mRNA_M-pyrifera_M_contig88133.20474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88133.20474.1
Unique NamemRNA_M-pyrifera_M_contig88133.20474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A7Y2GKT2_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKT2_9ACTN)

HSP 1 Score: 482 bits (1241), Expect = 2.040e-169
Identity = 247/273 (90.48%), Postives = 256/273 (93.77%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDD 819
            R+WIEKASDIAEEYYASFTLDRSAKKHLGMLS EGGVEIETVAEENPDAI+KIW+DPVDGLTEAACREWV  ANL   AVEGT+ ILQ+LYTAYTEGDADL EINPLILTPEGKVHVLDAKVTLDGNS FRHEDYAQYDETQ RDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGG PANFLDIGGGANADVM+GALEVINNDP VKSIFINIFGGITRGEEVANGILEAMQRV+I +PIVIRLDGTNA+EGR IL P L D
Sbjct:   87 RVWIEKASDIAEEYYASFTLDRSAKKHLGMLSAEGGVEIETVAEENPDAISKIWVDPVDGLTEAACREWVEKANLNPDAVEGTITILQQLYTAYTEGDADLCEINPLILTPEGKVHVLDAKVTLDGNSTFRHEDYAQYDETQTRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGKPANFLDIGGGANADVMSGALEVINNDPNVKSIFINIFGGITRGEEVANGILEAMQRVDIGAPIVIRLDGTNAEEGRAILEPNLSD 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A2D8GIB9_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=9 Tax=Actinobacteria TaxID=201174 RepID=A0A2D8GIB9_9ACTN)

HSP 1 Score: 477 bits (1228), Expect = 1.750e-167
Identity = 244/273 (89.38%), Postives = 254/273 (93.04%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDD 819
            R+WIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAE NPDAIAKIW+ PV GL EA  R WVAAANLP+AAVEG VDILQKLYTAYT+GD DLVEINPLILTPEGKVHVLDAKVTLDGNS FRHEDY Q+DETQPRD+RE+ AHAKGLQYVGL+GSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGA+EVINNDP VKSIFIN FGGITRGEEVANGILEAMQRVEID PIVIRLDGTNA+EGR IL P L D
Sbjct:   87 RVWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEXNPDAIAKIWVXPVVGLDEATTRAWVAAANLPEAAVEGAVDILQKLYTAYTDGDCDLVEINPLILTPEGKVHVLDAKVTLDGNSTFRHEDYTQFDETQPRDDREQXAHAKGLQYVGLDGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGAMEVINNDPNVKSIFINXFGGITRGEEVANGILEAMQRVEIDXPIVIRLDGTNAEEGRAILAPNLSD 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A6B1AZD0_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AZD0_9ACTN)

HSP 1 Score: 477 bits (1227), Expect = 2.480e-167
Identity = 241/274 (87.96%), Postives = 259/274 (94.53%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDDK 822
            R+WIEKASDIAEEYYASFTLDRSAKKHLGMLS EGGVEIETVAE NPDAIAKIWIDP+DGL+EA CR+WVAAA LP+ AVEGTV++L KLY AY+EGDADLVEINPLILTPEG VHVLDAKVTLDGNSEFRH DY+QYD TQ RDERE+AAHAKGLQYVGL+GSVGVIANGAGLAMSTVDVVNQVGG+PANFLDIGGGANADVMAGALEVINNDPAVK+IFINIFGGITRGEE+A+GILEAM+RVEIDSPIVIRLDGTNA++GR IL P L DK
Sbjct:   87 RVWIEKASDIAEEYYASFTLDRSAKKHLGMLSVEGGVEIETVAETNPDAIAKIWIDPIDGLSEATCRDWVAAAKLPEPAVEGTVEVLLKLYRAYSEGDADLVEINPLILTPEGSVHVLDAKVTLDGNSEFRHPDYSQYDATQSRDEREQAAHAKGLQYVGLDGSVGVIANGAGLAMSTVDVVNQVGGNPANFLDIGGGANADVMAGALEVINNDPAVKAIFINIFGGITRGEEIASGILEAMKRVEIDSPIVIRLDGTNANQGRAILEPHLTDK 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A2E5ZDV0_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZDV0_9ACTN)

