mRNA_M-pyrifera_M_contig88016.20442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88016.20442.1
Unique NamemRNA_M-pyrifera_M_contig88016.20442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A359ENT8_9GAMM (Conjugative coupling factor TraD, PFGI-1 class (Fragment) n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A359ENT8_9GAMM)

HSP 1 Score: 471 bits (1211), Expect = 9.150e-166
Identity = 242/249 (97.19%), Postives = 249/249 (100.00%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            ASKISERNLAAALRGRDR+AIALMRYLQAQDLYDPVLEGL+SAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLD+QDPRPIFEWL+VIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAG+VPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTL+MLRVKE+ATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD
Sbjct:    1 ASKISERNLAAALRGRDRQAIALMRYLQAQDLYDPVLEGLLSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDQQDPRPIFEWLNVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGTVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLIMLRVKEVATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 249          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A2N5Y4L4_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A2N5Y4L4_9GAMM)

HSP 1 Score: 464 bits (1195), Expect = 2.540e-158
Identity = 240/249 (96.39%), Postives = 245/249 (98.39%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A+KISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQD RPIFEWL +IQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAG+VPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTL+MLRVKELATAEMLTDQLPRVEV TLMSVSGVDDS+DP SGVD
Sbjct:  351 AAKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDARPIFEWLQIIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGTVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLIMLRVKELATAEMLTDQLPRVEVNTLMSVSGVDDSADPASGVD 599          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A370DTS1_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A370DTS1_9GAMM)

HSP 1 Score: 431 bits (1108), Expect = 2.770e-145
Identity = 220/248 (88.71%), Postives = 235/248 (94.76%), Query Frame = 1
Query:    4 SKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            SKISERNL AALRGR +EAIALMR+LQ QDLYDPVL+GLVSAFKYDKTYFDKIVSSVGPLMEKLTTG+IA LISPDYLDEQD RPIFEW++VI+RKGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV G    + PTIS+HADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNT++MLRVKELATAEMLTDQLP+VEV TLMSVSGV+DSSDP SG+D
Sbjct:  347 SKISERNLPAALRGRSKEAIALMRHLQTQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPDYLDEQDTRPIFEWMEVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVDGDSIDTPPTISMHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTMIMLRVKELATAEMLTDQLPKVEVFTLMSVSGVNDSSDPGSGID 594          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: UPI0004B90570 (type IV conjugative transfer system coupling protein TraD n=1 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=UPI0004B90570)

HSP 1 Score: 423 bits (1088), Expect = 3.310e-142
Identity = 215/249 (86.35%), Postives = 235/249 (94.38%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A  I+ERNL  ALRGR+R+AIALMR+LQAQD YDPVL+GL+SAFKYDKTYFDKIVSSVGPLMEKLTTG+IA LISP+YL+E+D RPIFEW++VI+RKGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGVPG    + PTISLHADEFNELIGDEF+PLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTL+MLRVKE+ATAEMLT+QLPRVEV TLMSVSGVDDSS+P SGVD
Sbjct:  351 AGSINERNLTPALRGRNRDAIALMRHLQAQDHYDPVLDGLMSAFKYDKTYFDKIVSSVGPLMEKLTTGNIAELISPNYLNEEDTRPIFEWMEVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVPGETENTPPTISLHADEFNELIGDEFIPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLIMLRVKEMATAEMLTEQLPRVEVFTLMSVSGVDDSSEPGSGVD 599          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A4A4G6_9GAMM (Conjugative coupling factor TraD, TOL family n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4A4G6_9GAMM)

HSP 1 Score: 422 bits (1084), Expect = 1.710e-141
Identity = 221/256 (86.33%), Postives = 235/256 (91.80%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGV--PGAEAG-----SVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A  ISERNL+ ALRGRDR+AIALMRYLQAQDLYDPV++GL+SAFKYDKTYFDKIVSSVGPLMEKLTTG IA LISPDYL + D RPIFEWLDVI+R GIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV  P AE G     S+PTIS+HADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEA+IGNRAKAGQVAGNFNT++MLRVKELATAEMLTDQL RVEV+TLMSVSGV DSSDP SGVD
Sbjct:  351 AGNISERNLSTALRGRDRKAIALMRYLQAQDLYDPVMDGLLSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPDYLSDNDNRPIFEWLDVIRRGGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVTDPNAEPGVQPQASLPTISMHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEAKIGNRAKAGQVAGNFNTMIMLRVKELATAEMLTDQLSRVEVLTLMSVSGVSDSSDPLSGVD 606          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A3M1CBU3_9PROT (Conjugative coupling factor TraD, PFGI-1 class n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3M1CBU3_9PROT)

