mRNA_M-pyrifera_M_contig88764.20603.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88764.20603.1
Unique NamemRNA_M-pyrifera_M_contig88764.20603.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A2E7K970_9PLAN (YjgF_endoribonc domain-containing protein n=13 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E7K970_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 4.420e-47
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIIDA 237
            VRDEHGTLDGLRVIKLLG VNSTPDF DQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIIDA
Sbjct:   69 VRDEHGTLDGLRVIKLLGCVNSTPDFNDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIIDA 147          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A6BZ42_9PLAN (Endoribonuclease L-PSP, putative n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6BZ42_9PLAN)

HSP 1 Score: 148 bits (373), Expect = 3.450e-44
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIIDA 237
            VRDEHGTLDGL+V+KLLG VNSTPDFTDQHLVINGASDLFHELYGK+GDGYHARSALGFAALPTGVAVE+EA+FEI ++
Sbjct:   69 VRDEHGTLDGLKVVKLLGCVNSTPDFTDQHLVINGASDLFHELYGKSGDGYHARSALGFAALPTGVAVEIEAVFEIKES 147          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A2E0ASQ6_9BACT (YjgF_endoribonc domain-containing protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0ASQ6_9BACT)

HSP 1 Score: 139 bits (351), Expect = 7.240e-41
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEI 228
            V DEHGTLDGLRV+KLLG V S PDFTDQHLVINGASDL+HEL+GKTGDGYHARSALGFAALPTG AVE+EAIFEI
Sbjct:   69 VHDEHGTLDGLRVVKLLGCVYSAPDFTDQHLVINGASDLYHELFGKTGDGYHARSALGFAALPTGAAVEIEAIFEI 144          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A517ZP01_9PLAN (Endoribonuclease L-PSP n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZP01_9PLAN)

HSP 1 Score: 139 bits (351), Expect = 7.690e-41
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIID 234
            VR  HGTL+GL+VIKLLG VNST DFTDQHLVINGASDL HELYGK GDGYHARSALGFAALPTGVAVEVEA+FEIID
Sbjct:   69 VRSHHGTLNGLKVIKLLGCVNSTLDFTDQHLVINGASDLLHELYGKDGDGYHARSALGFAALPTGVAVEVEAVFEIID 146          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A2E5EH00_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E5EH00_9BACT)

HSP 1 Score: 139 bits (350), Expect = 1.060e-40
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEI 228
            V D HGTLDGLRVIKLLG V S PDFTDQHLVINGASDLFHELYGK GDGYHARSA+GFAALPTGVAVEVEAIFEI
Sbjct:   70 VHDTHGTLDGLRVIKLLGMVYSAPDFTDQHLVINGASDLFHELYGKEGDGYHARSAVGFAALPTGVAVEVEAIFEI 145          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A7C7WY90_9PLAN (RidA family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7WY90_9PLAN)

HSP 1 Score: 135 bits (340), Expect = 3.630e-39
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEI 228
            V DEHGTLDGLRVIKLLG V S PDFTDQHLVINGASDL H+L+GK GDGYHARSALGFAALPTG AVEVEAIFE+
Sbjct:   70 VHDEHGTLDGLRVIKLLGCVYSAPDFTDQHLVINGASDLLHDLFGKDGDGYHARSALGFAALPTGAAVEVEAIFEV 145          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A5C6CNH7_9BACT (Endoribonuclease L-PSP n=5 Tax=Pirellulaceae TaxID=2691357 RepID=A0A5C6CNH7_9BACT)

HSP 1 Score: 135 bits (340), Expect = 8.790e-39
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEII 231
            VR+ HG+LDGL+V+KLLG V S PDFTD HLVINGASDLFHELYGK GDGYHARSALGFAALPTGVAVEVEA+FEI+
Sbjct:  101 VRNTHGSLDGLKVVKLLGCVYSAPDFTDHHLVINGASDLFHELYGKDGDGYHARSALGFAALPTGVAVEVEAVFEIL 177          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A517ZDP9_9PLAN (Endoribonuclease L-PSP n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZDP9_9PLAN)

HSP 1 Score: 134 bits (337), Expect = 9.770e-39
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEII 231
            V   HGT++GL+VIKLLG VNST DFTDQHLVINGASDL HELYGK GDGYHARSALGFAALPTGVAVEVEAIFEII
Sbjct:   69 VHSAHGTINGLKVIKLLGCVNSTLDFTDQHLVINGASDLLHELYGKEGDGYHARSALGFAALPTGVAVEVEAIFEII 145          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A518CRZ9_9PLAN (Endoribonuclease L-PSP n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CRZ9_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 1.470e-38
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIIDA 237
            VR  HGTLDGL+VIKL G VNSTPDF +QHLVING SDL HE++GKTGDGYHARSALGFAALPTGVAVEVEA+FEI ++
Sbjct:   69 VRSTHGTLDGLKVIKLFGCVNSTPDFIEQHLVINGISDLMHEIFGKTGDGYHARSALGFAALPTGVAVEVEAVFEIKES 147          
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Match: A0A2E6TVQ9_9BACT (YjgF_endoribonc domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A2E6TVQ9_9BACT)