HSP 1 Score: 474 bits (1220), Expect = 5.240e-166
Identity = 241/273 (88.28%), Postives = 257/273 (94.14%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDD 819
            R+WIEKASDIAEEYYASFTLDRSAKKHLGMLS EGGVEIETVAEENPDAIAK+WIDPVDGL EA  R+WVAAA LP+AAVEGTV ILQ+LYTAY +GDADLVEINPLILTP+ +VHVLDAKVTLDGNS FRHEDYA YDETQ RDERE AAHA+GLQYVGL+GSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAV+SIFINIFGGITRGEEVANGI+EA+QRV+ID+PIVIRLDGTNA+EGR IL P L D
Sbjct:   87 RVWIEKASDIAEEYYASFTLDRSAKKHLGMLSAEGGVEIETVAEENPDAIAKVWIDPVDGLDEATARDWVAAARLPEAAVEGTVAILQQLYTAYVDGDADLVEINPLILTPDDRVHVLDAKVTLDGNSTFRHEDYAAYDETQTRDERETAAHARGLQYVGLDGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVRSIFINIFGGITRGEEVANGIVEALQRVDIDAPIVIRLDGTNAEEGRAILEPHLSD 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A520XZI6_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A520XZI6_9ACTN)

HSP 1 Score: 472 bits (1214), Expect = 2.440e-165
Identity = 239/274 (87.23%), Postives = 257/274 (93.80%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDDK 822
            R+W+EKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIW+DPV GL+E A R+WVAAA LP+AAVEG+VDILQKLYTAYT+GDADLVEINPLILTPEGKVHVLDAKVTLDG+SEFRH +Y QYD TQ RDERE AAH KGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGG PANFLDIGGGANADVMAGALEVINNDP+VK+IFINIFGGITRGEEVA GI+EAM+RV IDSPIV+RLDGTNA EGR++L P L D+
Sbjct:   87 RVWVEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWVDPVVGLSEQAVRDWVAAARLPEAAVEGSVDILQKLYTAYTDGDADLVEINPLILTPEGKVHVLDAKVTLDGSSEFRHPEYEQYDATQTRDEREAAAHEKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGKPANFLDIGGGANADVMAGALEVINNDPSVKAIFINIFGGITRGEEVAEGIIEAMKRVSIDSPIVVRLDGTNAQEGRDMLAPHLTDR 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A2E0DKU7_9FLAO (Succinate--CoA ligase [ADP-forming] subunit beta n=11 Tax=Bacteria TaxID=2 RepID=A0A2E0DKU7_9FLAO)

HSP 1 Score: 471 bits (1213), Expect = 3.350e-165
Identity = 240/274 (87.59%), Postives = 254/274 (92.70%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDDK 822
            R+WIEKASDIAEEYYASFTLD SAKKHLGMLSKEGGVEIETVAEENPDAIAKIW+DPVDGL+E  C+ WV AANLP  A +GTVDIL KLY AYT+GDADLVEINPLILTPEGKVHVLDAKVTLDGNS FRHE+Y QYDETQ RDERE AAH+KGLQYVGL+GSVGVIANGAGLAMSTVDV+NQVGG PANFLDIGGGANADVMAGALEVINNDP VK+IFINIFGGITRGEEVANGILEAM+RV+I+SPIVIRLDGTNADEGR IL P L DK
Sbjct:   87 RVWIEKASDIAEEYYASFTLDXSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWVDPVDGLSEDQCKAWVEAANLPAEAFDGTVDILLKLYEAYTDGDADLVEINPLILTPEGKVHVLDAKVTLDGNSVFRHENYEQYDETQTRDERETAAHSKGLQYVGLDGSVGVIANGAGLAMSTVDVINQVGGKPANFLDIGGGANADVMAGALEVINNDPNVKAIFINIFGGITRGEEVANGILEAMKRVKIESPIVIRLDGTNADEGRAILEPNLSDK 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A351LXZ3_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=8 Tax=root TaxID=1 RepID=A0A351LXZ3_9ACTN)

HSP 1 Score: 471 bits (1211), Expect = 9.590e-165
Identity = 239/273 (87.55%), Postives = 257/273 (94.14%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDD 819
            R+WIE ASDIAEEYYASFTLDRSA+KHLGMLS EGGVEIETVAEENPDAIAK+WIDPVDGL EAA R WVAAANLP+AAVEGTVDILQKLYTAY +GDADLVEINPLILTP+G+VHVLDAKVTLDG++ FRHEDYA +DETQ RDERE AAHA+GLQYVGL+GSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAV+SIFINIFGGITRGEEVANGI+ A++RV ID+PIVIRLDGTNA+EGR IL P L D
Sbjct:   87 RVWIEVASDIAEEYYASFTLDRSARKHLGMLSAEGGVEIETVAEENPDAIAKVWIDPVDGLDEAAARAWVAAANLPEAAVEGTVDILQKLYTAYVDGDADLVEINPLILTPDGRVHVLDAKVTLDGSAVFRHEDYAVFDETQTRDERETAAHARGLQYVGLDGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVRSIFINIFGGITRGEEVANGIIGALERVRIDAPIVIRLDGTNAEEGRAILEPHLSD 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A2E1JEH1_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1JEH1_9ACTN)

