mRNA_M-pyrifera_M_contig88690.20593.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88690.20593.1
Unique NamemRNA_M-pyrifera_M_contig88690.20593.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A151ZSG5_9MYCE (Soluble NSF attachment protein alpha isoform n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSG5_9MYCE)

HSP 1 Score: 105 bits (262), Expect = 2.060e-25
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   13 ERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESENDLENALEAYEAAADFYEGEGSTT 312
            + AG  + +A+ C  K    HD+AS+Y+NA+  +KK     AI CL+A + YYT+EGRF IAAK+QKE+AE YES  DLE A+ +Y+ AADFY+GE S T
Sbjct:   56 DAAGAAFQKASECYLKSGSKHDSASSYVNAAGCYKKGNVSDAIICLKAAIEYYTDEGRFGIAAKHQKEMAELYESIGDLEAAMSSYQQAADFYDGENSQT 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: UPI0006C9B0A0 (alpha-soluble NSF attachment protein n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9B0A0)

HSP 1 Score: 94.4 bits (233), Expect = 4.480e-22
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 SRTGERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESEN-DLENALEAYEAAADFYEGEGSTT 312
            S+    AG  + +AA    K    HDAASNYI+A+N +KK+ +P A+ CL   +  YT+ GRF++AAK+ + IAE YE+E  DLE A++ YE AAD++ GE S +
Sbjct:   52 SKKWNEAGNSFCQAADLNSKAGSRHDAASNYIDAANCYKKSNAPEAVNCLLKAIEIYTDMGRFTMAAKHHQSIAEIYENEALDLERAVQHYEQAADYFRGEESNS 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A851ASV6_PICGY (SNAA protein (Fragment) n=1 Tax=Picathartes gymnocephalus TaxID=175131 RepID=A0A851ASV6_PICGY)

HSP 1 Score: 90.9 bits (224), Expect = 5.230e-21
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 SRTGERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESEN-DLENALEAYEAAADFYEGEGSTT 312
            ++   +AG  +  AA  Q ++   HDAA+N+++A N FKKA    AI CL   V  YT+ GRF+IAAK+   IAE YES+  D+E A+  YE AAD+Y+GE ST+
Sbjct:   28 AKNWSQAGAAFSRAAQLQLQLQSKHDAATNFVDAGNAFKKADPQEAINCLLRAVEIYTDMGRFTIAAKHHISIAEIYESDLLDIEKAIAHYEQAADYYKGEESTS 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A0L0D4Q7_THETB (Alpha-soluble NSF attachment protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D4Q7_THETB)

HSP 1 Score: 93.2 bits (230), Expect = 8.860e-21
Identity = 44/103 (42.72%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:    1 SRTGERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESENDLENALEAYEAAADFYEGEGST 309
            +R  + AG+ + +AA    K+   HD AS+++ A+  ++K ++ +A+ CLQ  V  +T  GRF++AAK+ K+IAE YE + +LE+A+  YE+AA FYEGE ST
Sbjct:   47 ARKWDEAGDAFEKAAAMSAKLGEPHDEASDFVAAAGCYRKTQTGKAVTCLQRAVDLFTNMGRFTVAAKHTKDIAEMYEEDQELESAINFYESAAQFYEGENST 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A1J1IFL4_9DIPT (CLUMA_CG012178, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IFL4_9DIPT)

HSP 1 Score: 92.4 bits (228), Expect = 1.880e-20
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   13 ERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESE-NDLENALEAYEAAADFYEGEGSTT 312
            ++AG  +  AA+   +    HDAA+NY++ASN FKK+    A+ CL   +  YT+ GRF++AAK+ + IAE YE+E NDL  A++ YE AAD+++GE S T
Sbjct:   57 QQAGSAFCSAANLHAQAGSRHDAATNYVDASNCFKKSDPNEAVSCLMKAIDIYTDMGRFTMAAKHHQTIAEMYENEANDLNRAVQHYEQAADYFKGEESNT 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A7R8UJ98_HERIL (Hypothetical protein n=2 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UJ98_HERIL)

HSP 1 Score: 92.0 bits (227), Expect = 2.590e-20
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    1 SRTGERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESE-NDLENALEAYEAAADFYEGEGS 306
            S+   +AG+ + EAA+   K    HDAASNY++ASN +KK     A+ CL   +  YT+ GRF++AAK+ + IAE YE++ N LE A++ YE AAD+++GE S
Sbjct:   52 SKNWAKAGQAFCEAANLHAKAGSRHDAASNYVDASNCYKKNDLEEAVACLLKAIEIYTDMGRFTMAAKHHQSIAEMYEADPNGLERAVQHYEQAADYFKGEES 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A8C2Z4H9_CYCLU (N-ethylmaleimide-sensitive factor attachment protein, alpha b n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2Z4H9_CYCLU)

