mRNA_M-pyrifera_M_contig88669.20590.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88669.20590.1
Unique NamemRNA_M-pyrifera_M_contig88669.20590.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: D7FQR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR2_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.030e-70
Identity = 121/142 (85.21%), Postives = 128/142 (90.14%), Query Frame = 1
Query:    1 YLSLA-GGKEALARRRRLEIIATKMLQRAFRRHLHTQWRLAEITRQRTIYLLRYRSAQVIQAMLRGRLGRRVFETEKWLVVVKKSSRLLIQHALNHYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI 423
            +LSL  GGKEALARRRRLE IA KMLQRAFRRHLH QWR +EI RQRTI LLRYRSAQVIQAMLRGRLGRRVFETEKWL VVKK+ RLLI+HAL+HYPHRKRVFWYKN AEE QLYADYR+L+ RTGFRPPR VVEQNIREI
Sbjct:  180 FLSLIQGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKSEIVRQRTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRIVVEQNIREI 321          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: A0A836CFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.730e-23
Identity = 61/143 (42.66%), Postives = 89/143 (62.24%), Query Frame = 1
Query:   10 LAGGKEALARRRRLEIIATKMLQRAFRRHLHTQWRLAEITRQRTIYLLRYRSAQVIQAMLRGRLGRRVFETEKWLVVVKKSSRLLIQHALNHYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREIGGYSL 438
            +A G   LA+R      A  ++QRA+R +L  +   A   R  T +LL YR A+ +QA++RGRLGRRV  T++ L V+      ++  AL+  P R+R+FWY   AE++ L+ADY  L++RTGFRPPR +VE NI E+   +L
Sbjct:  227 IAQGHVDLAQRAARRRGAAAVVQRAYRSYLAVRRDRALRVRLLTKHLLEYRCARAVQAVMRGRLGRRVARTQRHLRVLAGCHPAVLHWALHGCPERRRLFWYHIKAEQDLLFADYVALVERTGFRPPRGLVEANIAELAARAL 369          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: A0A7S2R5D9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5D9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.130e-22
Identity = 54/133 (40.60%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   25 EALARRRRLEIIATKMLQRAFRRHLHTQWRLAEITRQRTIYLLRYRSAQVIQAMLRGRLGRRVFETEKWLVVVKKSSRLLIQHALNHYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI 423
            EAL RR++  ++   ++QR++R +L  QW  AE  R++   +L YR+A +I+A++RGRLGRR  +T   + ++ ++   L+  A++   +++RVFWYK   + + LY DY +L +RTGF+PPR VVE+N++EI
Sbjct:  211 EALLRRQKKAVV---VIQRSYRFYLRRQWGRAERQRKKIRAMLEYRAASIIEALIRGRLGRRKAKTTVSIRIIMRAHSKLVSRAVSDRSYKRRVFWYKPD-QLKILYLDYVVLCERTGFQPPRVVVEENLKEI 339          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: F0YRG3_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRG3_AURAN)

HSP 1 Score: 82.8 bits (203), Expect = 4.780e-16
Identity = 55/138 (39.86%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   10 LAGGKEALARRRRLEIIATKMLQRAFRRHLHTQWRLAEITRQRTIYLLRYRSAQVIQAMLRGRLGRRVFETEKWLVVVKKSSRLLIQHALNHYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI 423
            +AG K  L ++ ++   A  +L R++R +L  Q   A  TR++    L+   A +I+A+LRGRLGRR   T  +L  V+K+  + +  AL+     K VFWYK+  +   L+ DY +L++RTGF PPR VVE NI+EI
Sbjct:  156 IAGSKAELIKQIKIRHAAAFLLGRSYRFYLRRQCARACRTREKVWAYLQRLCAAIIEAVLRGRLGRRKARTCAYLNYVQKAHPISLSKALSLGGEFK-VFWYKSKEQIRLLFNDYLVLVERTGFVPPRYVVEANIQEI 292          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: A0A8J2X0I4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0I4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 9.600e-16
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   16 GGKEALARRRRLEIIATKMLQRAFRRHLHTQWRLAEITRQRTIYLLRYRSAQVIQAMLRGRLGRRVFETEKWLVVVKKSSRLLIQHAL----------NHYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI 423
            G +EA+A+  +    A  +L   +R +L  Q   A  TRQ+  Y L +R A ++++  RGRLGRR   T + L  +K    + ++ AL                K+VFWY    + + LY DY +L QRTGF PPR +VEQNI EI
Sbjct:  160 GAREAMAKEMKKRKRAASLLIMVYRFYLRRQLARAARTRQKCRYYLYHRCASIVESAARGRLGRRRARTFENLRYIKNRHPISLKKALAQKFEVDKRTGESKRLKKVFWYHTKVQLDCLYRDYFILCQRTGFVPPRIIVEQNIEEI 305          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: A0A7S1U287_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U287_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.880e-9
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  196 RLGRRVFETEKWLVVVKKSSRLLIQHALN--------------HYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI 423
            RL +R  + E+ L V+K +  +++  AL                 P  K+VFWY+   E + LYADYR+L+ RTG++PP  +VE NI EI
Sbjct:   14 RLAQRALQVERDLKVIKGAHAIVLSRALRAKDFPLTAEDKARGEPPPPKKVFWYRTRQEVDLLYADYRILVDRTGYQPPLFMVENNIHEI 103          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: A0A7S1U265_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U265_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.300e-9
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  196 RLGRRVFETEKWLVVVKKSSRLLIQHALN--------------HYPHRKRVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI 423
            RL +R  + E+ L V+K +  +++  AL                 P  K+VFWY+   E + LYADYR+L+ RTG++PP  +VE NI EI
Sbjct:   14 RLAQRALQVERDLKVIKGAHAIVLSRALRAKDFPLTAEDKARGEPPPPKKVFWYRTRQEVDLLYADYRILVDRTGYQPPLFMVENNIHEI 103          
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Match: F0Y6T7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T7_AURAN)