HSP 1 Score: 418 bits (1074), Expect = 5.490e-140
Identity = 216/256 (84.38%), Postives = 234/256 (91.41%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGV-------PGAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A KISERNL++AL+GRDR+AIA+MRYLQAQDLYDPVL+GLVSAFKYDKTYFDKIVSSVGPLMEKLTTG IA LISPDYL++ D RPIFEWLDVI+R GIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV       P      VPTIS+HADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEA+IG+RAKAGQVAGNFNT++MLRVKELATAEMLTDQL RVEV TLM+VSGV+DSSDP SG+D
Sbjct:  351 AGKISERNLSSALKGRDRDAIAMMRYLQAQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPDYLNDDDSRPIFEWLDVIRRNGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVADPADDTPTRNPTRVPTISMHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEAKIGSRAKAGQVAGNFNTMIMLRVKELATAEMLTDQLSRVEVFTLMNVSGVNDSSDPMSGID 606          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A2E6LLS6_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LLS6_9GAMM)

HSP 1 Score: 416 bits (1070), Expect = 2.020e-139
Identity = 219/254 (86.22%), Postives = 232/254 (91.34%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGV---PGAEAGS--VPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A K+SERNL AALRGR REA+AL+RYLQAQD YDPVL+GL+SAFKYDKTYFDKIVSSVGPLMEKLTTG IA LISPDYL +   RPIFEW DVI+RKGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYK GV   PG EA    +PTISLHADEFNELIG+EFVPLLNKAGGAGFQVTAYTQTWSDVEARIG+R+KAGQVAGNFNTL+MLRVKELATAEMLTDQLPRVEV TLMSVSGVDDSSDP SGVD
Sbjct:  351 AEKVSERNLPAALRGRHREAVALLRYLQAQDFYDPVLDGLISAFKYDKTYFDKIVSSVGPLMEKLTTGRIAELISPDYLSDDGRRPIFEWNDVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKQGVAGIPGDEASDPRLPTISLHADEFNELIGEEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGSRSKAGQVAGNFNTLIMLRVKELATAEMLTDQLPRVEVFTLMSVSGVDDSSDPGSGVD 604          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A2N6CW44_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=2 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=A0A2N6CW44_9GAMM)

HSP 1 Score: 416 bits (1068), Expect = 3.810e-139
Identity = 217/256 (84.77%), Postives = 232/256 (90.62%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPG-------AEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A+   ERNL  +LRGR+ EAIALMR+LQ QDLYDPVL+GLVSAFKYDKTYFDKIVSSVGPLMEKLTTG IA LISPDYLDE DPRPIFEW+DVI+RKGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV         A A ++PTIS+HADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIG+RAKAGQVAGN NTL+MLRVKELATAEMLTDQLP+VEV TLMSVSGVDDSSDP SG+D
Sbjct:  346 AANTKERNLPNSLRGRNLEAIALMRHLQEQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPDYLDEADPRPIFEWMDVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVEADPINLHKAAAYTLPTISMHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGSRAKAGQVAGNVNTLVMLRVKELATAEMLTDQLPKVEVFTLMSVSGVDDSSDPGSGID 601          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: UPI00117A1B5F (type IV conjugative transfer system coupling protein TraD n=3 Tax=Solemya velum gill symbiont TaxID=2340 RepID=UPI00117A1B5F)

HSP 1 Score: 412 bits (1058), Expect = 5.100e-139
Identity = 216/256 (84.38%), Postives = 231/256 (90.23%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVP-------GAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A+ I ERNL  +LRGR+ EAIALMR+LQ QDLYDPVL+GLVSAFKYDKTYFDKIVSSVGPLMEKLTTG IA LISP+YLDE D RPIFEW+DVI+RKGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV           + ++PTIS+HADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIG+RAKAGQVAGNFNTL+MLRVKELATAEMLTDQL RVEV TLMSVSGVDDSSDP SGVD
Sbjct:  238 AANIKERNLPNSLRGRNNEAIALMRHLQEQDLYDPVLDGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGKIAELISPNYLDETDSRPIFEWVDVIRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVDVDPISATQVTSNTMPTISMHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGSRAKAGQVAGNFNTLIMLRVKELATAEMLTDQLSRVEVFTLMSVSGVDDSSDPGSGVD 493          
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Match: A0A2E7C1V0_9GAMM (Conjugative coupling factor TraD, PFGI-1 class n=17 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7C1V0_9GAMM)

