mRNA_M-pyrifera_M_contig88694.20594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88694.20594.1
Unique NamemRNA_M-pyrifera_M_contig88694.20594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: UPI002007A052 (Ribosomal lysine N-methyltransferase 4 n=1 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI002007A052)

HSP 1 Score: 58.9 bits (141), Expect = 2.060e-8
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELD 216
            RP+ AGEE+ N YGPL +SELL +YG+V     R+D V+  W  V     A +GLS  ++E   Q LD
Sbjct:  255 RPIKAGEEILNYYGPLPNSELLRRYGYVTERHVRYDVVEIPWDTVLNAAVAQLGLSVDTVEKALQRLD 322
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: UPI0015C38118 (UV DNA damage endonuclease n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C38118)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-8
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELD 216
            RP+ AG+E+ N YGP  +SELL +YG+V     RHD V+  W +V    A+ +G+S+  L  + + LD
Sbjct:  787 RPIKAGDEILNYYGPHPNSELLRRYGYVTDKHARHDVVELPWSDVERAMASELGVSTDKLSGIRKGLD 854
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: A0A369GRF0_9HYPO (SET domain-containing protein n=1 Tax=Ophiocordyceps camponoti-leonardi (nom. inval.) TaxID=2039875 RepID=A0A369GRF0_9HYPO)

HSP 1 Score: 58.2 bits (139), Expect = 3.850e-8
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELDVD 222
            RP+ AGEE+ N YGP  +SELL +YG+V     R+D V+  W  V   TAA + LS   L+     LD++
Sbjct:  277 RPIKAGEEILNYYGPHPNSELLRRYGYVTAKHARYDVVEIPWTTVEEATAAHLNLSPDQLDKARDSLDLE 346
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: A0A084QJV1_STAC4 (SET domain-containing protein n=3 Tax=Stachybotrys TaxID=74721 RepID=A0A084QJV1_STAC4)

HSP 1 Score: 57.8 bits (138), Expect = 5.260e-8
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELDVD 222
            RP+ AGEE+ N YGP  +SELL +YG+V     R+D V+  W+ V    A  +GLS  +L  +  +LD D
Sbjct:  262 RPIKAGEEILNYYGPHPNSELLRRYGYVTSKHTRYDVVEIPWEIVENALAQHLGLSKDALNKVRAKLDDD 331
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: A0A2N6NS79_BEABA (Ribosomal lysine N-methyltransferase 4 n=5 Tax=Beauveria TaxID=5581 RepID=A0A2N6NS79_BEABA)

HSP 1 Score: 57.8 bits (138), Expect = 5.270e-8
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELDVD 222
            RP+ AGEE+ N YGP  +SELL +YG+V    +R+D V+  W+ V   T + +GLS  +   +  +LD D
Sbjct:  267 RPIKAGEEILNYYGPHPNSELLRRYGYVTERHSRYDVVEIPWELVEAATVSQLGLSQEAWAKVRGQLDED 336
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: UPI001D04BFC0 (SET domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D04BFC0)

HSP 1 Score: 57.4 bits (137), Expect = 7.190e-8
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEA 198
            RP+ AGEE+ N YGP  +SELL +YG+V    +R+D V+  W  V    AA + +S  +LEA
Sbjct:  256 RPIRAGEEILNYYGPHPNSELLRRYGYVTDNHSRYDVVEIPWDVVEGAAAAQLNISRDALEA 317
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: A0A2C6ACA2_9HYPO (N-lysine methyltransferase SETD6 n=1 Tax=Cordyceps sp. RAO-2017 TaxID=2004951 RepID=A0A2C6ACA2_9HYPO)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-7
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLE 195
            RP+ AGEE+ N YGP  +SELL +YG+V    +R+D V+  W  V    AA +GLS   +E
Sbjct:  235 RPIKAGEEILNYYGPHPNSELLRRYGYVTDKHSRYDVVEIAWSVVEGAAAAHLGLSEDVVE 295
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BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: N4VER0_COLOR (Ribosomal lysine N-methyltransferase 4 n=4 Tax=Colletotrichum orbiculare species complex TaxID=2707354 RepID=N4VER0_COLOR)

