mRNA_M-pyrifera_M_contig88686.20592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88686.20592.1
Unique NamemRNA_M-pyrifera_M_contig88686.20592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A6H5L2C7_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2C7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.410e-40
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQVHGFPKVMCVLTHLD+FDN K LRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPK E
Sbjct:  155 FGFEMETFEFLNILQVHGFPKVMCVLTHLDRFDNVKALRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTE 228
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A1Y1VP38_9FUNG (DUF663-domain-containing protein n=5 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VP38_9FUNG)

HSP 1 Score: 125 bits (314), Expect = 8.330e-32
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQVHGFPK+M VLTHLDKF N K LR TKK+LK RFWTE+Y GAK+F + G INGKYPKNE
Sbjct:  147 FGFEMETFEFLNILQVHGFPKIMGVLTHLDKFKNNKKLRNTKKQLKHRFWTEIYQGAKLFYLSGIINGKYPKNE 220
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: I1CTC2_RHIO9 (Bms1-type G domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CTC2_RHIO9)

HSP 1 Score: 120 bits (301), Expect = 4.670e-31
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQ HGFPKVM VLTHLDKF N K+LRATKK+LK RFWTE+Y GAK+F + G ING+YP  E
Sbjct:  151 FGFEMETFEFLNILQSHGFPKVMGVLTHLDKFRNNKSLRATKKRLKDRFWTEIYQGAKLFYLSGIINGRYPNLE 224
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A8H7PGY8_MORIS (Bms1-type G domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PGY8_MORIS)

HSP 1 Score: 123 bits (308), Expect = 5.380e-31
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQ HGFPK+M VLTHLDKF N KTLR TKK+LK+RFWTE+Y GAK+F + G INGKYP  E
Sbjct:  157 FGFEMETFEFLNILQSHGFPKIMGVLTHLDKFKNNKTLRTTKKRLKSRFWTEIYQGAKLFYLSGVINGKYPNME 230
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: UPI0000452A59 (hypothetical protein n=1 Tax=Cryptosporidium hominis (strain TU502) TaxID=353151 RepID=UPI0000452A59)

HSP 1 Score: 114 bits (284), Expect = 7.300e-31
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            F FEMETFEFLN+LQVHGFP+V+ VLTHLDK ++ KTLR TKKKLK RFWTE+YNGAK+F + G  NG Y K E
Sbjct:   22 FSFEMETFEFLNILQVHGFPRVLGVLTHLDKIEDNKTLRKTKKKLKNRFWTEIYNGAKLFYLSGIHNGFYNKTE 95
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A261XUD8_9FUNG (Bms1-type G domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUD8_9FUNG)

HSP 1 Score: 122 bits (306), Expect = 1.000e-30
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQVHGFPK+M VLTHLDKF N KTL+ TKK+LK RFWTE+Y GAK+F + G ING+YP  E
Sbjct:  148 FGFEMETFEFLNVLQVHGFPKIMGVLTHLDKFRNNKTLKTTKKRLKHRFWTEIYQGAKLFYLSGVINGRYPNTE 221
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A8H7UNE9_9FUNG (Bms1-type G domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UNE9_9FUNG)

HSP 1 Score: 122 bits (305), Expect = 1.370e-30
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQ HGFPK+M VLTHLDKF N KTLR TKK+LK RFWTE+Y GAK+F + G INGKYP  E
Sbjct:  150 FGFEMETFEFLNILQSHGFPKIMGVLTHLDKFKNNKTLRTTKKRLKHRFWTEIYQGAKLFYLSGVINGKYPNME 223
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A077WXI3_9FUNG (Bms1-type G domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WXI3_9FUNG)

HSP 1 Score: 121 bits (304), Expect = 1.870e-30
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQ HGFPKVM VLTHLDKF N K LRATKK+LK RFWTE+Y GAK+F + G ING+YP  E
Sbjct:  156 FGFEMETFEFLNILQAHGFPKVMGVLTHLDKFRNNKKLRATKKRLKHRFWTEIYQGAKLFYLSGVINGRYPNQE 229
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A6P9B6E6_PANGU (ribosome biogenesis protein BMS1 homolog n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9B6E6_PANGU)

HSP 1 Score: 113 bits (282), Expect = 2.310e-30
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+ QVHGFPK+M VLTHLD F N K LR TKK+LK RFWTEVY GAK+F + G ++G Y K E
Sbjct:   54 FGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKNNKQLRKTKKRLKHRFWTEVYQGAKLFYLSGMVHGDYQKQE 127
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BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Match: A0A8H7RNG1_9FUNG (Bms1-type G domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RNG1_9FUNG)

