mRNA_M-pyrifera_M_contig8871.20598.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8871.20598.1
Unique NamemRNA_M-pyrifera_M_contig8871.20598.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8871.20598.1 vs. uniprot
Match: A0A6H5KX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX21_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.550e-19
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 REIKVQLGKTDEEMETDPLLSTANLMRFDPLAEEGEF-DLIMQKR-GAIDAAKDNIRMKGDGHEMVIRTDSTSADRLKEAGMPLE 252
            RE+KV+LGKTD EM++DP LS  NLM FDP AE+G+  +LI Q+R G+IDA  +N+RMK  GHE V  TDST AD  + AG+PL+
Sbjct:  556 REVKVELGKTDAEMDSDPSLSMPNLMTFDPDAEDGDPPELIKQERPGSIDAGGENLRMKS-GHEKVFTTDSTPADMARAAGVPLD 639
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BLAST of mRNA_M-pyrifera_M_contig8871.20598.1 vs. uniprot
Match: D7FN96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN96_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.240e-18
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    4 REIKVQLGKTDEEMETDPLLSTANLMRFDPLAEEGEF-DLIMQKR-GAIDAAKDNIRMKGDGHEMVIRTDSTSADRLKEAGMP 246
            RE+KV+LGKTD EM +DP LS +NLM FDP AE+G+  +L+ Q+R G+IDA  +N+RMK  GHE V+ TDST AD  + AG+P
Sbjct:  353 REVKVELGKTDAEMNSDPSLSMSNLMTFDPDAEDGDPPELVKQERPGSIDAGGENLRMKS-GHEKVVTTDSTPADMARAAGVP 434
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8871.20598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX21_9PHAE6.550e-1958.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN96_ECTSI2.240e-1857.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8871contigM-pyrifera_M_contig8871:6019..7771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003470.1
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.4166641-CDS-M-pyrifera_M_contig8871:6018..61441622816797.4166641-CDS-M-pyrifera_M_contig8871:6018..6144Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8871 6019..6144 -
1692278184.3430548-CDS-M-pyrifera_M_contig8871:6018..61441692278184.3430548-CDS-M-pyrifera_M_contig8871:6018..6144Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8871 6019..6144 -
1622816797.43005-CDS-M-pyrifera_M_contig8871:7642..77711622816797.43005-CDS-M-pyrifera_M_contig8871:7642..7771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8871 7643..7771 -
1692278184.3545682-CDS-M-pyrifera_M_contig8871:7642..77711692278184.3545682-CDS-M-pyrifera_M_contig8871:7642..7771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8871 7643..7771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8871.20598.1prot_M-pyrifera_M_contig8871.20598.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8871 6019..7771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8871.20598.1

>prot_M-pyrifera_M_contig8871.20598.1 ID=prot_M-pyrifera_M_contig8871.20598.1|Name=mRNA_M-pyrifera_M_contig8871.20598.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MREIKVQLGKTDEEMETDPLLSTANLMRFDPLAEEGEFDLIMQKRGAIDA
AKDNIRMKGDGHEMVIRTDSTSADRLKEAGMPLEV
