mRNA_M-pyrifera_M_contig88637.20580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88637.20580.1
Unique NamemRNA_M-pyrifera_M_contig88637.20580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A7S1C3B3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3B3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.170e-39
Identity = 84/170 (49.41%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    4 VRLVVWDFDKTLLRIHTFGTHVTVAQARE--RP---LAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVGRGV---FTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAFSFSCPRAFTRAEW 489
            V+LVVWDFD T+L +H+FG  +  +  RE  RP   L  DF DL  F+AL  ALLERGV VA+ASFG Y  IQ Y D A G G    F+RDNI+TP +VGGKDG +L  GKNLQL+ L+       E    + R +VLFFDD   N+  A  +GY  SF  P  F+   W
Sbjct:   24 VQLVVWDFDLTVLSVHSFGMRIKASDIREGLRPPETLRKDFTDLEFFKALTRALLERGVKVAIASFGVYATIQAYCDFAFGEGESNPFSRDNINTPGMVGGKDGCSLPHGKNLQLRMLV-------EDWAGVARDRVLFFDDDGANVDGAIADGYPHSFHAPEGFSEELW 186          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A7R9XTA9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XTA9_MICPS)

HSP 1 Score: 139 bits (349), Expect = 5.210e-38
Identity = 78/167 (46.71%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    7 RLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVGRGVFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTM-GADGEHGEPIRRH-----QVLFFDDSRRNILWAKNEGYAFSFSCPRAFTRAEW 489
            +L+V+DFD T+LRIH++   V       R L AD AD A F+A V     R V VAVASFG +E I+ YLDR  G GVFTR NI TPS+ GGKDG  +RGGK   L+ L + + GADG  G           +VLFFDD  +N+  A+  GY  S      FTR +W
Sbjct:   56 KLIVFDFDLTILRIHSWAERVAAEDVPHRDLDADVADAAFFRAFVERARARDVPVAVASFGAFETIKAYLDRVCGEGVFTRANIDTPSMHGGKDGTVVRGGKVPMLRALTTALVGADGGGGTETEAAVRAAPRVLFFDDDEKNVTGAREHGYVMSVLTDACFTREKW 222          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: C1FDL1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL1_MICCC)

HSP 1 Score: 135 bits (340), Expect = 4.170e-37
Identity = 72/151 (47.68%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    1 RVRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVGRGVFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAFS 453
            R +L+VWDFD T+L IH++   +      +R L  D ADLA F+  V   LE+G AVA+ASFG+YEVIQ Y+DR VGRGVF R+NI+TPS  G KDG  LRGGK   L+ L   M         +R+  ++FFDDS  N+  A   G+  S
Sbjct:   14 RPKLIVWDFDLTVLSIHSWAAGIRQKDVADRTLYDDVADLAFFRHFVQRALEQGFAVAIASFGQYEVIQAYMDRIVGRGVFNRENIATPSKFGSKDGRALRGGKVPMLKSLACKMLRASPQELSLRKSDIIFFDDSWDNVCGAIENGFIHS 164          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A482RBN2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RBN2_9ARCH)

HSP 1 Score: 118 bits (295), Expect = 4.340e-30
Identity = 71/144 (49.31%), Postives = 86/144 (59.72%), Query Frame = 1
Query:    4 VRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVG-------RGVFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRR 414
            VR VVWDFD T+L +H+FG  +       R L +DF DL  F ALV  LL   + VA+ASFG YEVIQTY+D A G         +FTRDNI TP+ VGG DG +LRGGKN QL+ L +  G   E        Q+LFFD + R
Sbjct:   80 VRGVVWDFDLTVLSVHSFGLRLRPQDVPMRNLFSDFRDLPFFIALVHELLHHNIGVAIASFGRYEVIQTYMDLAFGITAGNEAHRIFTRDNIITPASVGGIDGCSLRGGKNSQLELLSAATGWTPE--------QILFFDGTLR 215          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A1Y5IKJ3_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IKJ3_OSTTA)