HSP 1 Score: 133 bits (335), Expect = 2.090e-38
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDGYHARSALGFAALPTGVAVEVEAIFEIIDA 237
            V + HGT++GL+VIKLLG V S PDFTDQHLVINGASDL HE+YGK GDGYHARSALGFAALPTG AVEVEAIFEI++A
Sbjct:   69 VHNAHGTINGLKVIKLLGCVYSAPDFTDQHLVINGASDLLHEIYGKDGDGYHARSALGFAALPTGAAVEVEAIFEIVEA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88764.20603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K970_9PLAN4.420e-4797.47YjgF_endoribonc domain-containing protein n=13 Tax... [more]
A6BZ42_9PLAN3.450e-4488.61Endoribonuclease L-PSP, putative n=5 Tax=Planctomy... [more]
A0A2E0ASQ6_9BACT7.240e-4188.16YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A517ZP01_9PLAN7.690e-4188.46Endoribonuclease L-PSP n=3 Tax=Symmachiella TaxID=... [more]
A0A2E5EH00_9BACT1.060e-4090.79Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A7C7WY90_9PLAN3.630e-3986.84RidA family protein n=1 Tax=Planctomycetaceae bact... [more]
A0A5C6CNH7_9BACT8.790e-3984.42Endoribonuclease L-PSP n=5 Tax=Pirellulaceae TaxID... [more]
A0A517ZDP9_9PLAN9.770e-3987.01Endoribonuclease L-PSP n=1 Tax=Maioricimonas raris... [more]
A0A518CRZ9_9PLAN1.470e-3881.01Endoribonuclease L-PSP n=1 Tax=Polystyrenella long... [more]
A0A2E6TVQ9_9BACT2.090e-3881.01YjgF_endoribonc domain-containing protein n=5 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88764contigM-pyrifera_M_contig88764:2..241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score150.2
Seed ortholog evalue4.1e-34
Seed eggNOG ortholog344747.PM8797T_28454
Preferred nametdcF2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YjgF/chorismate_mutase-like, putative endoribonuclease
EggNOG OGs2IZC0@203682,COG0251@1,COG0251@2
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.7024806-CDS-M-pyrifera_M_contig88764:1..2411622816797.7024806-CDS-M-pyrifera_M_contig88764:1..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88764 2..241 +
1692278184.5273826-CDS-M-pyrifera_M_contig88764:1..2411692278184.5273826-CDS-M-pyrifera_M_contig88764:1..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88764 2..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88764.20603.1prot_M-pyrifera_M_contig88764.20603.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88764 2..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88764.20603.1

>prot_M-pyrifera_M_contig88764.20603.1 ID=prot_M-pyrifera_M_contig88764.20603.1|Name=mRNA_M-pyrifera_M_contig88764.20603.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
VRDEHGTLDGLRVIKLLGYVNSTPDFTDQHLVINGASDLFHELYGKTGDG
YHARSALGFAALPTGVAVEVEAIFEIIDA*
back to top

mRNA from alignment at M-pyrifera_M_contig88764:2..241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88764.20603.1 ID=mRNA_M-pyrifera_M_contig88764.20603.1|Name=mRNA_M-pyrifera_M_contig88764.20603.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig88764:2..241+ (Macrocystis pyrifera P11B4 male)
GTTCGGGATGAGCACGGAACACTCGATGGGCTGCGGGTCATCAAGCTGCT GGGCTACGTCAACTCGACTCCTGATTTTACCGATCAGCACCTGGTGATTA ATGGTGCTTCTGATCTGTTCCACGAACTTTACGGCAAGACCGGCGATGGT TACCACGCCCGCAGTGCACTCGGTTTTGCAGCGCTGCCTACAGGTGTGGC TGTTGAAGTAGAAGCGATTTTTGAAATTATCGATGCATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88764:2..241+

>mRNA_M-pyrifera_M_contig88764.20603.1 ID=mRNA_M-pyrifera_M_contig88764.20603.1|Name=mRNA_M-pyrifera_M_contig88764.20603.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig88764:2..241+ (Macrocystis pyrifera P11B4 male)
GTTCGGGATGAGCACGGAACACTCGATGGGCTGCGGGTCATCAAGCTGCT
GGGCTACGTCAACTCGACTCCTGATTTTACCGATCAGCACCTGGTGATTA
ATGGTGCTTCTGATCTGTTCCACGAACTTTACGGCAAGACCGGCGATGGT
TACCACGCCCGCAGTGCACTCGGTTTTGCAGCGCTGCCTACAGGTGTGGC
TGTTGAAGTAGAAGCGATTTTTGAAATTATCGATGCATAAGTTCGGGATG
AGCACGGAACACTCGATGGGCTGCGGGTCATCAAGCTGCTGGGCTACGTC
AACTCGACTCCTGATTTTACCGATCAGCACCTGGTGATTAATGGTGCTTC
TGATCTGTTCCACGAACTTTACGGCAAGACCGGCGATGGTTACCACGCCC
GCAGTGCACTCGGTTTTGCAGCGCTGCCTACAGGTGTGGCTGTTGAAGTA
GAAGCGATTTTTGAAATTATCGATGCATAA
back to top