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mRNA from alignment at M-pyrifera_M_contig8871:6019..7771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8871.20598.1 ID=mRNA_M-pyrifera_M_contig8871.20598.1|Name=mRNA_M-pyrifera_M_contig8871.20598.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1753bp|location=Sequence derived from alignment at M-pyrifera_M_contig8871:6019..7771- (Macrocystis pyrifera P11B4 male)
ATGCGCGAGATCAAGGTTCAGCTGGGCAAGACCGACGAGGAAATGGAGAC
AGACCCCTTGCTCTCGACGGCGAATCTTATGCGATTCGATCCGCTCGCAG
AAGAAGGGGAGTTCGACCTCATCATGCAGGTAGGATGATTAGTATTGGGA
CATCGGATATCGATATCGGCATCGTGTTCGATACGATACCGATCAACTAA
CAAAACGATTCAACACGATTTCGACAGTTGATACTATATCGAAGCTTTCG
TTCAGAATATATCAGCAAAAAAACACGGGGGATGCCTAGGGATGGAGAAC
AAAACACGTTCGATATTGTGTTTTTGCCACTAATGGTGATGATACTGGTA
CAGCAGTAGATACGGCAGAACACGGTAGAGGGATATACAGGAACTCTTTC
CCTCGCCCAGAAACTGACACTGGCTTTGAGAAACATGGTTAGCTTCACCC
TTTTGAGGGCAAACTGCAATACCGTTTGGGGCACAAACTATTTGAAATTA
GAGTGTTTTGTCCCCAAAACGGGACTGCACCTCTGCTCTAAAAGAATCAG
TCAAGTCGATGAACAATCCCATGCCTTGAGCATACAGTAAGTCATGCTGT
ACTACTATAAGTAAAGTATTCATGAGATTCCAAGGACTTCGGGTGCTGTG
CAATACTTTTGTGAGTTAAGGAGCACCCCGTGAGTCAGAAATGATCTGGC
CATGAAGTGCTACAGGCTGCAGTAATGTACCTCTACTGCATCAATAGGAC
GCGTCGGTAAGGATGTTGACGGTGATGATGCTGATGATGGTGATGATCAC
GATGGTGGTGGTGGTGGTGATGGTGGTGGTGATGATGCAGTTGCTGTTGC
TGCTGCTGCTGCTGGTGACAATGATAATGATGGTCATGATGATTTCTGTT
ACAACATTATTCATCGCAGTTGACGTGTAGTTATGCCTCATCATGCAGTA
TCTTTATAAAGTGCCTGATACGCGAGAGCACCTATGACCTTGAGAGTCGA
CCCTTTTAGGACTGCAGCCCTGTTTTGGGCGCAAGCTATTAATACCTATA
ATTTGTCTGGTTTTGTCCCAATTACAGGACTGCAGTCCTAAACGAGTCAA
GACTCCAAGTTTCGCAAAAAACAAAAGAAGCCCATTGTGCTATAGTGAAA
CTACCAGTGTAGGACATACCCTACAGTACCTCACACACCACTCTGGGTGG
AAATATAGTGAGCGTTTGGACTCTATTACGGTGGTCCATAGTTAATAGGA
CCCATGGCATACATAAAAACCTATATATTTACCTATTTTTACTGAGAATA
TTTGGTCCTATTTACAATGGACCGCCGTAATATTATGGATATATGACGGG
TATGATATCACCGTCCAAAGTGTTTGTACTTTGGGCCTGGAATGTTTACT
CCGTGTAGACTACTTCCATCCACTTGCAGTACGTTGCGTCTGGATGCGAT
CAGGGTGGCCGGTGGGAATTTCGCCTGCTAGGACTGCACTCCCGAACCGT
GGAAATATTAATAAATTTGTCTTTTTGCACAGCAGTGCAGTGTTAAATAG
TAAAGTGATGAAGTGGCGTCGCGTGGTACCCATGCCGACTTCCCCCCGCC
ATCCCCTCTTTGTCTACCACTTTGCAGAAGAGGGGGGCGATTGACGCTGC
AAAGGACAACATACGGATGAAGGGGGACGGCCACGAGATGGTCATCAGGA
CGGACTCCACATCCGCAGACCGCTTGAAGGAAGCTGGGATGCCGCTCGAG
GTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8871:6019..7771-

>mRNA_M-pyrifera_M_contig8871.20598.1 ID=mRNA_M-pyrifera_M_contig8871.20598.1|Name=mRNA_M-pyrifera_M_contig8871.20598.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig8871:6019..7771- (Macrocystis pyrifera P11B4 male)
ATGCGCGAGATCAAGGTTCAGCTGGGCAAGACCGACGAGGAAATGGAGAC
AGACCCCTTGCTCTCGACGGCGAATCTTATGCGATTCGATCCGCTCGCAG
AAGAAGGGGAGTTCGACCTCATCATGCAGATGCGCGAGATCAAGGTTCAG
CTGGGCAAGACCGACGAGGAAATGGAGACAGACCCCTTGCTCTCGACGGC
GAATCTTATGCGATTCGATCCGCTCGCAGAAGAAGGGGAGTTCGACCTCA
TCATGCAGAAGAGGGGGGCGATTGACGCTGCAAAGGACAACATACGGATG
AAGGGGGACGGCCACGAGATGGTCATCAGGACGGACTCCACATCCGCAGA
CCGCTTGAAGGAAGCTGGGATGCCGCTCGAGGTGAAGAGGGGGGCGATTG
ACGCTGCAAAGGACAACATACGGATGAAGGGGGACGGCCACGAGATGGTC
ATCAGGACGGACTCCACATCCGCAGACCGCTTGAAGGAAGCTGGGATGCC
GCTCGAGGTG
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