mRNA_M-pyrifera_M_contig88528.20553.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88528.20553.1
Unique NamemRNA_M-pyrifera_M_contig88528.20553.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: A0A6H5L5V8_9PHAE (MsrB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5V8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.410e-30
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVECTYSGGVFGGMA 162
            HLGHVFRGEGFGNPEPNERHCVNS SLAF+PEGKTDGPDAVECTY+G VFGG A
Sbjct:  173 HLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGRVFGGTA 226          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: A0A7S2V6B3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-18
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVECTYSGGVFG 153
            HLGHVFRGEGF NP PNERHCVNS S+AF+PEG+ D      CTY+G V+G
Sbjct:  179 HLGHVFRGEGFNNPPPNERHCVNSVSIAFLPEGEEDESKVQRCTYNGQVYG 229          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: A0A836C9K1_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.100e-17
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVE-CTYSGGVFG 153
            HLGHVFRGEGF NP PNERHCVNS S+ F+P GK  GP+ V+ CTYSG V+G
Sbjct:  172 HLGHVFRGEGFSNPPPNERHCVNSVSIGFIPRGK--GPEDVQKCTYSGPVYG 221          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: W7U3G1_9STRA (Peptide methionine sulfoxide reductase b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.090e-14
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVE-CTYSGGVF 150
            HLGHVFR EGFGNP P+ERHCVNS S+ FVPEG     DAV+ CTY G V+
Sbjct:  205 HLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT----DAVQPCTYEGPVY 251          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: W6KXY4_9TRYP (MsrB domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KXY4_9TRYP)

HSP 1 Score: 63.5 bits (153), Expect = 2.880e-11
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPE 96
            HLGHVFRGEGF NP PNERHCVNS S+ F+P+
Sbjct:  118 HLGHVFRGEGFKNPPPNERHCVNSSSIMFIPK 149          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: UPI0004F428E4 (putative methionine sulfoxide reductase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F428E4)

HSP 1 Score: 61.2 bits (147), Expect = 3.810e-11
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPE 96
            HLGHVFRGEGF NP PNERHCVNS S+ F P+
Sbjct:   41 HLGHVFRGEGFRNPPPNERHCVNSTSIHFRPQ 72          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: G0V291_TRYCI (Uncharacterized protein TCIL3000_11_12590 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0V291_TRYCI)

HSP 1 Score: 63.9 bits (154), Expect = 3.840e-11
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVP 93
            HLGHVFRGEGFGNP PNERHCVN  SL F P
Sbjct:  155 HLGHVFRGEGFGNPPPNERHCVNGSSLVFQP 185          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: A0A813KAL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAL6_POLGL)

HSP 1 Score: 63.2 bits (152), Expect = 9.760e-11
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVECTYSGGVFG 153
            H+GHVFRGE FG+P  +ERHCVNS SL F+P     G D V  TYSG V+G
Sbjct:  158 HMGHVFRGEAFGHPT-DERHCVNSLSLVFLP---AKGGDKVAPTYSGAVYG 204          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: A0A813HA73_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HA73_POLGL)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVECTYSGGVFGGMA 162
            H+GHVFRGE FG+P  +ERHCVNS SL F+P     G D V  TYSG V+G  A
Sbjct:  610 HMGHVFRGEAFGHPT-DERHCVNSLSLVFLP---AKGGDKVAPTYSGAVYGSGA 659          
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Match: S9WIR8_9TRYP (SelR domain containing protein, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=S9WIR8_9TRYP)

HSP 1 Score: 61.2 bits (147), Expect = 2.730e-10
Identity = 26/34 (76.47%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    1 HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGK 102
            HLGHVFRGEGF NP PNERHCVN  SL F P  K
Sbjct:  128 HLGHVFRGEGFHNPPPNERHCVNDTSLRFEPMSK 161          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88528.20553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5V8_9PHAE9.410e-3090.74MsrB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2V6B3_9STRA2.300e-1868.63Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A836C9K1_9STRA1.100e-1771.15Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
W7U3G1_9STRA1.090e-1468.63Peptide methionine sulfoxide reductase b5 n=2 Tax=... [more]
W6KXY4_9TRYP2.880e-1178.13MsrB domain-containing protein n=1 Tax=Phytomonas ... [more]
UPI0004F428E43.810e-1178.13putative methionine sulfoxide reductase n=1 Tax=Tr... [more]
G0V291_TRYCI3.840e-1183.87Uncharacterized protein TCIL3000_11_12590 n=1 Tax=... [more]
A0A813KAL6_POLGL9.760e-1160.78Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813HA73_POLGL2.230e-1059.26Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
S9WIR8_9TRYP2.730e-1076.47SelR domain containing protein, putative n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88528contigM-pyrifera_M_contig88528:439..603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue6.5e-23
Seed eggNOG ortholog2880.D7G3N8
KEGG koko:K07305
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-00_006660.1
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.2289119-CDS-M-pyrifera_M_contig88528:438..6031622816795.2289119-CDS-M-pyrifera_M_contig88528:438..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88528 439..603 -
1692278183.035446-CDS-M-pyrifera_M_contig88528:438..6031692278183.035446-CDS-M-pyrifera_M_contig88528:438..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88528 439..603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88528.20553.1prot_M-pyrifera_M_contig88528.20553.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88528 439..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88528.20553.1

>prot_M-pyrifera_M_contig88528.20553.1 ID=prot_M-pyrifera_M_contig88528.20553.1|Name=mRNA_M-pyrifera_M_contig88528.20553.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
HLGHVFRGEGFGNPEPNERHCVNSCSLAFVPEGKTDGPDAVECTYSGGVF
GGMA*
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mRNA from alignment at M-pyrifera_M_contig88528:439..603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88528.20553.1 ID=mRNA_M-pyrifera_M_contig88528.20553.1|Name=mRNA_M-pyrifera_M_contig88528.20553.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig88528:439..603- (Macrocystis pyrifera P11B4 male)
CACCTGGGACACGTGTTTCGAGGGGAGGGGTTCGGGAACCCAGAGCCAAA CGAGCGGCACTGCGTGAACTCTTGCTCTCTCGCCTTCGTGCCGGAGGGGA AAACGGACGGGCCCGACGCGGTGGAGTGCACCTACTCCGGAGGCGTTTTT GGGGGGATGGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88528:439..603-

>mRNA_M-pyrifera_M_contig88528.20553.1 ID=mRNA_M-pyrifera_M_contig88528.20553.1|Name=mRNA_M-pyrifera_M_contig88528.20553.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig88528:439..603- (Macrocystis pyrifera P11B4 male)
CACCTGGGACACGTGTTTCGAGGGGAGGGGTTCGGGAACCCAGAGCCAAA
CGAGCGGCACTGCGTGAACTCTTGCTCTCTCGCCTTCGTGCCGGAGGGGA
AAACGGACGGGCCCGACGCGGTGGAGTGCACCTACTCCGGAGGCGTTTTT
GGGGGGATGGCGTGACACCTGGGACACGTGTTTCGAGGGGAGGGGTTCGG
GAACCCAGAGCCAAACGAGCGGCACTGCGTGAACTCTTGCTCTCTCGCCT
TCGTGCCGGAGGGGAAAACGGACGGGCCCGACGCGGTGGAGTGCACCTAC
TCCGGAGGCGTTTTTGGGGGGATGGCGTGA
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