mRNA_M-pyrifera_M_contig87962.20437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87962.20437.1
Unique NamemRNA_M-pyrifera_M_contig87962.20437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A2E7KLE8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLE8_9PLAN)

HSP 1 Score: 251 bits (642), Expect = 2.460e-84
Identity = 122/136 (89.71%), Postives = 125/136 (91.91%), Query Frame = 1
Query:    1 MELILISCWFCKVLPGRLTVFRSEADCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCLRGKLRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESVQLGVREVQ 408
            MELILISCWFCKVLPGRLTVFRSEADCVEGRVGVKTEFCPLVSGILSWCV  FVPICPAFVPLWPGC   +LRT   CSSEARVKIDGDSGVVETV+ D+PVCVDVPRARARKGTGYA AGGEQGESVQL VREVQ
Sbjct:    1 MELILISCWFCKVLPGRLTVFRSEADCVEGRVGVKTEFCPLVSGILSWCVLKFVPICPAFVPLWPGCQGEQLRTGAGCSSEARVKIDGDSGVVETVVLDIPVCVDVPRARARKGTGYALAGGEQGESVQLRVREVQ 136          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A517WLD5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WLD5_9PLAN)

HSP 1 Score: 249 bits (637), Expect = 5.110e-83
Identity = 121/136 (88.97%), Postives = 124/136 (91.18%), Query Frame = 1
Query:    1 MELILISCWFCKVLPGRLTVFRSEADCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCLRGKLRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESVQLGVREVQ 408
            MELIL SCWFCKVLPGRLTV R+EADCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCL GKL+T   CS E RVKIDGDSGV ETVMFDVPVCVDVPRARARK T YASAGGEQGESVQ GVR+VQ
Sbjct:    1 MELILFSCWFCKVLPGRLTVARNEADCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCLGGKLQTGAGCSREYRVKIDGDSGVDETVMFDVPVCVDVPRARARKRTAYASAGGEQGESVQRGVRKVQ 136          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A517QET4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QET4_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 7.690e-25
Identity = 65/137 (47.45%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   25 WFCKVLPGRLTVFRSE---------ADCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCLRGK-LRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESVQLGVREV 405
            W  + L G+ TV   E          D VEGRVGVKTEF P+VSG+            P FV +WP   RG+ LRT  NCS   RVKIDGDSG VE+++  VPV  D PRARAR G  Y SAG +Q + VQ    +V
Sbjct:   68 WSIQALSGKPTVAPGELHLGVSTDCVDLVEGRVGVKTEFFPVVSGVCPGLAGILSRSVPVFVTMWPD-RRGRILRTGANCSGVKRVKIDGDSGAVESLVPCVPVHADPPRARARWGPAYDSAGVDQVQIVQRNSEDV 203          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A518A0R3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A0R3_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 4.710e-20
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   85 EGRVGVKTEFCPLVSG---ILSWCVSDFVPICPAFVPLWPGCLRGKLRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESVQLGVREVQ 408
            E RVGVKT+ CP V+G   +L+  +S FV +   FVP+WP       RT    S E  VKIDGDSGVV +V+ D+      PRARAR G  Y S    QGESVQ+GVREVQ
Sbjct:   31 ERRVGVKTDLCPFVAGFCPVLAGILSRFVLV---FVPMWPASKGETGRTDSLLSGENSVKIDGDSGVVSSVVPDMQGTEHRPRARARFGPTYDSECANQGESVQVGVREVQ 138          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A518ADW8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADW8_9PLAN)

HSP 1 Score: 84.3 bits (207), Expect = 9.970e-18
Identity = 57/136 (41.91%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   22 CWFCKVLPGRLTVFRSEADCVEGRVGVKTE-------FCPLVSGILSWCVSDFVPICPAFVPLWPGCLRGKLRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESVQLGVREVQ 408
            CW  ++L   +++ R     VEGRVGVKT+       FCP++SGILS  V  FV        +WP  L+   RT   CS    +KIDGDSG   +V+  +      PRARA+ G  Y SAG    ESVQL V E+Q
Sbjct:   34 CWM-RLLWVMVSISRELFHSVEGRVGVKTKLCPGVSSFCPVLSGILSRSVLYFVL-------MWPDQLKRTWRTGSKCSGGNLMKIDGDSGEAASVILQMQCTQHRPRARAKLGLTYGSAGAVPVESVQLEVEEIQ 161          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A518AEW6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AEW6_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-16
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   82 VEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCLRGK-LRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGT 345
            VEGR+GVKTEF P+VSG+            P FV +WP   RG+ LRT   CS    VK DGDSG VE+++  VPV  D PRARAR GT
Sbjct:   92 VEGRMGVKTEFFPVVSGVCPGLAGILSRSVPVFVTIWPD-RRGRILRTGAKCSGAKWVKFDGDSGAVESLVPCVPVHADPPRARARLGT 179          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A517Q994_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q994_9PLAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-14
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   58 VFRSEADCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWP---------GCLRGK-LRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESVQ 387
            V    ++  E  VG++T+FCP V+G+           CP FV +           G +RG+ +RT  NCSS+  VKID  SG   +++  VPV VD+PRARAR G  Y SAG +QG+ VQ
Sbjct:   20 VLTEGSNFAESFVGIRTKFCPNVAGL-----------CPVFVLIVSIFGQNLSRFGQIRGRTIRTGSNCSSKNLVKIDDVSGAFASLVRRVPVHVDLPRARARLGPTYDSAGADQGQIVQ 128          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A518FXR1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FXR1_9PLAN)