HSP 1 Score: 470 bits (1209), Expect = 1.360e-164
Identity = 237/274 (86.50%), Postives = 253/274 (92.34%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDDK 822
            R+WIEKASDI EEYYASFTLDRSAKKHLGMLSKEGGVEIETVAE NP+AIAKIW+DPV GL++ AC EWV+ A LPD AVEGT++IL KLYTAYTEGDADLVEINPLILTP+G VHVLDAKVTLDGNS+FRHEDY QYD+TQ RDERE AAHAKGLQYVGL+GSVGVIANGAGLAMSTVDV+NQVGG PANFLDIGGGANADVMAGALEVINNDP VK+IFINIFGGITRGEEVANGILEAM RV+I SPIVIRLDGTNADEGR IL P L +K
Sbjct:   87 RVWIEKASDIQEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAETNPEAIAKIWVDPVVGLSKEACAEWVSQAQLPDQAVEGTIEILMKLYTAYTEGDADLVEINPLILTPQGNVHVLDAKVTLDGNSQFRHEDYGQYDQTQTRDERETAAHAKGLQYVGLDGSVGVIANGAGLAMSTVDVINQVGGQPANFLDIGGGANADVMAGALEVINNDPNVKAIFINIFGGITRGEEVANGILEAMNRVDISSPIVIRLDGTNADEGRAILEPNLSEK 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A355DDN7_9ACTN (Succinate--CoA ligase [ADP-forming] subunit beta n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DDN7_9ACTN)

HSP 1 Score: 468 bits (1203), Expect = 1.370e-163
Identity = 238/273 (87.18%), Postives = 255/273 (93.41%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDD 819
            R+WIEKASDIAEEYYASFTLDRSA+KHLGMLS EGGVEIETVAE+NPDAIAKIW+DPVDGL E ACREWVAAANLPDAAV+GTV I+ +LYTAY EGDADLVEINPLILTPEG+VHVLDAKVTLDGNS FRHE YA +DETQ RDERE AAHA GLQYVGL+GSVGVIANGAGLAMSTVDVVNQVGG+ ANFLDIGGGANADVMAGALEVINNDPAV+SIFINIFGGITRG+EVANGILEA+ RV+I++PIVIRLDGTNADEGR IL P L D
Sbjct:   87 RVWIEKASDIAEEYYASFTLDRSARKHLGMLSAEGGVEIETVAEQNPDAIAKIWVDPVDGLDEEACREWVAAANLPDAAVDGTVRIMLQLYTAYVEGDADLVEINPLILTPEGEVHVLDAKVTLDGNSVFRHEGYAAFDETQARDERETAAHAGGLQYVGLDGSVGVIANGAGLAMSTVDVVNQVGGAAANFLDIGGGANADVMAGALEVINNDPAVRSIFINIFGGITRGDEVANGILEALSRVQIEAPIVIRLDGTNADEGRAILEPHLSD 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Match: A0A3M2FZR0_ACTSX (Succinate--CoA ligase [ADP-forming] subunit beta n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2FZR0_ACTSX)

