mRNA_M-pyrifera_M_contig88610.20569.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: UPI0003719E47 (helix-turn-helix domain-containing protein n=1 Tax=Spirosoma panaciterrae TaxID=496058 RepID=UPI0003719E47) HSP 1 Score: 53.1 bits (126), Expect = 3.880e-6 Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 1 MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFL-TIFIEQAGWFDLKNYYL---PFKFLYGPVIYFYTKSIILKD 264 MS + ++ +IFQ F +LFL T +RGK +SN +LG + LG L T+ + + +F+ + L L+GP+++ +TKS+I +D Sbjct: 1 MSFGFTDVLLCFLIFQLLFVSLFLVTLDRGKRISNGLLGSFFAALGLNLLDTLLLVKGVYFNYPAWGLWGTDLVLLFGPLLWLHTKSVIYRD 92
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: A0A317IEM9_9BACT (HTH araC/xylS-type domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A317IEM9_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 5.290e-6 Identity = 30/92 (32.61%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 1 MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFLTIF--IEQAGWFD--LKNYYLPFKFLYGPVIYFYTKSIILKD 264 M ++ ++ ++IFQ LFLFT ++GK +SN +LG + L + L F IE+ ++ L + L+GP++Y YT+S+++KD Sbjct: 1 MIFSLTQGLLIIVIFQLILIALFLFTHDKGKKISNILLGTFFLSIALNLLDSFLLIEKIYLYNTALVAWGSCLPLLFGPLLYLYTRSVLIKD 92
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: A0A832BRE5_9BACT (AraC family transcriptional regulator n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A832BRE5_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 7.290e-6 Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 1 MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFL-TIFIEQAGWFDLKNYYL---PFKFLYGPVIYFYTKSIILKD 264 MS +I L+IFQ F + FLF+ ++GK VSN +LG++ L L + +IF+ + + ++ L LYGP+++ Y +S++ KD Sbjct: 1 MSFNFTEVLILLVIFQLLFISFFLFSHQKGKRVSNRLLGVFFLSLCLNLVDSIFLLKRVYHAYPSWALWGSSMPLLYGPLMFLYVQSVVYKD 92
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: A0A7Y2MM99_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2MM99_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 8.040e-6 Identity = 27/86 (31.40%), Postives = 48/86 (55.81%), Query Frame = 1 Query: 7 DTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFLTIFIEQAGWFDLKNYYL----PFKFLYGPVIYFYTKSI 252 +T+ + L+IFQ F ++FLFT+++G+ +SN +L + L LG L F+ +G+FD Y + P++ YT+S+ Sbjct: 2 NTVFQVLTGLVIFQILFISIFLFTSKKGRRISNFLLAFFFLSLGCGMLDYFLLISGFFDENTQYAFILNSLVIFHAPLLLLYTQSL 87
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: A0A1P9X154_9BACT (HTH araC/xylS-type domain-containing protein n=1 Tax=Spirosoma montaniterrae TaxID=1178516 RepID=A0A1P9X154_9BACT) HSP 1 Score: 50.8 bits (120), Expect = 2.520e-5 Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1 Query: 1 MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFLTIFIEQAG-WFDLKNYYL---PFKFLYGPVIYFYTKSIILKD 264 MS + ++ IFQ F +LFLF+ +RGK VSN +LG + L G L + G +F + L L+GP++Y +T+S+I +D Sbjct: 1 MSFNFTDILLCFTIFQLLFVSLFLFSLDRGKRVSNGLLGGFFLSFGLNLLDALLLLKGVYFAYPAWGLWGTNMALLFGPLLYLHTQSVIYRD 92
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: A0A317HCD9_9BACT (HTH araC/xylS-type domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A317HCD9_9BACT) HSP 1 Score: 50.4 bits (119), Expect = 3.450e-5 Identity = 29/95 (30.53%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 1 MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFLTIFIEQAGWFDLKNYYLPFK----------FLYGPVIYFYTKSII 255 M+ + + + L++FQ F +LFLF+ ++G+ VSN++LG + L++ L F+ LK Y+PF L+GP++Y Y +S++ Sbjct: 1 MNFSFSDILFVLVLFQLLFISLFLFSHQKGRRVSNALLGAFFLVVFLNLLDSFLL------LKRVYIPFPALAAWSSCFPLLFGPLLYLYAQSVL 89
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: UPI001A8FF1A7 (AraC family transcriptional regulator n=1 Tax=Muricauda sp. CAU 1633 TaxID=2816036 RepID=UPI001A8FF1A7) HSP 1 Score: 50.1 bits (118), Expect = 4.660e-5 Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 1 Query: 1 MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFLTIFIEQAGWFDLKNYYLP---FKFLYGPVIYFYTKSII 255 M+ I N + LI+FQ ++LFT + K VSN IL +L +L QFL + + G L+ + F FLYGP++Y Y+ S+I Sbjct: 1 MNIGIQNIVPILIVFQSTLFAIYLFTYKGPKKVSNRILAFFLAVLALQFLAL-LNLMGQTRLEEVFAIRCIFGFLYGPLLYLYSNSLI 87
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Match: UPI000B0DCBE8 (helix-turn-helix domain-containing protein n=1 Tax=Sediminibacter sp. Hel_I_10 TaxID=1392490 RepID=UPI000B0DCBE8) HSP 1 Score: 49.3 bits (116), Expect = 8.840e-5 Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1 Query: 112 LGIYLLILGSQFLTIFIEQAGWFDLKNY-----YLPFK--FLYGPVIYFYTKSIILKD 264 LG+++L+ G + AGW+ +KNY + PF+ FL GP+I+FYT+S++ KD Sbjct: 45 LGLFILLCGMYICPFMLGYAGWYSIKNYREFLFFTPFQQLFLIGPIIFFYTQSLLNKD 102 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88610.20569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig88610.20569.1 >prot_M-pyrifera_M_contig88610.20569.1 ID=prot_M-pyrifera_M_contig88610.20569.1|Name=mRNA_M-pyrifera_M_contig88610.20569.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp MSDTIVNSIIALIIFQCFFCTLFLFTTERGKSVSNSILGIYLLILGSQFLback to top mRNA from alignment at M-pyrifera_M_contig88610:487..753+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig88610.20569.1 ID=mRNA_M-pyrifera_M_contig88610.20569.1|Name=mRNA_M-pyrifera_M_contig88610.20569.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig88610:487..753+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig88610:487..753+ >mRNA_M-pyrifera_M_contig88610.20569.1 ID=mRNA_M-pyrifera_M_contig88610.20569.1|Name=mRNA_M-pyrifera_M_contig88610.20569.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig88610:487..753+ (Macrocystis pyrifera P11B4 male)back to top |