HSP 1 Score: 103 bits (256), Expect = 1.620e-24
Identity = 69/187 (36.90%), Postives = 89/187 (47.59%), Query Frame = 1
Query:    4 VRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPAL----------------------------LERGVAVAVASFGEYEVIQTYLDRAVGRGVFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAFSFSCPRAFTR 480
            V LV+ DFD TLL IH     V+  +        DF D+  F+A V A                              +RG+ V +ASFG YEVIQ Y+DRA+G+G  TR  ISTPSVVG +DG ++ GGKN Q+Q        + E      R  VL FDD  RN+  A   G+  +   P  FT+
Sbjct:    4 VELVILDFDLTLLNIHACAERVSAREVETGKRDGDFVDVECFRAFVGACESRGDGGRDGRRTRDETDGTDARRAGSAKKRGIDVRIASFGVYEVIQAYVDRALGKGAMTRREISTPSVVGVRDGCSVSGGKNKQMQKFCEEKYGEKEWKRYANR--VLLFDDDERNVAKAIEGGFR-AVRVPAGFTK 187          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A5A8E965_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E965_CAFRO)

HSP 1 Score: 105 bits (261), Expect = 5.480e-24
Identity = 70/166 (42.17%), Postives = 89/166 (53.61%), Query Frame = 1
Query:    4 VRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVGRG---VFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMG-ADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAFSFSCPRAFTRAEW 489
            ++ VV+DFD T+LRIH+F   +       R    DFADL  F+A+   L  R V VA+ASFG  +VI  YL R  G     +F  + I TP+ VG  DG  L  GKN Q+  L+ +MG AD    +P R   +LFFDD R N   A   G   SF CP+ FT   W
Sbjct:  136 LKAVVFDFDLTVLRIHSFSARIEPDMIASRAWEKDFADLKAFEAVCKGLAARDVRVAIASFGRKDVITEYLKRVFGDEMDEIFPPEAICTPADVGSVDGHALPDGKNTQIGVLMKSMGIAD----DPRR---ILFFDDDRANCSKAAAIG-VLSFFCPKHFTEPTW 293          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: K8F6Q9_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F6Q9_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 7.720e-16
Identity = 60/196 (30.61%), Postives = 88/196 (44.90%), Query Frame = 1
Query:    1 RVRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYL---------DRAVGRGVFT--RDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTM----------GADGEHGEPIRRHQVLFFDDSRR------------NILWAKNEGYAFSFSCPRAFTRAEW 489
            R++LVVWDFD T+LRIH+F   ++      R    D AD   F+A +  + ++ + VA+ASFG+ EVI+TYL         D  +    F   + +I TP+ VGG DG +++  K+  L  L               A GE  +P+                         N+  AK  GYA++   P AF R  W
Sbjct:   20 RIKLVVWDFDMTILRIHSFAKRISALDVPRRDYERDCADANFFRAFLREMKQKSIKVAIASFGKREVIETYLKCLVDGKKGDEDLAEYAFNEKKKSIVTPNDVGGTDGCSMKD-KSRMLDALTKRYVLSMNEEDISSAQGE--DPVESSXXXXXXXXXXXXXXXXXXXXEDNVNAAKKLGYAYAVHTPNAFERESW 212          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A7S1FL05_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FL05_NOCSC)

