mRNA_M-pyrifera_M_contig88646.20585.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88646.20585.1
Unique NamemRNA_M-pyrifera_M_contig88646.20585.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A6J4IAA4_9ACTN (Uncharacterized protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4IAA4_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 6.670e-20
Identity = 86/254 (33.86%), Postives = 114/254 (44.88%), Query Frame = 1
Query:   58 SSGKAGEHAYFPGFVAL---------LLAAAGVWIGWRLLR-----RGSDVVRTGVRTDEL-LALVTAGAVAAVFALGPSPGGVKGPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILEVGGPMARVDVPEGDRLL-VYEALADLDPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            S G  G      GFV L         L+AAAG  +G R  R      G    R   R     + L  A  V A+ A+GP  G +  P+R L   VPG +  RV SRF ++  +  ALL G   + L    PR     +  ++ GL++ E+       +V  GD +L V EAL DLDPG V ELPV        + +V A R   +  D   R+ GYSG  P G AE       +P+P A       GV +V+LH
Sbjct:  290 SGGDDGSGEGTDGFVGLTVVALAGIALVAAAGGVVGSRRGRSASGGEGRQQHRPADRRRRYAVPLGLACVVGALLAVGPDQGLLSVPYRQLRPLVPGLESARVLSRFWILPALGLALLAGRGLERLPALRPRPA---LGGLVVGLLVAELFVRPGSAEVDIGDEVLAVNEALDDLDPGAVTELPVPALP---HYPYVLAVRQLRSLEDGLPRVEGYSGDAPPGLAEYLQATSTFPSPEAFTALRQAGVRHVVLH 537          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A1F5AV48_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium RBG_16_63_16 TaxID=1797273 RepID=A0A1F5AV48_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 7.280e-20
Identity = 85/268 (31.72%), Postives = 125/268 (46.64%), Query Frame = 1
Query:    4 LTPQRDNWFWGSVLDPINSSGKAGEHAYFPGFVALLLAAAGVWIGWRLLRRGSDVVRTGVRTDEL------LALVTAGAV---AAVFALGPSPGGVKGPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILEVGG-PMARVDVPEGDRLL-VYEALA-DLDPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            L     N  +G++ +   +S    E   FPG +A +LA AG+ +   L R  S   ++      L      LA    GA+   A +F  GP     KGP+ LL ++VPGF+G+RV +RF +      A+L     + LI R           ++  LV+ E    P+   + P G  +  VY  LA   D G VLELP+  P  G+    VE PR+Y +T+ W++ +NGYSG  P  + E     +  P       A  LGV Y+I+H
Sbjct:  271 LAASPTNRLYGALTERFQTS----EKHLFPGALAFILAVAGL-MSLTLRRHPSGRGQSPPGGQSLPLPSPKLAAAVYGAITLLAFLFTFGP-----KGPYVLLFKYVPGFNGLRVPARFQIFVMFGIAVLAAFGTKALIARLAGNFRRLAFGLLPLLVLAEYAAFPVPLEEFPPGGEVPEVYRWLAAQKDDGAVLELPLPPPRFGL--GLVECPRVYFSTVHWHNLVNGYSGFFPPVYDELLRRWRELPVAQNVRDASDLGVRYLIIH 526          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A399XXG9_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A399XXG9_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.940e-18
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  217 GAVAAVFALGP--SPGGVKGPFRLLHRF---VPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILEVGGPMARVDVPEGDRLLVYEA-LADLDPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            GA   +F+ GP  +  G+  P  L +RF   VPGF G+RV SRFAV+ ++  A+L  +   +L  R    +A  VA  +  L    V  P+    V   +++  Y A L +  PG V+E+P+    +GV  A  +  R Y +T DW  R+NGYSG  P G+ E    ++G+P  ++ +  E   V YV++H
