mRNA_M-pyrifera_M_contig88633.20578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88633.20578.1
Unique NamemRNA_M-pyrifera_M_contig88633.20578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88633.20578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88633contigM-pyrifera_M_contig88633:2..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog4787.PITG_06946T0
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.6195514-CDS-M-pyrifera_M_contig88633:1..4781622816796.6195514-CDS-M-pyrifera_M_contig88633:1..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88633 2..478 +
1692278183.8875906-CDS-M-pyrifera_M_contig88633:1..4781692278183.8875906-CDS-M-pyrifera_M_contig88633:1..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88633 2..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88633.20578.1prot_M-pyrifera_M_contig88633.20578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88633 2..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88633.20578.1

>prot_M-pyrifera_M_contig88633.20578.1 ID=prot_M-pyrifera_M_contig88633.20578.1|Name=mRNA_M-pyrifera_M_contig88633.20578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
INGLAYLYFNGQGGVEMNRTRALELFLLAADGDGSGDAMYNAAVMIRDGL
ADKPPDPVRARELLARASRETANFGAVYDLGCMLLFGKGGQWELEGAVQT
LGHAARVAGPWGKLFRRAFDRYRHRDYVGATLDYLHTASQGLELGAADAA
YLLDRGLST
back to top

mRNA from alignment at M-pyrifera_M_contig88633:2..478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88633.20578.1 ID=mRNA_M-pyrifera_M_contig88633.20578.1|Name=mRNA_M-pyrifera_M_contig88633.20578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig88633:2..478+ (Macrocystis pyrifera P11B4 male)
ATCAATGGCCTTGCCTATCTCTACTTCAATGGCCAAGGAGGTGTGGAAAT
GAACCGAACACGCGCCTTGGAGCTTTTTCTCCTTGCAGCAGATGGTGACG
GGTCAGGTGATGCTATGTACAATGCTGCTGTAATGATTCGTGATGGGCTA
GCAGACAAACCACCCGATCCAGTACGTGCTCGAGAACTCCTCGCTCGTGC
ATCTCGTGAAACCGCCAATTTTGGAGCTGTGTACGATTTGGGTTGTATGT
TATTGTTTGGTAAAGGCGGTCAATGGGAACTAGAGGGTGCTGTTCAAACA
CTAGGACATGCTGCTCGCGTTGCAGGACCATGGGGAAAGTTGTTTCGAAG
GGCATTTGATCGATATCGACATCGTGATTATGTTGGAGCTACCCTCGACT
ATCTTCACACTGCATCACAAGGTCTTGAACTTGGCGCAGCAGATGCTGCC
TATCTCCTTGACCGTGGTCTATCCACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88633:2..478+

>mRNA_M-pyrifera_M_contig88633.20578.1 ID=mRNA_M-pyrifera_M_contig88633.20578.1|Name=mRNA_M-pyrifera_M_contig88633.20578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig88633:2..478+ (Macrocystis pyrifera P11B4 male)
ATCAATGGCCTTGCCTATCTCTACTTCAATGGCCAAGGAGGTGTGGAAAT
GAACCGAACACGCGCCTTGGAGCTTTTTCTCCTTGCAGCAGATGGTGACG
GGTCAGGTGATGCTATGTACAATGCTGCTGTAATGATTCGTGATGGGCTA
GCAGACAAACCACCCGATCCAGTACGTGCTCGAGAACTCCTCGCTCGTGC
ATCTCGTGAAACCGCCAATTTTGGAGCTGTGTACGATTTGGGTTGTATGT
TATTGTTTGGTAAAGGCGGTCAATGGGAACTAGAGGGTGCTGTTCAAACA
CTAGGACATGCTGCTCGCGTTGCAGGACCATGGGGAAAGTTGTTTCGAAG
GGCATTTGATCGATATCGACATCGTGATTATGTTGGAGCTACCCTCGACT
ATCTTCACACTGCATCACAAGGTCTTGAACTTGGCGCAGCAGATGCTGCC
TATCTCCTTGACCGTGGTCTATCCACCATCAATGGCCTTGCCTATCTCTA
CTTCAATGGCCAAGGAGGTGTGGAAATGAACCGAACACGCGCCTTGGAGC
TTTTTCTCCTTGCAGCAGATGGTGACGGGTCAGGTGATGCTATGTACAAT
GCTGCTGTAATGATTCGTGATGGGCTAGCAGACAAACCACCCGATCCAGT
ACGTGCTCGAGAACTCCTCGCTCGTGCATCTCGTGAAACCGCCAATTTTG
GAGCTGTGTACGATTTGGGTTGTATGTTATTGTTTGGTAAAGGCGGTCAA
TGGGAACTAGAGGGTGCTGTTCAAACACTAGGACATGCTGCTCGCGTTGC
AGGACCATGGGGAAAGTTGTTTCGAAGGGCATTTGATCGATATCGACATC
GTGATTATGTTGGAGCTACCCTCGACTATCTTCACACTGCATCACAAGGT
CTTGAACTTGGCGCAGCAGATGCTGCCTATCTCCTTGACCGTGGTCTATC
CACC
back to top