HSP 1 Score: 79.0 bits (193), Expect = 1.620e-14
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    4 VRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVG--RGVFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAFSFSCPRAFTR 480
            +RLVV+DFDKT+++ H +G +             +FA+L+ F+AL+  + ++G   AVASFG ++V+   L  A+G   G+  R    TPS  G +DG +  G KN QL  L +  G        +  +Q++  DD  +N++ A+  G    F+ P   TR
Sbjct:   98 MRLVVFDFDKTIMKEHIWGKYRNAPLENINFSDEEFANLSRFRALIIGIKQQGHVAAVASFGRHDVVDKALRYALGDDHGIAIR----TPSDFGQQDGSSALGDKNTQLAALAARFG--------VSANQIILIDDDEKNVVAAQKAGTQGLFA-PDGLTR 245          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A7S2INH7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2INH7_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-14
Identity = 59/164 (35.98%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    1 RVRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVGRGV---FTRDNISTPSVVGGKDGVTLRG-GKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAFSFSCPRAFTR 480
            R +LVVWDFD TL+R+HTF T VTV +       +D  DL  F+  V  +  +G  VA+AS+G  E+I  YL + V +G+   F    + TPS +G  DG  +   GK   LQ L+   G      +P     VLFF+D   N+    + G+  +   P  FT+
Sbjct:   42 RPKLVVWDFDLTLVRVHTFRTGVTVDKVASC-WRSDMYDLDLFRLFVQVVRAQGGTVAIASYGRREIILEYL-KHVFKGMEQMFLPSMVVTPSAIGLPDGTQIPAPGKCRLLQLLMERSGVS----DPST---VLFFEDDELNVDACHDAGFHMTVYVPDGFTQ 196          
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Match: A0A7S4MCT9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MCT9_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 5.170e-13
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 1
Query:    7 RLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPALLERGVAVAVASFGEYEVIQTYLDRAVGRGVFTRDNISTPSVVGGKDGVTLRGGKNLQLQGLLSTMGADGEHGE-PIRRHQVLFFDDSRRNILWAKNEGY 444
            ++V +DFD+T++++HTF   VT      R L  DFADL  FQ +V  L +  V VAVASFG  +VI+TYL     R V   ++ S          + L     L    +L  +  + E     I R QV+ FDD  +N +     GY
Sbjct:   57 KIVAFDFDQTIVKVHTFFQGVTPNNVHNRSLHEDFADLTLFQEIVQKLQKNNVQVAVASFGYKKVIETYL-----RTVLPHESESI---------IVLSRESCLTKSKMLKKLLTEAESNNLKISRSQVVLFDDDIKNCVSCTKAGY 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88637.20580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S1C3B3_9STRA1.170e-3949.41Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7R9XTA9_MICPS5.210e-3846.71Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1FDL1_MICCC4.170e-3747.68Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A482RBN2_9ARCH4.340e-3049.31Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1Y5IKJ3_OSTTA1.620e-2436.90Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A5A8E965_CAFRO5.480e-2442.17Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
K8F6Q9_9CHLO7.720e-1630.61Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A7S1FL05_NOCSC1.620e-1432.92Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S2INH7_9EUKA2.230e-1435.98Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4MCT9_9EUKA5.170e-1334.69Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88637contigM-pyrifera_M_contig88637:167..655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.687782-CDS-M-pyrifera_M_contig88637:166..6551622816796.687782-CDS-M-pyrifera_M_contig88637:166..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88637 167..655 -
1692278183.9130766-CDS-M-pyrifera_M_contig88637:166..6551692278183.9130766-CDS-M-pyrifera_M_contig88637:166..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88637 167..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88637.20580.1prot_M-pyrifera_M_contig88637.20580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88637 167..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88637.20580.1

