence
EggNOG OGsKOG3399@1,KOG3399@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size381
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.9772327-CDS-M-pyrifera_M_contig88784:385..5001622816797.9772327-CDS-M-pyrifera_M_contig88784:385..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88784 386..500 +
1692278184.7045655-CDS-M-pyrifera_M_contig88784:385..5001692278184.7045655-CDS-M-pyrifera_M_contig88784:385..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88784 386..500 +
1622816797.9889889-CDS-M-pyrifera_M_contig88784:524..7901622816797.9889889-CDS-M-pyrifera_M_contig88784:524..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88784 525..790 +
1692278184.7182627-CDS-M-pyrifera_M_contig88784:524..7901692278184.7182627-CDS-M-pyrifera_M_contig88784:524..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88784 525..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88784.20609.1prot_M-pyrifera_M_contig88784.20609.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88784 386..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88784.20609.1

>prot_M-pyrifera_M_contig88784.20609.1 ID=prot_M-pyrifera_M_contig88784.20609.1|Name=mRNA_M-pyrifera_M_contig88784.20609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MGRLFLQLLSGDGIFCCAGCGAHLCQRSEVLSRVKKALGYCVDAWGLRVE
WCLRLCLQGFHGRTGKAYLFDRCYNVEAGPSQQRLLMTGWHRVADIHCVG
CDEAVGWTYYGASDPQQRYKVGRFVME
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mRNA from alignment at M-pyrifera_M_contig88784:386..790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88784.20609.1 ID=mRNA_M-pyrifera_M_contig88784.20609.1|Name=mRNA_M-pyrifera_M_contig88784.20609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig88784:386..790+ (Macrocystis pyrifera P11B4 male)
ATGGGACGTTTGTTCCTTCAGTTGTTAAGTGGAGATGGAATCTTTTGTTG TGCAGGGTGTGGAGCACACCTTTGTCAGCGCTCTGAAGTGCTTTCTCGGG TAAAGAAAGCGTTGGGTGGGTTGTAGAGTTGGGAATGAGGGTATTGTGTT GATGCTTGGGGTTTGAGAGTGGAATGGTGTTTGAGATTGTGTTTGCAGGG GTTTCATGGTAGGACAGGGAAGGCCTATTTGTTTGATCGATGCTACAATG TAGAGGCTGGCCCATCGCAACAACGATTACTGATGACTGGATGGCATCGA GTGGCTGATATCCATTGTGTTGGGTGTGATGAAGCTGTAGGATGGACTTA TTATGGAGCTAGTGATCCACAACAAAGGTACAAGGTGGGGAGATTTGTGA TGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88784:386..790+

>mRNA_M-pyrifera_M_contig88784.20609.1 ID=mRNA_M-pyrifera_M_contig88784.20609.1|Name=mRNA_M-pyrifera_M_contig88784.20609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig88784:386..790+ (Macrocystis pyrifera P11B4 male)
ATGGGACGTTTGTTCCTTCAGTTGTTAAGTGGAGATGGAATCTTTTGTTG
TGCAGGGTGTGGAGCACACCTTTGTCAGCGCTCTGAAGTGCTTTCTCGGG
TAAAGAAAGCGTTGGATGGGACGTTTGTTCCTTCAGTTGTTAAGTGGAGA
TGGAATCTTTTGTTGTGCAGGGTGTGGAGCACACCTTTGTCAGCGCTCTG
AAGTGCTTTCTCGGGTAAAGAAAGCGTTGGGGTATTGTGTTGATGCTTGG
GGTTTGAGAGTGGAATGGTGTTTGAGATTGTGTTTGCAGGGGTTTCATGG
TAGGACAGGGAAGGCCTATTTGTTTGATCGATGCTACAATGTAGAGGCTG
GCCCATCGCAACAACGATTACTGATGACTGGATGGCATCGAGTGGCTGAT
ATCCATTGTGTTGGGTGTGATGAAGCTGTAGGATGGACTTATTATGGAGC
TAGTGATCCACAACAAAGGTACAAGGTGGGGAGATTTGTGATGGAAGGTA
TTGTGTTGATGCTTGGGGTTTGAGAGTGGAATGGTGTTTGAGATTGTGTT
TGCAGGGGTTTCATGGTAGGACAGGGAAGGCCTATTTGTTTGATCGATGC
TACAATGTAGAGGCTGGCCCATCGCAACAACGATTACTGATGACTGGATG
GCATCGAGTGGCTGATATCCATTGTGTTGGGTGTGATGAAGCTGTAGGAT
GGACTTATTATGGAGCTAGTGATCCACAACAAAGGTACAAGGTGGGGAGA
TTTGTGATGGAA
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