HSP 1 Score: 464 bits (1194), Expect = 2.600e-162
Identity = 234/274 (85.40%), Postives = 253/274 (92.34%), Query Frame = 1 
Query:    1 RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAIAKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDADLVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEAAHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSPIVIRLDGTNADEGREILRPKLDDK 822
            RLWIEKASDIA+E+YASFTLDRSAKKHLGMLS EGGVEIETVA ENPDAIAKIWIDPVDGL EA CR WV AA LP  AVEG V++L  LYTAYT+GDADLVE+NPLILTP+G+VHVLDAKVTLDGN+ FRH DY QYD TQPRDERE+AAHAKGLQYVGL+G+VGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVM+ ALEVINNDPAV+SI INIFGGITRGEE+ANGI+EAM+RV+I SPIVIRLDGTNADEGREILRP L D+
Sbjct:   87 RLWIEKASDIADEFYASFTLDRSAKKHLGMLSAEGGVEIETVAAENPDAIAKIWIDPVDGLDEATCRAWVEAARLPAEAVEGAVEVLLGLYTAYTDGDADLVEVNPLILTPDGRVHVLDAKVTLDGNAVFRHPDYEQYDATQPRDEREKAAHAKGLQYVGLDGNVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGANADVMSAALEVINNDPAVRSILINIFGGITRGEEIANGIVEAMRRVDISSPIVIRLDGTNADEGREILRPHLSDR 360
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88133.20474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2GKT2_9ACTN2.040e-16990.48Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A2D8GIB9_9ACTN1.750e-16789.38Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A6B1AZD0_9ACTN2.480e-16787.96Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A2E5ZDV0_9ACTN5.240e-16688.28Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A520XZI6_9ACTN2.440e-16587.23Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A2E0DKU7_9FLAO3.350e-16587.59Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A351LXZ3_9ACTN9.590e-16587.55Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A2E1JEH1_9ACTN1.360e-16486.50Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A355DDN7_9ACTN1.370e-16387.18Succinate--CoA ligase [ADP-forming] subunit beta n... [more]
A0A3M2FZR0_ACTSX2.600e-16285.40Succinate--CoA ligase [ADP-forming] subunit beta n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88133contigM-pyrifera_M_contig88133:3..824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score414.5
Seed ortholog evalue4e-113
Seed eggNOG ortholog1229780.BN381_130057
Preferred namesucC
KEGG rclassRC00004,RC00014
KEGG koko:K01903
KEGG ReactionR00405,R02404
KEGG Pathwayko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00173,M00374,M00620
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
EggNOG OGs2GKSB@201174,3UWCT@52018,COG0045@1,COG0045@2
EC6.2.1.5
COG Functional cat.F
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.9431956-CDS-M-pyrifera_M_contig88133:2..8241622816790.9431956-CDS-M-pyrifera_M_contig88133:2..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88133 3..824 +
1692278180.3128407-CDS-M-pyrifera_M_contig88133:2..8241692278180.3128407-CDS-M-pyrifera_M_contig88133:2..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88133 3..824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88133.20474.1prot_M-pyrifera_M_contig88133.20474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88133 3..824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88133.20474.1

>prot_M-pyrifera_M_contig88133.20474.1 ID=prot_M-pyrifera_M_contig88133.20474.1|Name=mRNA_M-pyrifera_M_contig88133.20474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
RLWIEKASDIAEEYYASFTLDRSAKKHLGMLSKEGGVEIETVAEENPDAI
AKIWIDPVDGLTEAACREWVAAANLPDAAVEGTVDILQKLYTAYTEGDAD
LVEINPLILTPEGKVHVLDAKVTLDGNSEFRHEDYAQYDETQPRDEREEA
AHAKGLQYVGLEGSVGVIANGAGLAMSTVDVVNQVGGSPANFLDIGGGAN
ADVMAGALEVINNDPAVKSIFINIFGGITRGEEVANGILEAMQRVEIDSP
IVIRLDGTNADEGREILRPKLDDK
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mRNA from alignment at M-pyrifera_M_contig88133:3..824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88133.20474.1 ID=mRNA_M-pyrifera_M_contig88133.20474.1|Name=mRNA_M-pyrifera_M_contig88133.20474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig88133:3..824+ (Macrocystis pyrifera P11B4 male)
CGCCTCTGGATCGAGAAGGCCTCCGACATCGCCGAGGAGTACTACGCCAG
CTTCACCCTCGATCGCTCGGCCAAGAAGCATCTGGGCATGCTCTCCAAGG
AGGGCGGTGTCGAGATCGAGACCGTCGCCGAGGAGAATCCCGACGCCATC
GCCAAGATCTGGATCGACCCGGTCGACGGCCTCACCGAAGCGGCCTGCCG
CGAGTGGGTCGCCGCCGCGAACCTGCCCGACGCAGCGGTCGAGGGCACGG
TCGACATCCTCCAGAAGCTCTACACCGCCTACACCGAGGGCGACGCCGAT
CTCGTCGAGATCAACCCGCTGATCCTCACCCCCGAAGGCAAGGTCCACGT
CCTCGACGCCAAGGTCACCCTCGACGGCAACAGCGAGTTCCGCCACGAGG
ACTACGCCCAGTACGACGAGACCCAGCCCCGCGACGAGCGCGAAGAGGCC
GCCCATGCGAAGGGCCTGCAATACGTCGGCCTCGAAGGCAGCGTCGGCGT
GATCGCCAACGGCGCGGGCCTGGCCATGAGCACGGTCGACGTGGTCAACC
AGGTGGGCGGCAGCCCCGCCAACTTCCTCGACATCGGCGGCGGCGCCAAT
GCCGACGTGATGGCCGGTGCGCTCGAAGTGATCAACAACGATCCGGCCGT
GAAGTCGATCTTCATCAACATCTTCGGTGGCATCACCCGAGGTGAAGAGG
TCGCCAACGGCATCCTCGAAGCGATGCAGCGGGTCGAGATCGACTCGCCC
ATCGTGATCCGTCTCGACGGAACCAACGCCGACGAGGGCCGCGAGATCCT
GCGCCCCAAGCTCGACGACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88133:3..824+