Sbjct:  387 GATGLIFSFGPYVAVPGIGRPIPLPYRFLMFVPGFKGLRVPSRFAVLFYLGLAVLGAMGVAWLWRRGRAGKAGVVALSLLLLAEFGVSLPVTTGLVGTAEQMPSYVAWLREAPPGPVIEMPIYR--EGVTGAVRQGYRQYVSTFDWKPRVNGYSGYFPVGYKEFVEVMRGFPDEASISALEEREVRYVLVH 575          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A2V8DBG0_9BACT (PA14 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8DBG0_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-13
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query:  106 LLLAAAGVW--IGWRLLRRGSDVVRTG-VRTDELLALVTAGAVAAVFALGPSPGGVKGPFRLLHRFV---PGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILE-----VGGPMARVDVPEGDRLLVYEALADLDPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            +L+  AG+W  + W + R  + +      R +     +   AV    ALGP  G        L RFV   PGF+ IRV+SRF ++  +  A+L G+    +  R  R R    A ++  L++ E     +G      +VP  DR L  +      P VV E PV+  ++   +   E   M H+T  W   ++GYSG       +  + +Q +P  ++      LGVTY+++H
Sbjct:  185 ILVVVAGIWCVLAWPISRHETWIESLAPYRRNPTAFYLLLTAVCVGLALGPPYG--------LWRFVYWLPGFNLIRVSSRFMIVGLLGIAVLAGMGFDKISSRLARQRRVVFATVVGVLLVAEYGAIPIGVQPGNAEVPAIDRWLDSQP----KPFVVAEAPVQRLENSSAFERQETAYMIHSTAHWQKTVHGYSGWRTALHGQLYSKMQAFPDETSVASLSDLGVTYIVVH 405          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A7C6DQP6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6DQP6_9CHLR)

HSP 1 Score: 77.8 bits (190), Expect = 1.320e-12
Identity = 74/240 (30.83%), Postives = 106/240 (44.17%), Query Frame = 1
Query:   88 FPGFVALLLAAAGVWIGWRLLRRGSDVVRTGVRTDELLALVTAGAVAAVFALGPSPGGVKG----------PFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILEVGGPMARVDVPEGDRLL-VYEALADLD-PGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            FPG +AL+LAA G       L RG        R D L+    AGA  A+ ALGP     +           P++ L+  +PGF  +RV SRFAV+  +  A L G         A   R   V  ++  + +  +  P+    VP G  +  +Y  LA    P  V+ELP+  P+      FV+AP  Y +T   +  +NG     P    E AA L+ +P+  +      LGV Y +LH
Sbjct:  287 FPGAIALVLAALG-------LARG--------RADRLVWACVAGA-GALLALGPGLHLTRDGPAVALPITLPYQWLYDLLPGFQSLRVPSRFAVLMMLGTASLAGXXXXXXXXGATSRRRLAVGAVVGAIWVESIAVPLPASTVPAGASIPEIYRWLAAQPAPRSVVELPLE-PNP-----FVDAPWAYLSTYHRSRLVNGARSFVPVEHLEIAARLRSFPSEPSVATLRALGVDYAVLH 504          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A7Y4WVW2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4WVW2_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 7.250e-12
Identity = 69/204 (33.82%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  223 VAAVFALGPSPGGV------KGPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAA----------WVAP-IIAGLVILEVGGPMARV-DVPEGDRLLVYEALADLDP-GVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPT-PSAENRA-ETLGVTYVILH 771
            +AA   LGP P  +        P+R+ + +VPGFDG+RV +RFA++     A+L G  A  +  RAPR   A          WV+P ++ G    +     +R+ D+    R  VY  +A L P  V+ ELP+  P + V++       MY A    +  INGYSG  P+G+ E A  L      P A  RA E  G T+ I+H
Sbjct:  429 LAAWLTLGPVPESLGQPVTLASPYRVAYDYVPGFDGLRVPARFAMVLTFMLAVLAGSGAARVGRRAPRTVGALLTAALLLEGWVSPFVLNGAPAEDPDSVTSRLGDLDRPGR--VYATVAALGPDAVIAELPLGGPFEDVRF-------MYQALGHRHRLINGYSGFFPEGYRELATALSAAAQDPGAALRALEMQGATHAIVH 623          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A7C3TUJ2_9DELT (F5/8 type C domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3TUJ2_9DELT)