HSP 1 Score: 56.2 bits (134), Expect = 1.840e-7
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELD 216
            RP++AGEE+ N YGP  +SELL +YG+     +R+D V+  W+ V      A+GLS    + +A++ D
Sbjct:  261 RPISAGEEILNYYGPHPNSELLRRYGYATPKHSRYDVVEIPWETVQASVTEALGLSDDVWKQVAEDFD 328
[Close]
BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: A0A428TU59_9HYPO (Ribosomal lysine N-methyltransferase 4 n=7 Tax=Fusarium solani species complex TaxID=232080 RepID=A0A428TU59_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 1.840e-7
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELD 216
            RP+ AGEE+FN YGP  +SELL +YG+V    +R+D V+  W  V        G+S   LE L  +L+
Sbjct:  259 RPIKAGEEIFNYYGPHPNSELLRRYGYVTERHSRYDVVEIPWDVVESVMRLNFGISGQVLERLRHDLE 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Match: A0A8K0VLF8_9HYPO (UV-endonuclease UvdE-domain-containing protein n=2 Tax=Ilyonectria TaxID=1079112 RepID=A0A8K0VLF8_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 1.890e-7
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   13 RPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVSWCTAAAVGLSSASLEALAQELD 216
            RP+ AGEE+ N YGP  +SELL +YG+V    +R+D V+  W  V        G+ S +L+ L  EL+
Sbjct:  813 RPIKAGEEILNYYGPHPNSELLRRYGYVTERHSRYDVVEIPWDVVESAITTHFGIPSTTLDKLRNELE 880
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88694.20594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI002007A0522.060e-845.59Ribosomal lysine N-methyltransferase 4 n=1 Tax=Pur... [more]
UPI0015C381182.120e-841.18UV DNA damage endonuclease n=1 Tax=Geosmithia morb... [more]
A0A369GRF0_9HYPO3.850e-842.86SET domain-containing protein n=1 Tax=Ophiocordyce... [more]
A0A084QJV1_STAC45.260e-842.86SET domain-containing protein n=3 Tax=Stachybotrys... [more]
A0A2N6NS79_BEABA5.270e-841.43Ribosomal lysine N-methyltransferase 4 n=5 Tax=Bea... [more]
UPI001D04BFC07.190e-845.16SET domain-containing protein n=1 Tax=Hirsutella r... [more]
A0A2C6ACA2_9HYPO1.340e-745.90N-lysine methyltransferase SETD6 n=1 Tax=Cordyceps... [more]
N4VER0_COLOR1.840e-739.71Ribosomal lysine N-methyltransferase 4 n=4 Tax=Col... [more]
A0A428TU59_9HYPO1.840e-742.65Ribosomal lysine N-methyltransferase 4 n=7 Tax=Fus... [more]
A0A8K0VLF8_9HYPO1.890e-741.18UV-endonuclease UvdE-domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88694contigM-pyrifera_M_contig88694:469..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue7.9e-08
Seed eggNOG ortholog63577.G9P4I3
Preferred nameRMS1
KEGG koko:K05302
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018026,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0033554,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043555,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1990497,GO:2000112,GO:2000765
EggNOG free text desc.UV-endonuclease UvdE
EggNOG OGs212RI@147550,38CA9@33154,3NWQB@4751,3QKJ8@4890,3TT67@5125,3TZ2W@5129,KOG1338@1,KOG1338@2759
COG Functional cat.S
Best tax levelHypocreaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.2695842-CDS-M-pyrifera_M_contig88694:468..6901622816797.2695842-CDS-M-pyrifera_M_contig88694:468..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88694 469..690 -
1692278184.2742412-CDS-M-pyrifera_M_contig88694:468..6901692278184.2742412-CDS-M-pyrifera_M_contig88694:468..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88694 469..690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88694.20594.1prot_M-pyrifera_M_contig88694.20594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88694 469..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88694.20594.1

>prot_M-pyrifera_M_contig88694.20594.1 ID=prot_M-pyrifera_M_contig88694.20594.1|Name=mRNA_M-pyrifera_M_contig88694.20594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MRTTRPVAAGEELFNTYGPLADSELLWKYGFVEGGDNRHDRVKWRWQEVS
WCTAAAVGLSSASLEALAQELDVD
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mRNA from alignment at M-pyrifera_M_contig88694:469..690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88694.20594.1 ID=mRNA_M-pyrifera_M_contig88694.20594.1|Name=mRNA_M-pyrifera_M_contig88694.20594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig88694:469..690- (Macrocystis pyrifera P11B4 male)
ATGAGGACCACGCGACCTGTGGCTGCTGGCGAGGAACTCTTCAATACCTA
CGGCCCTCTCGCTGACTCTGAGCTCCTTTGGAAGTATGGCTTCGTGGAAG
GAGGCGACAACAGACACGACCGCGTGAAGTGGAGGTGGCAGGAGGTGAGT
TGGTGTACTGCTGCTGCTGTGGGCCTCTCTTCTGCCTCACTCGAGGCTCT
CGCTCAAGAGCTCGACGTCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88694:469..690-

>mRNA_M-pyrifera_M_contig88694.20594.1 ID=mRNA_M-pyrifera_M_contig88694.20594.1|Name=mRNA_M-pyrifera_M_contig88694.20594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig88694:469..690- (Macrocystis pyrifera P11B4 male)
ATGAGGACCACGCGACCTGTGGCTGCTGGCGAGGAACTCTTCAATACCTA
CGGCCCTCTCGCTGACTCTGAGCTCCTTTGGAAGTATGGCTTCGTGGAAG
GAGGCGACAACAGACACGACCGCGTGAAGTGGAGGTGGCAGGAGGTGAGT
TGGTGTACTGCTGCTGCTGTGGGCCTCTCTTCTGCCTCACTCGAGGCTCT
CGCTCAAGAGCTCGACGTCGATATGAGGACCACGCGACCTGTGGCTGCTG
GCGAGGAACTCTTCAATACCTACGGCCCTCTCGCTGACTCTGAGCTCCTT
TGGAAGTATGGCTTCGTGGAAGGAGGCGACAACAGACACGACCGCGTGAA
GTGGAGGTGGCAGGAGGTGAGTTGGTGTACTGCTGCTGCTGTGGGCCTCT
CTTCTGCCTCACTCGAGGCTCTCGCTCAAGAGCTCGACGTCGAT
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