HSP 1 Score: 91.7 bits (226), Expect = 4.560e-20
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   19 AGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESEN-DLENALEAYEAAADFYEGEGSTT 312
            AG  + +AAH   ++   HDAA+N+I+A N FKKA    AI CL   +  YT+ GRF+IAAK+   IAE YE+E  D++ A+  YE AAD+Y+GE ST+
Sbjct:   73 AGNAFSQAAHLHLQMQSKHDAATNFIDAGNAFKKADPQEAINCLNRAIEIYTDMGRFTIAAKHHITIAEIYETEMVDIDKAIAHYEQAADYYKGEESTS 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A7L3BCT8_9AVES (SNAA protein (Fragment) n=1 Tax=Syrrhaptes paradoxus TaxID=302527 RepID=A0A7L3BCT8_9AVES)

HSP 1 Score: 88.2 bits (217), Expect = 6.370e-20
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:   19 AGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESEN-DLENALEAYEAAADFYEGEGSTT 312
            AG  + +AA    ++   HDAA+N+++A N FKKA    AI CL   +  YT+ GRF+IAAK+   IAE YESE  D+E A+  YE AAD+Y+GE S +
Sbjct:    2 AGNAFCQAAQLHLQLQSKHDAATNFVDAGNAFKKADPQEAINCLIRAIEIYTDMGRFTIAAKHHISIAEIYESELVDIEKAIAHYEQAADYYKGEESNS 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: A0A672J050_SALFA (N-ethylmaleimide-sensitive factor attachment protein, alpha b n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A672J050_SALFA)

HSP 1 Score: 91.3 bits (225), Expect = 6.450e-20
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   19 AGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESEN-DLENALEAYEAAADFYEGEGSTT 312
            AG  + +AAH   ++   HDAA+N+I+A N FKKA    AI CL   +  YT+ GRF+IAAK+   IAE YE+E  D++ A+  YE AAD+Y+GE ST+
Sbjct:   74 AGNAFSQAAHLHLQMQSKHDAATNFIDAGNAFKKADPQEAINCLNRAIEIYTDMGRFTIAAKHHISIAEIYETELVDVDKAIAHYEQAADYYKGEESTS 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Match: U5EZ97_9DIPT (Protein required for fusion of vesicles in vesicular transport alpha-snap n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EZ97_9DIPT)

HSP 1 Score: 90.9 bits (224), Expect = 7.190e-20
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   16 RAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECLQAGVAYYTEEGRFSIAAKYQKEIAEHYESE-NDLENALEAYEAAADFYEGEGSTT 312
            +AG  + EAA+   K    HDAA+NY++ASN +KK     A+ CL   +  YT+ GRF++AAK+ + IAE +E++ ND++ A++ YE AAD++ GE ST+
Sbjct:   58 KAGSAFFEAANLHAKAGSRHDAATNYVDASNCYKKTDINEAVACLLKAIDIYTDMGRFTLAAKHHQSIAEVFETDGNDIQRAIQHYEQAADYFRGEESTS 157
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88690.20593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151ZSG5_9MYCE2.060e-2552.00Soluble NSF attachment protein alpha isoform n=1 T... [more]
UPI0006C9B0A04.480e-2245.71alpha-soluble NSF attachment protein n=1 Tax=Copid... [more]
A0A851ASV6_PICGY5.230e-2146.67SNAA protein (Fragment) n=1 Tax=Picathartes gymnoc... [more]
A0A0L0D4Q7_THETB8.860e-2142.72Alpha-soluble NSF attachment protein n=1 Tax=Theca... [more]
A0A1J1IFL4_9DIPT1.880e-2045.54CLUMA_CG012178, isoform A n=1 Tax=Clunio marinus T... [more]
A0A7R8UJ98_HERIL2.590e-2045.63Hypothetical protein n=2 Tax=Hermetia illucens Tax... [more]
A0A8C2Z4H9_CYCLU4.560e-2048.48N-ethylmaleimide-sensitive factor attachment prote... [more]
A0A7L3BCT8_9AVES6.370e-2047.47SNAA protein (Fragment) n=1 Tax=Syrrhaptes paradox... [more]
A0A672J050_SALFA6.450e-2048.48N-ethylmaleimide-sensitive factor attachment prote... [more]
U5EZ97_9DIPT7.190e-2044.00Protein required for fusion of vesicles in vesicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88690contigM-pyrifera_M_contig88690:115..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.8
Seed ortholog evalue3.1e-18
Seed eggNOG ortholog4006.Lus10032835
KEGG koko:K15296
KEGG Pathwayko04138,ko04721,map04138,map04721
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0003674,GO:0005483,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0005911,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009506,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0019905,GO:0022411,GO:0030054,GO:0031090,GO:0031201,GO:0032984,GO:0032991,GO:0033036,GO:0034613,GO:0035494,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043624,GO:0043933,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.Alpha-soluble nsf attachment protein
EggNOG OGs37HIJ@33090,3GBY5@35493,4JKQU@91835,KOG1586@1,KOG1586@2759
COG Functional cat.U
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.2156603-CDS-M-pyrifera_M_contig88690:114..2931622816797.2156603-CDS-M-pyrifera_M_contig88690:114..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88690 115..293 -
1692278184.2446303-CDS-M-pyrifera_M_contig88690:114..2931692278184.2446303-CDS-M-pyrifera_M_contig88690:114..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88690 115..293 -
1622816797.2333386-CDS-M-pyrifera_M_contig88690:625..7581622816797.2333386-CDS-M-pyrifera_M_contig88690:625..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88690 626..758 -
1692278184.2632387-CDS-M-pyrifera_M_contig88690:625..7581692278184.2632387-CDS-M-pyrifera_M_contig88690:625..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88690 626..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88690.20593.1prot_M-pyrifera_M_contig88690.20593.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88690 115..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88690.20593.1