>mRNA_M-pyrifera_M_contig88133.20474.1 ID=mRNA_M-pyrifera_M_contig88133.20474.1|Name=mRNA_M-pyrifera_M_contig88133.20474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig88133:3..824+ (Macrocystis pyrifera P11B4 male)
CGCCTCTGGATCGAGAAGGCCTCCGACATCGCCGAGGAGTACTACGCCAG
CTTCACCCTCGATCGCTCGGCCAAGAAGCATCTGGGCATGCTCTCCAAGG
AGGGCGGTGTCGAGATCGAGACCGTCGCCGAGGAGAATCCCGACGCCATC
GCCAAGATCTGGATCGACCCGGTCGACGGCCTCACCGAAGCGGCCTGCCG
CGAGTGGGTCGCCGCCGCGAACCTGCCCGACGCAGCGGTCGAGGGCACGG
TCGACATCCTCCAGAAGCTCTACACCGCCTACACCGAGGGCGACGCCGAT
CTCGTCGAGATCAACCCGCTGATCCTCACCCCCGAAGGCAAGGTCCACGT
CCTCGACGCCAAGGTCACCCTCGACGGCAACAGCGAGTTCCGCCACGAGG
ACTACGCCCAGTACGACGAGACCCAGCCCCGCGACGAGCGCGAAGAGGCC
GCCCATGCGAAGGGCCTGCAATACGTCGGCCTCGAAGGCAGCGTCGGCGT
GATCGCCAACGGCGCGGGCCTGGCCATGAGCACGGTCGACGTGGTCAACC
AGGTGGGCGGCAGCCCCGCCAACTTCCTCGACATCGGCGGCGGCGCCAAT
GCCGACGTGATGGCCGGTGCGCTCGAAGTGATCAACAACGATCCGGCCGT
GAAGTCGATCTTCATCAACATCTTCGGTGGCATCACCCGAGGTGAAGAGG
TCGCCAACGGCATCCTCGAAGCGATGCAGCGGGTCGAGATCGACTCGCCC
ATCGTGATCCGTCTCGACGGAACCAACGCCGACGAGGGCCGCGAGATCCT
GCGCCCCAAGCTCGACGACAAGCGCCTCTGGATCGAGAAGGCCTCCGACA
TCGCCGAGGAGTACTACGCCAGCTTCACCCTCGATCGCTCGGCCAAGAAG
CATCTGGGCATGCTCTCCAAGGAGGGCGGTGTCGAGATCGAGACCGTCGC
CGAGGAGAATCCCGACGCCATCGCCAAGATCTGGATCGACCCGGTCGACG
GCCTCACCGAAGCGGCCTGCCGCGAGTGGGTCGCCGCCGCGAACCTGCCC
GACGCAGCGGTCGAGGGCACGGTCGACATCCTCCAGAAGCTCTACACCGC
CTACACCGAGGGCGACGCCGATCTCGTCGAGATCAACCCGCTGATCCTCA
CCCCCGAAGGCAAGGTCCACGTCCTCGACGCCAAGGTCACCCTCGACGGC
AACAGCGAGTTCCGCCACGAGGACTACGCCCAGTACGACGAGACCCAGCC
CCGCGACGAGCGCGAAGAGGCCGCCCATGCGAAGGGCCTGCAATACGTCG
GCCTCGAAGGCAGCGTCGGCGTGATCGCCAACGGCGCGGGCCTGGCCATG
AGCACGGTCGACGTGGTCAACCAGGTGGGCGGCAGCCCCGCCAACTTCCT
CGACATCGGCGGCGGCGCCAATGCCGACGTGATGGCCGGTGCGCTCGAAG
TGATCAACAACGATCCGGCCGTGAAGTCGATCTTCATCAACATCTTCGGT
GGCATCACCCGAGGTGAAGAGGTCGCCAACGGCATCCTCGAAGCGATGCA
GCGGGTCGAGATCGACTCGCCCATCGTGATCCGTCTCGACGGAACCAACG
CCGACGAGGGCCGCGAGATCCTGCGCCCCAAGCTCGACGACAAG
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