HSP 1 Score: 405 bits (1040), Expect = 6.410e-135
Identity = 212/258 (82.17%), Postives = 227/258 (87.98%), Query Frame = 1
Query:    1 ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTYFDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIVYVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGV---------PGAEAGSVPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVAGNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD 747
            A+ I ERNL  ALRGR  EAIA MR LQ + +YDPVL+GL+SAFKYDKTYFDKIVSSVGPLMEKLTTG+IA LISPDY DE D RPIFEW+DV++RKGIVYVGLDALTDTTVASAVGN+MFADLVSVAGHIYKHGV         P  ++ S PTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIG+RAKAGQVAGNFNTL+MLRVKEL TA MLT+QLPRVEV TLMSVSGVDDSSDP SGVD
Sbjct:  346 AADIKERNLPNALRGRSMEAIACMRLLQEKAIYDPVLDGLISAFKYDKTYFDKIVSSVGPLMEKLTTGTIAGLISPDYQDEHDARPIFEWMDVVRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHGVAAKDTDTPDPETKSRSTPTISLHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGSRAKAGQVAGNFNTLLMLRVKELDTAAMLTEQLPRVEVFTLMSVSGVDDSSDPGSGVD 603          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88016.20442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A359ENT8_9GAMM9.150e-16697.19Conjugative coupling factor TraD, PFGI-1 class (Fr... [more]
A0A2N5Y4L4_9GAMM2.540e-15896.39Conjugative coupling factor TraD, PFGI-1 class n=6... [more]
A0A370DTS1_9GAMM2.770e-14588.71Conjugative coupling factor TraD, PFGI-1 class n=1... [more]
UPI0004B905703.310e-14286.35type IV conjugative transfer system coupling prote... [more]
A4A4G6_9GAMM1.710e-14186.33Conjugative coupling factor TraD, TOL family n=1 T... [more]
A0A3M1CBU3_9PROT5.490e-14084.38Conjugative coupling factor TraD, PFGI-1 class n=2... [more]
A0A2E6LLS6_9GAMM2.020e-13986.22Conjugative coupling factor TraD, PFGI-1 class n=1... [more]
A0A2N6CW44_9GAMM3.810e-13984.77Conjugative coupling factor TraD, PFGI-1 class n=2... [more]
UPI00117A1B5F5.100e-13984.38type IV conjugative transfer system coupling prote... [more]
A0A2E7C1V0_9GAMM6.410e-13582.17Conjugative coupling factor TraD, PFGI-1 class n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88016contigM-pyrifera_M_contig88016:77..823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score425.6
Seed ortholog evalue1.6e-116
Seed eggNOG ortholog314285.KT71_18006
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TraM recognition site of TraD and TraG
EggNOG OGs1J83J@118884,1MVGD@1224,1RNGF@1236,COG3505@1,COG3505@2
COG Functional cat.U
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.4354417-CDS-M-pyrifera_M_contig88016:76..8231622816789.4354417-CDS-M-pyrifera_M_contig88016:76..823Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88016 77..823 +
1692278179.5220919-CDS-M-pyrifera_M_contig88016:76..8231692278179.5220919-CDS-M-pyrifera_M_contig88016:76..823Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88016 77..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88016.20442.1prot_M-pyrifera_M_contig88016.20442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88016 77..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88016.20442.1

>prot_M-pyrifera_M_contig88016.20442.1 ID=prot_M-pyrifera_M_contig88016.20442.1|Name=mRNA_M-pyrifera_M_contig88016.20442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp
ASKISERNLAAALRGRDREAIALMRYLQAQDLYDPVLEGLVSAFKYDKTY
FDKIVSSVGPLMEKLTTGSIAALISPDYLDEQDPRPIFEWLDVIQRKGIV
YVGLDALTDTTVASAVGNAMFADLVSVAGHIYKHGVPGAEAGSVPTISLH
ADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGNRAKAGQVA
GNFNTLMMLRVKELATAEMLTDQLPRVEVVTLMSVSGVDDSSDPTSGVD
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mRNA from alignment at M-pyrifera_M_contig88016:77..823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88016.20442.1 ID=mRNA_M-pyrifera_M_contig88016.20442.1|Name=mRNA_M-pyrifera_M_contig88016.20442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig88016:77..823+ (Macrocystis pyrifera P11B4 male)
GCCAGTAAGATCAGTGAGCGCAACCTCGCCGCCGCACTGCGGGGTCGCGA TCGGGAGGCCATCGCCCTGATGCGCTACCTGCAGGCACAGGATCTGTATG ATCCGGTGCTGGAAGGCCTGGTGTCCGCCTTCAAATACGACAAGACCTAT TTTGACAAGATCGTGAGCTCCGTCGGTCCCCTGATGGAAAAGCTCACCAC CGGCTCGATCGCGGCGTTGATCTCGCCAGATTATCTGGACGAACAGGATC CGCGGCCCATCTTTGAATGGCTGGATGTTATCCAGCGCAAGGGGATTGTC TATGTCGGACTCGATGCACTGACCGACACCACCGTCGCCAGTGCGGTGGG CAATGCCATGTTCGCCGACCTGGTGTCGGTGGCGGGGCACATTTACAAGC ATGGTGTGCCCGGCGCGGAGGCGGGGAGTGTACCCACCATCTCGCTGCAC GCCGATGAGTTCAACGAGCTGATCGGGGATGAGTTCGTGCCACTGCTCAA CAAGGCGGGCGGTGCCGGGTTTCAGGTTACGGCTTATACCCAGACCTGGT CGGACGTGGAAGCGCGCATCGGCAATCGCGCCAAGGCGGGCCAGGTGGCG GGCAATTTCAATACCCTGATGATGCTGCGGGTAAAAGAGCTGGCCACCGC TGAGATGCTGACCGACCAGCTGCCGCGGGTCGAGGTGGTCACGCTGATGA GTGTGTCGGGTGTGGATGACTCCTCCGATCCCACCTCGGGCGTGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88016:77..823+