>prot_M-pyrifera_M_contig88690.20593.1 ID=prot_M-pyrifera_M_contig88690.20593.1|Name=mRNA_M-pyrifera_M_contig88690.20593.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
SRTGERAGELYIEAAHCQQKINYGHDAASNYINASNMFKKAKSPRAIECL
QAGVAYYTEEGRFSIAAKYQKEIAEHYESENDLENALEAYEAAADFYEGE
GSTT
back to top

mRNA from alignment at M-pyrifera_M_contig88690:115..758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88690.20593.1 ID=mRNA_M-pyrifera_M_contig88690.20593.1|Name=mRNA_M-pyrifera_M_contig88690.20593.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=644bp|location=Sequence derived from alignment at M-pyrifera_M_contig88690:115..758- (Macrocystis pyrifera P11B4 male)
AGCCGTACAGGGGAACGCGCTGGCGAGCTGTACATTGAGGCAGCGCATTG
CCAACAGAAGATCAACTACGGCCACGACGCGGCGTCGAACTACATCAACG
CCTCCAACATGTTTAAGAAGGCCAAGTCACCCAGTACGCCCGCACCTCAC
TTGCCATTGCACTCTCCGGCTTTCGTGCATGTCAGCAGGCCACGCATCTC
TCTGACTGTCATGATGATGTGTCTGTCTTCCTTTCTATTCATTCACACTC
GCACATTCGCTTGCTCCCATTCACTTAAAACACATACACGTACCCACGCA
CGCGCACGCGCACGCACGCGCACGCACGCACACACACAAACAACACACAC
ACAATCTCTCTTTCCTCAAACAAGCTTCCTGTCTCTCTCTCAGTCTCTCT
ACCTTACATTGTCATCTTTCTGCCTGGGCCTTTTCTTGCCAGTGGTCATT
CTTACACAGCACCAGGGGCGATTGAATGCCTCCAGGCAGGTGTCGCATAC
TACACGGAAGAAGGACGCTTCAGCATTGCTGCAAAGTACCAGAAGGAAAT
TGCAGAGCACTACGAGTCTGAGAATGACTTGGAGAACGCACTCGAGGCCT
ACGAAGCCGCCGCCGACTTCTACGAGGGCGAGGGATCCACTACG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88690:115..758-

>mRNA_M-pyrifera_M_contig88690.20593.1 ID=mRNA_M-pyrifera_M_contig88690.20593.1|Name=mRNA_M-pyrifera_M_contig88690.20593.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig88690:115..758- (Macrocystis pyrifera P11B4 male)
AGCCGTACAGGGGAACGCGCTGGCGAGCTGTACATTGAGGCAGCGCATTG
CCAACAGAAGATCAACTACGGCCACGACGCGGCGTCGAACTACATCAACG
CCTCCAACATGTTTAAGAAGGCCAAGTCACCCAAGCCGTACAGGGGAACG
CGCTGGCGAGCTGTACATTGAGGCAGCGCATTGCCAACAGAAGATCAACT
ACGGCCACGACGCGGCGTCGAACTACATCAACGCCTCCAACATGTTTAAG
AAGGCCAAGTCACCCAGGGCGATTGAATGCCTCCAGGCAGGTGTCGCATA
CTACACGGAAGAAGGACGCTTCAGCATTGCTGCAAAGTACCAGAAGGAAA
TTGCAGAGCACTACGAGTCTGAGAATGACTTGGAGAACGCACTCGAGGCC
TACGAAGCCGCCGCCGACTTCTACGAGGGCGAGGGATCCACTACGGGGCG
ATTGAATGCCTCCAGGCAGGTGTCGCATACTACACGGAAGAAGGACGCTT
CAGCATTGCTGCAAAGTACCAGAAGGAAATTGCAGAGCACTACGAGTCTG
AGAATGACTTGGAGAACGCACTCGAGGCCTACGAAGCCGCCGCCGACTTC
TACGAGGGCGAGGGATCCACTACG
back to top