HSP 1 Score: 121 bits (303), Expect = 2.550e-30
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 FGFEMETFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKNE 222
            FGFEMETFEFLN+LQ HGFPKVM VLTHLDKF N KTL+ TKK+LK RFWTE+Y GAK+F + G INGKYP  E
Sbjct:  151 FGFEMETFEFLNILQSHGFPKVMGVLTHLDKFRNNKTLKTTKKRLKNRFWTEIYQGAKLFYLSGIINGKYPNME 224
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88686.20592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2C7_9PHAE1.410e-4093.24Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A1Y1VP38_9FUNG8.330e-3278.38DUF663-domain-containing protein n=5 Tax=Neocallim... [more]
I1CTC2_RHIO94.670e-3175.68Bms1-type G domain-containing protein n=1 Tax=Rhiz... [more]
A0A8H7PGY8_MORIS5.380e-3175.68Bms1-type G domain-containing protein n=1 Tax=Mort... [more]
UPI0000452A597.300e-3171.62hypothetical protein n=1 Tax=Cryptosporidium homin... [more]
A0A261XUD8_9FUNG1.000e-3074.32Bms1-type G domain-containing protein n=1 Tax=Bifi... [more]
A0A8H7UNE9_9FUNG1.370e-3075.68Bms1-type G domain-containing protein n=1 Tax=Umbe... [more]
A0A077WXI3_9FUNG1.870e-3075.68Bms1-type G domain-containing protein n=2 Tax=Lich... [more]
A0A6P9B6E6_PANGU2.310e-3070.27ribosome biogenesis protein BMS1 homolog n=1 Tax=P... [more]
A0A8H7RNG1_9FUNG2.550e-3075.68Bms1-type G domain-containing protein n=1 Tax=Muco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88686contigM-pyrifera_M_contig88686:337..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D7G454
Preferred nameBMS1
KEGG koko:K14569,ko:K15009
KEGG Pathwayko03008,ko04724,map03008,map04724
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0001959,GO:0001960,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009605,GO:0009607,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0016032,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018995,GO:0019001,GO:0019048,GO:0019049,GO:0019054,GO:0019056,GO:0019057,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019785,GO:0020012,GO:0022613,GO:0023051,GO:0023057,GO:0030430,GO:0030490,GO:0030515,GO:0030682,GO:0030683,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034248,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0035821,GO:0036094,GO:0039502,GO:0039503,GO:0039506,GO:0039507,GO:0039519,GO:0039520,GO:0039579,GO:0039604,GO:0039606,GO:0039611,GO:0039644,GO:0039648,GO:0039653,GO:0039656,GO:0039657,GO:0039690,GO:0039694,GO:0042025,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043656,GO:0043657,GO:0044003,GO:0044068,GO:0044073,GO:0044085,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044359,GO:0044362,GO:0044403,GO:0044413,GO:0044414,GO:0044415,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044501,GO:0045088,GO:0045824,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050690,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051817,GO:0051832,GO:0051833,GO:0051834,GO:0052026,GO:0052027,GO:0052029,GO:0052031,GO:0052037,GO:0052055,GO:0052056,GO:0052167,GO:0052170,GO:0052173,GO:0052200,GO:0052204,GO:0052205,GO:0052250,GO:0052255,GO:0052261,GO:0052306,GO:0052309,GO:0052312,GO:0052493,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0075109,GO:0075111,GO:0075112,GO:0075114,GO:0075136,GO:0075528,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.U3 snoRNA binding
EggNOG OGsCOG5192@1,KOG1951@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size222
Cds size210
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.167988-UTR-M-pyrifera_M_contig88686:336..3481622816797.167988-UTR-M-pyrifera_M_contig88686:336..348Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88686 337..348 +
1692278184.219069-UTR-M-pyrifera_M_contig88686:336..3481692278184.219069-UTR-M-pyrifera_M_contig88686:336..348Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88686 337..348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.1821635-CDS-M-pyrifera_M_contig88686:348..5581622816797.1821635-CDS-M-pyrifera_M_contig88686:348..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88686 349..558 +
1692278184.2323925-CDS-M-pyrifera_M_contig88686:348..5581692278184.2323925-CDS-M-pyrifera_M_contig88686:348..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88686 349..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88686.20592.1prot_M-pyrifera_M_contig88686.20592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88686 349..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88686.20592.1

>prot_M-pyrifera_M_contig88686.20592.1 ID=prot_M-pyrifera_M_contig88686.20592.1|Name=mRNA_M-pyrifera_M_contig88686.20592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
METFEFLNMLQVHGFPKVMCVLTHLDKFDNTKTLRATKKKLKTRFWTEVY
NGAKVFGMGGEINGKYPKNE
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mRNA from alignment at M-pyrifera_M_contig88686:337..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88686.20592.1 ID=mRNA_M-pyrifera_M_contig88686.20592.1|Name=mRNA_M-pyrifera_M_contig88686.20592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig88686:337..558+ (Macrocystis pyrifera P11B4 male)
TTCGGGTTCGAGATGGAAACCTTCGAGTTCCTGAACATGCTGCAGGTACA
CGGGTTTCCTAAGGTAATGTGCGTTCTGACCCACCTGGACAAGTTCGACA
ACACCAAGACCTTGAGGGCAACAAAGAAGAAGCTGAAGACGCGCTTCTGG
ACCGAGGTCTACAACGGCGCTAAGGTGTTCGGCATGGGGGGGGAGATCAA
CGGGAAGTACCCCAAGAACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88686:337..558+

>mRNA_M-pyrifera_M_contig88686.20592.1 ID=mRNA_M-pyrifera_M_contig88686.20592.1|Name=mRNA_M-pyrifera_M_contig88686.20592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig88686:337..558+ (Macrocystis pyrifera P11B4 male)
ATGGAAACCTTCGAGTTCCTGAACATGCTGCAGGTACACGGGTTTCCTAA
GGTAATGTGCGTTCTGACCCACCTGGACAAGTTCGACAACACCAAGACCT
TGAGGGCAACAAAGAAGAAGCTGAAGACGCGCTTCTGGACCGAGGTCTAC
AACGGCGCTAAGGTGTTCGGCATGGGGGGGGAGATCAACGGGAAGTACCC
CAAGAACGAGATGGAAACCTTCGAGTTCCTGAACATGCTGCAGGTACACG
GGTTTCCTAAGGTAATGTGCGTTCTGACCCACCTGGACAAGTTCGACAAC
ACCAAGACCTTGAGGGCAACAAAGAAGAAGCTGAAGACGCGCTTCTGGAC
CGAGGTCTACAACGGCGCTAAGGTGTTCGGCATGGGGGGGGAGATCAACG
GGAAGTACCCCAAGAACGAG
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