HSP 1 Score: 75.5 bits (184), Expect = 7.720e-12
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  268 GPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILE-VGGPMARVDVPEG-DRLLVYEALADL-DPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            GP+ LL R VPGFDG+RV+SRF +   ++ AL   L  + L        A  +  ++  L+++E +  P+    VP G D   VY  L    D G V+ELP+  P   ++ A +EAPR+Y +        NGYSG  P  + E    +    T       + LG+ Y+++H
Sbjct:  432 GPYELLRRLVPGFDGLRVSSRFFIFVLLSLALFAALGFKALHRGMGNPSAKALLVVLPLLMLIEYLAVPLPIFPVPTGKDIPPVYSWLKKQPDDGAVVELPL--PKPWIEMARIEAPRVYFSIYHGKRLFNGYSGYFPPVYLEMLERMAEGFTEERIKDFQALGLKYLVVH 600          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A1F2SZC5_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 TaxID=1797183 RepID=A0A1F2SZC5_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 3.270e-11
Identity = 75/225 (33.33%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  184 RTDELLALVTAGAVAAVFALGPSPGG------VKGPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAA-WVAPIIAGLVILE-------VGG--PMARVDVPEGDRLL-------VYEALADLDPG--VVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWP----TPSAENRAETLGVTYVILH 771
            R      ++ AGAV    +LGP+P        +  P+RLL   VPGFDG+RV +R A+++  A A+L G  A  L     R RA   V   +AG+ +LE       V G  P+   + PE  RL        VY  + D +P   V++ELP+  PD  ++        MY++T+ W   +NGYSG TP  +      L   P       A  RA   G TY I+H
Sbjct:  423 RDRGFFVVMLAGAVW--LSLGPAPQSLGRPVEIAAPYRLLFEAVPGFDGLRVPARLAMVAAFALAVLGGYGAAAL----SRTRAGRMVVAALAGVFLLEATHVPFLVNGVTPLRSFNTPEA-RLYRPARAPAVYARVRD-EPADSVLVELPLGPPDFDLR-------AMYYSTVHWRPVVNGYSGFTPPHYPRLVTALSEIPRHPEVALAALRAS--GATYAIVH 630          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A7C6EN02_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A7C6EN02_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 4.770e-11
Identity = 54/175 (30.86%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  262 VKGPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAA--WV-APIIAGLVILEVGGPMARVDVP-EGDRLLVYEALADL-DPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLGVTYVILH 771
            + GP+ LL R++PGF  IRV SRF+V+  ++ A+L GLA   L+ R+ +      W+ A ++A ++I EV  P+  + VP +G    +Y  ++ L +   +LELP+  P   + ++  EA  MY++       +NGYSG  P  ++     L+ +P+    +    L V ++++H
Sbjct:  476 LTGPYNLLLRWIPGFQAIRVPSRFSVMVSLSLAILCGLAIT-LLSRSSKLFPGQKWLLAVLLAAILIEEVSFPLPLIPVPHKGQPPPIYSQVSQLPENAALLELPL--PASRLTYS-QEALPMYYSLFHRLKIVNGYSGFIPPAYSMIQEALETFPSEETVSLLHRLNVRFILIH 646          
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Match: A0A7W0KA46_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W0KA46_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 7.930e-11
Identity = 71/225 (31.56%), Postives = 106/225 (47.11%), Query Frame = 1
