mRNA_M-pyrifera_M_contig8865.20587.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8865.20587.1
Unique NamemRNA_M-pyrifera_M_contig8865.20587.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: D7FW56_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW56_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.330e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL
Sbjct:  245 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 286
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: A0A835ZEG9_9STRA (Anticodon-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.430e-15
Identity = 33/42 (78.57%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            EVGPRFEMQLYQ++LGT+DQ+EA+NEWV+RPYMNS+K+RR+L
Sbjct:  248 EVGPRFEMQLYQIKLGTVDQLEADNEWVLRPYMNSAKRRRYL 289
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: S8DM27_9LAMI (Brix domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DM27_9LAMI)

HSP 1 Score: 77.0 bits (188), Expect = 7.790e-15
Identity = 32/42 (76.19%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E+GPRFE++LYQ++LGTLDQ EA+NEWV+RPYMN+SKKR+FL
Sbjct:  250 EIGPRFELRLYQIKLGTLDQEEAQNEWVLRPYMNTSKKRKFL 291
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: M4BXS6_HYAAE (Brix domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXS6_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.330e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E GPRFE+QLYQ++LGTLDQ EAENEWV+RPYMNS+KKRR L
Sbjct:  240 ECGPRFELQLYQVKLGTLDQKEAENEWVLRPYMNSAKKRRVL 281
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: A0A662XZ47_9STRA (Brix domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZ47_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.450e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E GPRFE+QLYQ++LGTLDQ EAENEWV+RPYMNS+KKRR L
Sbjct:  284 ECGPRFELQLYQVKLGTLDQKEAENEWVLRPYMNSAKKRRIL 325
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: B9GWL5_POPTR (Brix domain-containing protein n=15 Tax=Malpighiales TaxID=3646 RepID=B9GWL5_POPTR)

HSP 1 Score: 75.9 bits (185), Expect = 2.100e-14
Identity = 30/42 (71.43%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E+GPRFEM+LYQ++LGT+DQ EA+NEWV+RPYMN++KKR+F+
Sbjct:  250 EIGPRFEMRLYQIKLGTVDQTEAQNEWVLRPYMNTTKKRKFI 291
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BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: K3WK67_GLOUD (Brix domain-containing protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WK67_GLOUD)

HSP 1 Score: 75.5 bits (184), Expect = 2.920e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E GPRFE+QLYQL+LGT DQ EAENEWV+RPYMNS+KKRR L
Sbjct:  252 ECGPRFELQLYQLKLGTCDQKEAENEWVLRPYMNSAKKRRVL 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: A0A8J5M518_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5M518_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.550e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E GPRFE+QLYQ++LGTLDQ EAENEWV+RPYMNS+KKRR L
Sbjct:  712 ECGPRFELQLYQVKLGTLDQKEAENEWVLRPYMNSAKKRRVL 753
[Close]
BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: A0A484E871_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E871_BRELC)

HSP 1 Score: 76.3 bits (186), Expect = 3.580e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E GPRFE+QLYQ++LGTLDQ EAENEWV+RPYMNS+KKRR L
Sbjct:  803 ECGPRFELQLYQVKLGTLDQKEAENEWVLRPYMNSAKKRRVL 844
[Close]
BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Match: A0A0P1AMH6_PLAHL (U3 small nucleolar ribonucleoprotein protein imp4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMH6_PLAHL)

HSP 1 Score: 74.7 bits (182), Expect = 5.310e-14
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 EVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 127
            E GPRFE+QLYQ++LGTL+Q EAENEWV+RPYMNS+KKRR L
Sbjct:  246 ECGPRFELQLYQVKLGTLEQKEAENEWVLRPYMNSAKKRRVL 287
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8865.20587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW56_ECTSI2.330e-19100.00Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZEG9_9STRA1.430e-1578.57Anticodon-binding protein n=1 Tax=Tribonema minus ... [more]
S8DM27_9LAMI7.790e-1576.19Brix domain-containing protein n=1 Tax=Genlisea au... [more]
M4BXS6_HYAAE1.330e-1480.95Brix domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A662XZ47_9STRA1.450e-1480.95Brix domain-containing protein n=2 Tax=Nothophytop... [more]
B9GWL5_POPTR2.100e-1471.43Brix domain-containing protein n=15 Tax=Malpighial... [more]
K3WK67_GLOUD2.920e-1480.95Brix domain-containing protein n=21 Tax=Oomycota T... [more]
A0A8J5M518_9STRA3.550e-1480.95Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A484E871_BRELC3.580e-1480.95Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AMH6_PLAHL5.310e-1478.57U3 small nucleolar ribonucleoprotein protein imp4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8865contigM-pyrifera_M_contig8865:8794..10259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue4.4e-12
Seed eggNOG ortholog2880.D7FW56
Preferred nameIMP4
KEGG koko:K14561
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019843,GO:0022613,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042134,GO:0042162,GO:0042254,GO:0042274,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098847,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.rRNA primary transcript binding
EggNOG OGsCOG2136@1,KOG2781@2759
COG Functional cat.AJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size280
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8865.20587.1prot_M-pyrifera_M_contig8865.20587.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8865 8816..10109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.936871-UTR-M-pyrifera_M_contig8865:8793..88151622816796.936871-UTR-M-pyrifera_M_contig8865:8793..8815Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8865 8794..8815 +
1692278184.090285-UTR-M-pyrifera_M_contig8865:8793..88151692278184.090285-UTR-M-pyrifera_M_contig8865:8793..8815Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8865 8794..8815 +
1622816796.970218-UTR-M-pyrifera_M_contig8865:10109..102591622816796.970218-UTR-M-pyrifera_M_contig8865:10109..10259Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8865 10110..10259 +
1692278184.1265562-UTR-M-pyrifera_M_contig8865:10109..102591692278184.1265562-UTR-M-pyrifera_M_contig8865:10109..10259Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8865 10110..10259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.9475975-CDS-M-pyrifera_M_contig8865:8815..88541622816796.9475975-CDS-M-pyrifera_M_contig8865:8815..8854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8865 8816..8854 +
1692278184.1032846-CDS-M-pyrifera_M_contig8865:8815..88541692278184.1032846-CDS-M-pyrifera_M_contig8865:8815..8854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8865 8816..8854 +
1622816796.9598432-CDS-M-pyrifera_M_contig8865:10040..101091622816796.9598432-CDS-M-pyrifera_M_contig8865:10040..10109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8865 10041..10109 +
1692278184.1139793-CDS-M-pyrifera_M_contig8865:10040..101091692278184.1139793-CDS-M-pyrifera_M_contig8865:10040..10109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8865 10041..10109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8865.20587.1