>prot_M-pyrifera_M_contig88637.20580.1 ID=prot_M-pyrifera_M_contig88637.20580.1|Name=mRNA_M-pyrifera_M_contig88637.20580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
RVRLVVWDFDKTLLRIHTFGTHVTVAQARERPLAADFADLATFQALVPAL
LERGVAVAVASFGEYEVIQTYLDRAVGRGVFTRDNISTPSVVGGKDGVTL
RGGKNLQLQGLLSTMGADGEHGEPIRRHQVLFFDDSRRNILWAKNEGYAF
SFSCPRAFTRAEW
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mRNA from alignment at M-pyrifera_M_contig88637:167..655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88637.20580.1 ID=mRNA_M-pyrifera_M_contig88637.20580.1|Name=mRNA_M-pyrifera_M_contig88637.20580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig88637:167..655- (Macrocystis pyrifera P11B4 male)
CGGGTGCGGCTGGTGGTGTGGGACTTTGACAAGACGCTGCTGCGGATCCA CACGTTCGGGACGCACGTGACGGTGGCGCAGGCGCGGGAGCGGCCGCTGG CGGCGGATTTCGCCGACCTGGCCACCTTCCAAGCCCTTGTGCCGGCGCTG CTGGAGCGCGGCGTGGCCGTCGCCGTGGCCTCCTTCGGCGAGTACGAGGT CATCCAGACGTACCTGGACCGGGCGGTGGGCAGAGGGGTGTTCACGCGGG ACAACATTAGCACGCCCAGCGTCGTTGGCGGAAAAGACGGCGTTACGCTG CGAGGAGGCAAGAACCTGCAGCTTCAGGGGCTGCTTTCCACGATGGGCGC TGATGGGGAGCACGGGGAGCCGATTCGGAGGCACCAGGTGCTGTTTTTCG ACGATTCGAGGCGAAACATACTTTGGGCCAAAAACGAGGGCTACGCGTTC AGCTTCTCGTGCCCCAGGGCGTTCACGCGGGCAGAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88637:167..655-

>mRNA_M-pyrifera_M_contig88637.20580.1 ID=mRNA_M-pyrifera_M_contig88637.20580.1|Name=mRNA_M-pyrifera_M_contig88637.20580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig88637:167..655- (Macrocystis pyrifera P11B4 male)
CGGGTGCGGCTGGTGGTGTGGGACTTTGACAAGACGCTGCTGCGGATCCA
CACGTTCGGGACGCACGTGACGGTGGCGCAGGCGCGGGAGCGGCCGCTGG
CGGCGGATTTCGCCGACCTGGCCACCTTCCAAGCCCTTGTGCCGGCGCTG
CTGGAGCGCGGCGTGGCCGTCGCCGTGGCCTCCTTCGGCGAGTACGAGGT
CATCCAGACGTACCTGGACCGGGCGGTGGGCAGAGGGGTGTTCACGCGGG
ACAACATTAGCACGCCCAGCGTCGTTGGCGGAAAAGACGGCGTTACGCTG
CGAGGAGGCAAGAACCTGCAGCTTCAGGGGCTGCTTTCCACGATGGGCGC
TGATGGGGAGCACGGGGAGCCGATTCGGAGGCACCAGGTGCTGTTTTTCG
ACGATTCGAGGCGAAACATACTTTGGGCCAAAAACGAGGGCTACGCGTTC
AGCTTCTCGTGCCCCAGGGCGTTCACGCGGGCAGAGTGGCGGGTGCGGCT
GGTGGTGTGGGACTTTGACAAGACGCTGCTGCGGATCCACACGTTCGGGA
CGCACGTGACGGTGGCGCAGGCGCGGGAGCGGCCGCTGGCGGCGGATTTC
GCCGACCTGGCCACCTTCCAAGCCCTTGTGCCGGCGCTGCTGGAGCGCGG
CGTGGCCGTCGCCGTGGCCTCCTTCGGCGAGTACGAGGTCATCCAGACGT
ACCTGGACCGGGCGGTGGGCAGAGGGGTGTTCACGCGGGACAACATTAGC
ACGCCCAGCGTCGTTGGCGGAAAAGACGGCGTTACGCTGCGAGGAGGCAA
GAACCTGCAGCTTCAGGGGCTGCTTTCCACGATGGGCGCTGATGGGGAGC
ACGGGGAGCCGATTCGGAGGCACCAGGTGCTGTTTTTCGACGATTCGAGG
CGAAACATACTTTGGGCCAAAAACGAGGGCTACGCGTTCAGCTTCTCGTG
CCCCAGGGCGTTCACGCGGGCAGAGTGG
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