Query:  172 RTGVRTDELLALVTAGAVAAVF-ALGPSPGGVK------GPFRLLHRFVPGFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLVILEV-------------GG--PMARVDVPEGDRLLVYEALADL-DPGVVLELPVRTPDDGVQWAFVEAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWP-TPSAENRA-ETLGVTYVILH 771
            RTG      L L     + A++ +LGP P          G +R+L+  VPGF+G+RV +R+A+++ V  ++  G  A      A R  + W+A  I   V++E              GG  P ARV+ P  D  +VY+ LA + +  V+ E P   P     W   E   +Y+AT+ W   +NGYSG  PQ +    A LQ     P A  +A    G T++I+H
Sbjct:  398 RTGAACRSPLTLAVLLTILAMWLSLGPVPQSHGRTLQGLGLYRVLYDHVPGFEGLRVPARYAMVAAVFLSIAAGYGAA-----AARRTSVWIA--ICAAVLIETAFAPMPLNQTWGDGGVQPPARVE-PASDAPVVYQHLAGMPNATVITEFPFGDP----AW---EIRYVYYATVHWKRLVNGYSGGFPQPYKVRVALLQRVAENPEAAWQALRDTGTTHMIVH 607          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88646.20585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J4IAA4_9ACTN6.670e-2033.86Uncharacterized protein n=1 Tax=uncultured Acidimi... [more]
A0A1F5AV48_9BACT7.280e-2031.72F5/8 type C domain-containing protein n=1 Tax=Cand... [more]
A0A399XXG9_9BACT1.940e-1834.03Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2V8DBG0_9BACT1.140e-1327.90PA14 domain-containing protein n=1 Tax=Acidobacter... [more]
A0A7C6DQP6_9CHLR1.320e-1230.83Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7Y4WVW2_9BACT7.250e-1233.82Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7C3TUJ2_9DELT7.720e-1232.75F5/8 type C domain-containing protein n=1 Tax=Delt... [more]
A0A1F2SZC5_9BACT3.270e-1133.33Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7C6EN02_9BACT4.770e-1130.86F5/8 type C domain-containing protein n=1 Tax=Cand... [more]
A0A7W0KA46_9BACT7.930e-1131.56Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88646contigM-pyrifera_M_contig88646:43..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.4
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog326427.Cagg_1001
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Probably functions as a manganese efflux pump
EggNOG OGs2G8IE@200795,376IX@32061,COG1971@1,COG1971@2
COG Functional cat.P
Best tax levelChloroflexia
Best eggNOG OGNA|NA|NA
Exons1
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.8734894-CDS-M-pyrifera_M_contig88646:42..8131622816796.8734894-CDS-M-pyrifera_M_contig88646:42..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88646 43..813 -
1692278184.054566-CDS-M-pyrifera_M_contig88646:42..8131692278184.054566-CDS-M-pyrifera_M_contig88646:42..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88646 43..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88646.20585.1prot_M-pyrifera_M_contig88646.20585.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88646 43..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88646.20585.1

>prot_M-pyrifera_M_contig88646.20585.1 ID=prot_M-pyrifera_M_contig88646.20585.1|Name=mRNA_M-pyrifera_M_contig88646.20585.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
LLTPQRDNWFWGSVLDPINSSGKAGEHAYFPGFVALLLAAAGVWIGWRLL
RRGSDVVRTGVRTDELLALVTAGAVAAVFALGPSPGGVKGPFRLLHRFVP
GFDGIRVTSRFAVISFVAGALLVGLAAQYLIDRAPRARAAWVAPIIAGLV
ILEVGGPMARVDVPEGDRLLVYEALADLDPGVVLELPVRTPDDGVQWAFV
