mRNA_M-pyrifera_M_contig882.20490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig882.20490.1
Unique NamemRNA_M-pyrifera_M_contig882.20490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig882.20490.1 vs. uniprot
Match: D7FIG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.930e-33
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 RVRLSLWVRDKGLALLSSSAV-ISLYKTLSSERPVERRKASACLSRVGRAVTSVQANEKEREADSQKIKDAVLPLLQFQAEAGGGSVAE 264
            RVR SLW+RDK LALLSSS V +SLYK LSSE  VERRKASAC+SR+GRAVT+VQANEKEREADS  IK+AV PLL FQ EAGGGSVA+
Sbjct:  409 RVRASLWLRDKALALLSSSPVLVSLYKALSSEEAVERRKASACISRIGRAVTAVQANEKEREADSNAIKEAVKPLLHFQPEAGGGSVAD 497
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig882.20490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIG6_ECTSI9.930e-3378.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig882contigM-pyrifera_M_contig882:29038..30447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7FIG6
KEGG koko:K19870,ko:K21991
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4151@1,KOG4151@2759,KOG4234@1,KOG4234@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.7996354-CDS-M-pyrifera_M_contig882:29037..291051622816791.7996354-CDS-M-pyrifera_M_contig882:29037..29105Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 29038..29105 +
1692278180.8389742-CDS-M-pyrifera_M_contig882:29037..291051692278180.8389742-CDS-M-pyrifera_M_contig882:29037..29105Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 29038..29105 +
1622816791.8107626-CDS-M-pyrifera_M_contig882:30243..304451622816791.8107626-CDS-M-pyrifera_M_contig882:30243..30445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 30244..30445 +
1692278180.857249-CDS-M-pyrifera_M_contig882:30243..304451692278180.857249-CDS-M-pyrifera_M_contig882:30243..30445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 30244..30445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig882.20490.1prot_M-pyrifera_M_contig882.20490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig882 29038..30445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig882.20490.1

>prot_M-pyrifera_M_contig882.20490.1 ID=prot_M-pyrifera_M_contig882.20490.1|Name=mRNA_M-pyrifera_M_contig882.20490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
RVRLSLWVRDKGLALLSSSAVISLYKTLSSERPVERRKASACLSRVGRAV
TSVQANEKEREADSQKIKDAVLPLLQFQAEAGGGSVAETK
back to top

mRNA from alignment at M-pyrifera_M_contig882:29038..30447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig882.20490.1 ID=mRNA_M-pyrifera_M_contig882.20490.1|Name=mRNA_M-pyrifera_M_contig882.20490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at M-pyrifera_M_contig882:29038..30447+ (Macrocystis pyrifera P11B4 male)
CGGGTGCGACTCAGCCTCTGGGTCAGGGACAAGGGACTGGCGCTGTTGTC
GTCTTCTGCCGTGATCAGGTAATGTACTGCAATTATGCCAACGTACTTCC
AGTGTACTACCGTGTACTGACAGTGTGCTGACAGTGTTTGTACTGCCAGT
ATCCTGTCAGGATACTGTACTGCCAGTGTACGTATTGCTAGAGTACAATT
ATTATTAGTGTACTTCCAGTGCACGGTAGACATATAGCGTTTTTTTCCGC
GCGTTGTGCTCTTCGTGTTGCGCAGTTGCTGCACCGTGCATTTCGCGGCA
GGCCTTGATTCGCGAACGCTGGGTCACGATGTCAGTTTCGAGTGAGGTGG
GACTAGTGTGCATGTGTGGCGTGCATCGAAAGCGGGGTAACACGCGTTCT
GGTGGTGAAAACTAACGCAGGAATACAACACCAATTTAAAACACGAGCGC
GCAAGTACACGACCACATACTTTCACGAGCACATGGATACACGGATGAAT
CAACGAACAAACACACGAGCGCGCAAATACACGAGCCGTTGGCAATGGGG
GTTTGTACAGTATGTAAAACATGTATGAGGCCCATTGTCGTAAGAGCCCT
GCCCGCTGTTTGGATACACGTCAGCTGTGTATCAGCATCACTGCAGTCAA
TACTTTCTGGAGCTTGCTCGAAGTGTGGGGCGATACCATTGTTAATTCTT
GGTCATCGTGATCCCCAATCATTCTATCATAGGGGCGAGGCCGGAGGCGC
GGTATTTTATAGGTCTGCGAGTTGCCGACTACGATTGCTCGGATGCTGGT
TGACCTAAGTGGACTAAAGTATCCCGAGGGAGACCGGAAGTGCCTCCGAA
GGATCCCGCTTGCTTTATTTAGCTACGTTTTACGCACAGCACATATTAAA
AACCAAAGTTGTCTTTTTCTGCAAGCAAGGAACCCCTAGTGGTGGAATGA
TTTGCCTCCGCTGCAACTGTCTGTGTTGCCTACAGTAGCAAACTAATAAC
TTTTCAGTGAATTGTATTACTGTCACAGTTAGCCAACTCACAGCTCTGCT
CTTTGGCCTGTGCTATCTATGCTATGGAGCAGATGATGCCCAGCACCGTG
CATCATTCTCATTGTAAGCACTGTGTTATCCACGCTCTACAACGGTATAG
CGGGCTCACCTCACCTCACCGCACCGTTCATATGCTGTTGACGTGCGTGA
TGACAGCCTGTACAAAACCCTGAGCAGCGAGAGGCCGGTCGAGAGGAGGA
AGGCATCTGCATGTCTCAGCCGGGTAGGCCGAGCGGTGACATCTGTCCAA
GCCAATGAAAAGGAGAGAGAGGCGGACTCTCAGAAGATCAAGGACGCCGT
GTTGCCTCTTCTCCAGTTTCAGGCGGAGGCGGGTGGTGGTAGTGTTGCAG
AAACGAAAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig882:29038..30447+

>mRNA_M-pyrifera_M_contig882.20490.1 ID=mRNA_M-pyrifera_M_contig882.20490.1|Name=mRNA_M-pyrifera_M_contig882.20490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig882:29038..30447+ (Macrocystis pyrifera P11B4 male)
CGGGTGCGACTCAGCCTCTGGGTCAGGGACAAGGGACTGGCGCTGTTGTC
GTCTTCTGCCGTGATCAGCGGGTGCGACTCAGCCTCTGGGTCAGGGACAA
GGGACTGGCGCTGTTGTCGTCTTCTGCCGTGATCAGCCTGTACAAAACCC
TGAGCAGCGAGAGGCCGGTCGAGAGGAGGAAGGCATCTGCATGTCTCAGC
CGGGTAGGCCGAGCGGTGACATCTGTCCAAGCCAATGAAAAGGAGAGAGA
GGCGGACTCTCAGAAGATCAAGGACGCCGTGTTGCCTCTTCTCCAGTTTC
AGGCGGAGGCGGGTGGTGGTAGTGTTGCAGAAACGAAACCTGTACAAAAC
CCTGAGCAGCGAGAGGCCGGTCGAGAGGAGGAAGGCATCTGCATGTCTCA
GCCGGGTAGGCCGAGCGGTGACATCTGTCCAAGCCAATGAAAAGGAGAGA
GAGGCGGACTCTCAGAAGATCAAGGACGCCGTGTTGCCTCTTCTCCAGTT
TCAGGCGGAGGCGGGTGGTGGTAGTGTTGCAGAAACGAAA
back to top