HSP 1 Score: 53.1 bits (126), Expect = 2.890e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  301 RVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREI-GGYS 435
            +VFWYK+  +   L+ +Y +L +RTGF PPR VVE N+REI  GYS
Sbjct:  752 KVFWYKSKEQVRLLFENYLVLAERTGFLPPRYVVESNVREIVRGYS 797          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88669.20590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FQR2_ECTSI1.030e-7085.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFY4_9STRA9.730e-2342.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5D9_9STRA6.130e-2240.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YRG3_AURAN4.780e-1639.86Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
A0A8J2X0I4_9STRA9.600e-1636.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U287_9STRA6.880e-937.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U265_9STRA8.300e-937.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0Y6T7_AURAN2.890e-554.35Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88669contigM-pyrifera_M_contig88669:120..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue5.2e-59
Seed eggNOG ortholog2880.D7FQR2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2A3HT@1,2RY5B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.0897849-CDS-M-pyrifera_M_contig88669:119..5661622816797.0897849-CDS-M-pyrifera_M_contig88669:119..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88669 120..566 -
1692278184.1819286-CDS-M-pyrifera_M_contig88669:119..5661692278184.1819286-CDS-M-pyrifera_M_contig88669:119..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88669 120..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88669.20590.1prot_M-pyrifera_M_contig88669.20590.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88669 120..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88669.20590.1

>prot_M-pyrifera_M_contig88669.20590.1 ID=prot_M-pyrifera_M_contig88669.20590.1|Name=mRNA_M-pyrifera_M_contig88669.20590.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
YLSLAGGKEALARRRRLEIIATKMLQRAFRRHLHTQWRLAEITRQRTIYL
LRYRSAQVIQAMLRGRLGRRVFETEKWLVVVKKSSRLLIQHALNHYPHRK
RVFWYKNGAEEEQLYADYRLLIQRTGFRPPRTVVEQNIREIGGYSLPT*
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mRNA from alignment at M-pyrifera_M_contig88669:120..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88669.20590.1 ID=mRNA_M-pyrifera_M_contig88669.20590.1|Name=mRNA_M-pyrifera_M_contig88669.20590.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig88669:120..566- (Macrocystis pyrifera P11B4 male)
TATTTGTCTCTGGCAGGTGGAAAGGAGGCTTTGGCGCGCAGGCGGCGGTT AGAAATAATCGCCACTAAGATGCTACAGCGCGCCTTTCGACGACACTTGC ACACTCAGTGGAGGCTAGCCGAGATTACAAGGCAGCGCACCATATACTTA CTGCGATATCGTTCGGCGCAAGTGATTCAGGCGATGCTGAGAGGGCGATT GGGTCGCCGCGTGTTCGAAACGGAGAAATGGCTAGTGGTGGTAAAAAAAA GTAGCCGTCTGCTGATTCAACACGCCTTGAACCATTACCCTCATCGCAAG AGGGTATTCTGGTACAAGAATGGAGCCGAGGAGGAACAGCTGTATGCTGA CTACCGTTTACTGATCCAGAGGACAGGCTTCCGCCCCCCAAGGACAGTAG TGGAGCAGAACATTCGAGAAATCGGTGGGTACTCACTACCCACTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88669:120..566-

>mRNA_M-pyrifera_M_contig88669.20590.1 ID=mRNA_M-pyrifera_M_contig88669.20590.1|Name=mRNA_M-pyrifera_M_contig88669.20590.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig88669:120..566- (Macrocystis pyrifera P11B4 male)
TATTTGTCTCTGGCAGGTGGAAAGGAGGCTTTGGCGCGCAGGCGGCGGTT
AGAAATAATCGCCACTAAGATGCTACAGCGCGCCTTTCGACGACACTTGC
ACACTCAGTGGAGGCTAGCCGAGATTACAAGGCAGCGCACCATATACTTA
CTGCGATATCGTTCGGCGCAAGTGATTCAGGCGATGCTGAGAGGGCGATT
GGGTCGCCGCGTGTTCGAAACGGAGAAATGGCTAGTGGTGGTAAAAAAAA
GTAGCCGTCTGCTGATTCAACACGCCTTGAACCATTACCCTCATCGCAAG
AGGGTATTCTGGTACAAGAATGGAGCCGAGGAGGAACAGCTGTATGCTGA
CTACCGTTTACTGATCCAGAGGACAGGCTTCCGCCCCCCAAGGACAGTAG
TGGAGCAGAACATTCGAGAAATCGGTGGGTACTCACTACCCACTTGATAT
TTGTCTCTGGCAGGTGGAAAGGAGGCTTTGGCGCGCAGGCGGCGGTTAGA
AATAATCGCCACTAAGATGCTACAGCGCGCCTTTCGACGACACTTGCACA
CTCAGTGGAGGCTAGCCGAGATTACAAGGCAGCGCACCATATACTTACTG
CGATATCGTTCGGCGCAAGTGATTCAGGCGATGCTGAGAGGGCGATTGGG
TCGCCGCGTGTTCGAAACGGAGAAATGGCTAGTGGTGGTAAAAAAAAGTA
GCCGTCTGCTGATTCAACACGCCTTGAACCATTACCCTCATCGCAAGAGG
GTATTCTGGTACAAGAATGGAGCCGAGGAGGAACAGCTGTATGCTGACTA
CCGTTTACTGATCCAGAGGACAGGCTTCCGCCCCCCAAGGACAGTAGTGG
AGCAGAACATTCGAGAAATCGGTGGGTACTCACTACCCACTTGA
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