EAPRMYHATIDWNDRINGYSGSTPQGFAETAATLQGWPTPSAENRAETLG
VTYVILH
back to top

mRNA from alignment at M-pyrifera_M_contig88646:43..813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88646.20585.1 ID=mRNA_M-pyrifera_M_contig88646.20585.1|Name=mRNA_M-pyrifera_M_contig88646.20585.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig88646:43..813- (Macrocystis pyrifera P11B4 male)
CTCCTCACCCCCCAGCGCGACAACTGGTTCTGGGGTTCGGTGCTCGACCC GATCAACAGCTCGGGCAAGGCCGGGGAGCACGCCTACTTCCCCGGCTTCG TCGCACTACTGCTGGCCGCCGCCGGGGTGTGGATCGGCTGGCGGCTGCTG CGTCGGGGGAGCGATGTCGTGCGCACCGGAGTGCGCACCGACGAACTCCT CGCACTGGTGACCGCCGGCGCGGTTGCCGCCGTCTTCGCGCTCGGGCCGT CGCCCGGCGGCGTCAAGGGCCCGTTCCGGCTGCTGCATCGCTTCGTGCCG GGGTTCGACGGCATCAGGGTCACCTCCCGGTTTGCGGTGATCTCCTTCGT TGCCGGCGCGCTCCTGGTCGGCCTGGCGGCCCAGTACCTCATCGATCGCG CGCCTCGTGCGCGCGCCGCGTGGGTCGCGCCGATCATCGCCGGCCTCGTG ATCCTGGAGGTCGGCGGGCCGATGGCGCGGGTCGACGTGCCCGAGGGGGA CCGGCTCCTGGTCTACGAAGCGCTGGCCGACCTCGACCCCGGCGTGGTGC TGGAACTACCCGTCCGCACGCCCGACGACGGTGTCCAGTGGGCCTTCGTC GAGGCACCCCGGATGTATCACGCGACCATCGACTGGAATGACCGGATCAA CGGCTACTCGGGGAGCACGCCACAGGGTTTCGCCGAGACAGCCGCCACGC TCCAGGGGTGGCCGACCCCATCGGCGGAGAACCGAGCCGAAACACTCGGC GTCACGTATGTGATCCTCCAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88646:43..813-

>mRNA_M-pyrifera_M_contig88646.20585.1 ID=mRNA_M-pyrifera_M_contig88646.20585.1|Name=mRNA_M-pyrifera_M_contig88646.20585.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig88646:43..813- (Macrocystis pyrifera P11B4 male)
CTCCTCACCCCCCAGCGCGACAACTGGTTCTGGGGTTCGGTGCTCGACCC
GATCAACAGCTCGGGCAAGGCCGGGGAGCACGCCTACTTCCCCGGCTTCG
TCGCACTACTGCTGGCCGCCGCCGGGGTGTGGATCGGCTGGCGGCTGCTG
CGTCGGGGGAGCGATGTCGTGCGCACCGGAGTGCGCACCGACGAACTCCT
CGCACTGGTGACCGCCGGCGCGGTTGCCGCCGTCTTCGCGCTCGGGCCGT
CGCCCGGCGGCGTCAAGGGCCCGTTCCGGCTGCTGCATCGCTTCGTGCCG
GGGTTCGACGGCATCAGGGTCACCTCCCGGTTTGCGGTGATCTCCTTCGT
TGCCGGCGCGCTCCTGGTCGGCCTGGCGGCCCAGTACCTCATCGATCGCG
CGCCTCGTGCGCGCGCCGCGTGGGTCGCGCCGATCATCGCCGGCCTCGTG
ATCCTGGAGGTCGGCGGGCCGATGGCGCGGGTCGACGTGCCCGAGGGGGA
CCGGCTCCTGGTCTACGAAGCGCTGGCCGACCTCGACCCCGGCGTGGTGC
TGGAACTACCCGTCCGCACGCCCGACGACGGTGTCCAGTGGGCCTTCGTC
GAGGCACCCCGGATGTATCACGCGACCATCGACTGGAATGACCGGATCAA
CGGCTACTCGGGGAGCACGCCACAGGGTTTCGCCGAGACAGCCGCCACGC
TCCAGGGGTGGCCGACCCCATCGGCGGAGAACCGAGCCGAAACACTCGGC
GTCACGTATGTGATCCTCCACCTCCTCACCCCCCAGCGCGACAACTGGTT
CTGGGGTTCGGTGCTCGACCCGATCAACAGCTCGGGCAAGGCCGGGGAGC
ACGCCTACTTCCCCGGCTTCGTCGCACTACTGCTGGCCGCCGCCGGGGTG
TGGATCGGCTGGCGGCTGCTGCGTCGGGGGAGCGATGTCGTGCGCACCGG
AGTGCGCACCGACGAACTCCTCGCACTGGTGACCGCCGGCGCGGTTGCCG
CCGTCTTCGCGCTCGGGCCGTCGCCCGGCGGCGTCAAGGGCCCGTTCCGG
CTGCTGCATCGCTTCGTGCCGGGGTTCGACGGCATCAGGGTCACCTCCCG
GTTTGCGGTGATCTCCTTCGTTGCCGGCGCGCTCCTGGTCGGCCTGGCGG
CCCAGTACCTCATCGATCGCGCGCCTCGTGCGCGCGCCGCGTGGGTCGCG
CCGATCATCGCCGGCCTCGTGATCCTGGAGGTCGGCGGGCCGATGGCGCG
GGTCGACGTGCCCGAGGGGGACCGGCTCCTGGTCTACGAAGCGCTGGCCG
ACCTCGACCCCGGCGTGGTGCTGGAACTACCCGTCCGCACGCCCGACGAC
GGTGTCCAGTGGGCCTTCGTCGAGGCACCCCGGATGTATCACGCGACCAT
CGACTGGAATGACCGGATCAACGGCTACTCGGGGAGCACGCCACAGGGTT
TCGCCGAGACAGCCGCCACGCTCCAGGGGTGGCCGACCCCATCGGCGGAG
AACCGAGCCGAAACACTCGGCGTCACGTATGTGATCCTCCAC
back to top