>mRNA_M-pyrifera_M_contig88016.20442.1 ID=mRNA_M-pyrifera_M_contig88016.20442.1|Name=mRNA_M-pyrifera_M_contig88016.20442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig88016:77..823+ (Macrocystis pyrifera P11B4 male)
GCCAGTAAGATCAGTGAGCGCAACCTCGCCGCCGCACTGCGGGGTCGCGA
TCGGGAGGCCATCGCCCTGATGCGCTACCTGCAGGCACAGGATCTGTATG
ATCCGGTGCTGGAAGGCCTGGTGTCCGCCTTCAAATACGACAAGACCTAT
TTTGACAAGATCGTGAGCTCCGTCGGTCCCCTGATGGAAAAGCTCACCAC
CGGCTCGATCGCGGCGTTGATCTCGCCAGATTATCTGGACGAACAGGATC
CGCGGCCCATCTTTGAATGGCTGGATGTTATCCAGCGCAAGGGGATTGTC
TATGTCGGACTCGATGCACTGACCGACACCACCGTCGCCAGTGCGGTGGG
CAATGCCATGTTCGCCGACCTGGTGTCGGTGGCGGGGCACATTTACAAGC
ATGGTGTGCCCGGCGCGGAGGCGGGGAGTGTACCCACCATCTCGCTGCAC
GCCGATGAGTTCAACGAGCTGATCGGGGATGAGTTCGTGCCACTGCTCAA
CAAGGCGGGCGGTGCCGGGTTTCAGGTTACGGCTTATACCCAGACCTGGT
CGGACGTGGAAGCGCGCATCGGCAATCGCGCCAAGGCGGGCCAGGTGGCG
GGCAATTTCAATACCCTGATGATGCTGCGGGTAAAAGAGCTGGCCACCGC
TGAGATGCTGACCGACCAGCTGCCGCGGGTCGAGGTGGTCACGCTGATGA
GTGTGTCGGGTGTGGATGACTCCTCCGATCCCACCTCGGGCGTGGATGCC
AGTAAGATCAGTGAGCGCAACCTCGCCGCCGCACTGCGGGGTCGCGATCG
GGAGGCCATCGCCCTGATGCGCTACCTGCAGGCACAGGATCTGTATGATC
CGGTGCTGGAAGGCCTGGTGTCCGCCTTCAAATACGACAAGACCTATTTT
GACAAGATCGTGAGCTCCGTCGGTCCCCTGATGGAAAAGCTCACCACCGG
CTCGATCGCGGCGTTGATCTCGCCAGATTATCTGGACGAACAGGATCCGC
GGCCCATCTTTGAATGGCTGGATGTTATCCAGCGCAAGGGGATTGTCTAT
GTCGGACTCGATGCACTGACCGACACCACCGTCGCCAGTGCGGTGGGCAA
TGCCATGTTCGCCGACCTGGTGTCGGTGGCGGGGCACATTTACAAGCATG
GTGTGCCCGGCGCGGAGGCGGGGAGTGTACCCACCATCTCGCTGCACGCC
GATGAGTTCAACGAGCTGATCGGGGATGAGTTCGTGCCACTGCTCAACAA
GGCGGGCGGTGCCGGGTTTCAGGTTACGGCTTATACCCAGACCTGGTCGG
ACGTGGAAGCGCGCATCGGCAATCGCGCCAAGGCGGGCCAGGTGGCGGGC
AATTTCAATACCCTGATGATGCTGCGGGTAAAAGAGCTGGCCACCGCTGA
GATGCTGACCGACCAGCTGCCGCGGGTCGAGGTGGTCACGCTGATGAGTG
TGTCGGGTGTGGATGACTCCTCCGATCCCACCTCGGGCGTGGAT
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