>prot_M-pyrifera_M_contig8865.20587.1 ID=prot_M-pyrifera_M_contig8865.20587.1|Name=mRNA_M-pyrifera_M_contig8865.20587.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
MQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL*
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mRNA from alignment at M-pyrifera_M_contig8865:8794..10259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8865.20587.1 ID=mRNA_M-pyrifera_M_contig8865.20587.1|Name=mRNA_M-pyrifera_M_contig8865.20587.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1466bp|location=Sequence derived from alignment at M-pyrifera_M_contig8865:8794..10259+ (Macrocystis pyrifera P11B4 male)
CGAAGTCGGACCGCGCTTTGAAATGCAACTCTACCAACTCCGGCTTGGGA
CACTTGACCAGGTCAGAAGTTGTGGTAGCTCTGCGACTGAGAGTGTCCAG
CTGTGCTTTCTCCGTGCATGAATCTTGCCCGAAAGAAAATTATTTGGGCA
CGTGAGCTCAGTGTAATTTCCAATCTGGCACGTTGGGACGTTGCGTATTT
GATAAAAAGTCGGAGTCTAAAGTATATTTTGACATGTGCGCACAACAGTG
TCAAGTCAAGCTCGAATGAGCTTGCAAAAACCACGTTTAACGGTAGTGCT
TTCTCCCCTTCAGTACGAAGTCAACGCAATGCTACCGAGGAAGACCATGT
TGGTAGGCTGTATTAAAAAATGGTGTTTGTTTTTCTATGCGTGCGCAGTG
ATCGTTGCCTCAACCCAGACTGTACTCGCCTTCGTCAAGAGAGCACTTAT
ATCACACTTGCGTCTATTAATGTGGCAATGGAAGCAGACAATACTCTATA
CAGGATAATCGCAGTTTAGACTTATCGAGCATCTATTCTTTTTGGGAGGA
TAGTCTGATGTGCTACCGAGCGGCTTTGGCAGTACTGTACTGTGATATTT
ACGTGCGATTTATTTTCGTTCTTGTACAGCGATGTAATCTACTTTTGTTC
TTGTACAAAGCGCCAGGGGGGGTATCCTTTGCAAAGACGGCGTATCTGAG
ACGAAAATCGAGGTTGCTCCGAGAAGGGCAGCCTTGAGTTAATCACCTGG
GGCCTGGATTACCACCATGCTCGATTGGATGCGAACATTGCTCTCACGCT
GACCCGTAGCCACGCACAACTCCAGACTCGACCAAAACAAAAGCCCCCAG
CCCAAGCCATCTAATCTAGTCTTTGTGGGGGCGTGTCCTTTTGAGCACGA
GTTTTTCTTCCTGGCGGGGCTCCTGAACTTAGAGACCAGCAATGTCTTCA
ACTTCCCGTTTGTCGTCGACATTGTTGATGCTATTCCTTGCATGCCTACG
AGTAGCACGTGGGATTGTTCGTCGGGTTGCGCGTGCATTTGTTTTTGCCA
GAATCGATTTTTGCGTCAAGTATGTGTACCTGCTCATGTGAAAAACGTCA
TACCGGTAATAACTTAGGTAGCCGCTCTACCGTGGCATGACTCAACCATA
CATCAAACTCTCACATACCCCGCATTGCCGTGCACTGCTGTTTTCCTTGG
AATAGGGGTCCTGATTCTTGACACTTTCTTTCGAATCTTTGCCGCAGGTC
GAAGCCGAAAACGAGTGGGTGATGCGGCCGTACATGAACTCAAGCAAGAA
GAGGCGGTTTTTGTAGTTGGTGGGTGCGCTTTGTCGATCTCTGGAGGAAG
TTATGCTATTTCTTATCGCAGGTCGACGCCCTAAAAGGAGTGGATGATGC
GGCTAACAGCCTTGTATTAAGCCAAGCAAGATGCGGCTTTTTGAACTTGG
TGCATGCACTCCGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8865:8794..10259+

>mRNA_M-pyrifera_M_contig8865.20587.1 ID=mRNA_M-pyrifera_M_contig8865.20587.1|Name=mRNA_M-pyrifera_M_contig8865.20587.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig8865:8794..10259+ (Macrocystis pyrifera P11B4 male)
ATGCAACTCTACCAACTCCGGCTTGGGACACTTGACCAGATGCAACTCTA
CCAACTCCGGCTTGGGACACTTGACCAGGTCGAAGCCGAAAACGAGTGGG
TGATGCGGCCGTACATGAACTCAAGCAAGAAGAGGCGGTTTTTGTAGGTC
GAAGCCGAAAACGAGTGGGTGATGCGGCCGTACATGAACTCAAGCAAGAA
GAGGCGGTTTTTGTAG
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