HSP 1 Score: 72.8 bits (177), Expect = 3.670e-13
Identity = 45/87 (51.72%), Postives = 51/87 (58.62%), Query Frame = 3
Query:   39 ASGPVNRFPE*G*LCGRARGGQDRILSSCVR-------DFVLVCLGFCPDLSGVCPAVAWLPKGE-IANRCELFQ*SQGENRW*FRC 275
            ASG VNR       C RARGGQDRILS CVR       +FV +C GFC D++G        P+GE IAN CE+FQ   GE R  FRC
Sbjct:  126 ASGDVNRLCR---SCRRARGGQDRILSCCVRSLSWFGRNFVSICPGFCHDVAG--------PEGENIANGCEMFQWIPGEIRRRFRC 201          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A517WEE5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WEE5_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 6.730e-13
Identity = 50/112 (44.64%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   76 DCVEGRVGVKTEFCPLVSGILSWCVSDFVPICPAFVPLWPGCLRGKLRTAVNCSSEARVKIDGDSGVVETVMFDVPVC-VDVPRARARKGTGYASAGGEQGESVQLGVREVQ 408
            D  E R GVKTEFCP V+G     VS  +     F+     C +    T   C  E  VK DG SG    ++  V  C   V RARAR GTGY  AG +QGE +QL VREVQ
Sbjct:   13 DFAERRRGVKTEFCPNVAGFCPG-VSQNLSWSGRFLSCCALCQKWIQVTGAGCFREQEVKTDGFSGGCGALVRFVSWCRFPVSRARARLGTGYGEAGADQGEFIQLLVREVQ 123          
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Match: A0A518ADE9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADE9_9PLAN)

HSP 1 Score: 69.7 bits (169), Expect = 2.760e-12
Identity = 53/127 (41.73%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   25 WF--CKVLPGRLTVFR-SEADCVEGRVGVKTEFCPLVSG---ILSWCVSDFVPICPAFVPLWPGCLRGK-LRTAVNCSSEARVKIDGDSGVVETVMFDVPVCVDVPRARARKGTGYASAGGEQGESV 384
            WF  C+    R T     E + VEGRVGVKT FCP V+G   +    VS F PI   F        RG+  RT   CS   RVKIDG SG V +++  VPV  + PRARA  G  Y     +Q + V
Sbjct:   24 WFHHCRASRQRHTSMSIDERNSVEGRVGVKTNFCPDVAGLCPVFVLIVSIFGPILSRF-----DLTRGRTFRTGSKCSGGKRVKIDGISGAVASLVRCVPVLANPPRARATFGAEYEWGAADQVQCV 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87962.20437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2E7KLE8_9PLAN2.460e-8489.71Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WLD5_9PLAN5.110e-8388.97Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517QET4_9PLAN7.690e-2547.45Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518A0R3_9PLAN4.710e-2051.35Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518ADW8_9PLAN9.970e-1841.91Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518AEW6_9PLAN1.790e-1652.81Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517Q994_9PLAN1.110e-1440.83Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518FXR1_9PLAN3.670e-1351.72Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517WEE5_9PLAN6.730e-1344.64Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518ADE9_9PLAN2.760e-1241.73Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87962contigM-pyrifera_M_contig87962:353..760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.2579653-CDS-M-pyrifera_M_contig87962:352..7601622816789.2579653-CDS-M-pyrifera_M_contig87962:352..760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87962 353..760 -
1692278179.4330754-CDS-M-pyrifera_M_contig87962:352..7601692278179.4330754-CDS-M-pyrifera_M_contig87962:352..760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87962 353..760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87962.20437.1prot_M-pyrifera_M_contig87962.20437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87962 353..760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87962.20437.1

>prot_M-pyrifera_M_contig87962.20437.1 ID=prot_M-pyrifera_M_contig87962.20437.1|Name=mRNA_M-pyrifera_M_contig87962.20437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MELILISCWFCKVLPGRLTVFRSEADCVEGRVGVKTEFCPLVSGILSWCV
SDFVPICPAFVPLWPGCLRGKLRTAVNCSSEARVKIDGDSGVVETVMFDV
PVCVDVPRARARKGTGYASAGGEQGESVQLGVREVQ
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mRNA from alignment at M-pyrifera_M_contig87962:353..760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87962.20437.1 ID=mRNA_M-pyrifera_M_contig87962.20437.1|Name=mRNA_M-pyrifera_M_contig87962.20437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig87962:353..760- (Macrocystis pyrifera P11B4 male)
ATGGAACTGATCCTTATCTCTTGCTGGTTTTGTAAAGTGCTTCCGGGCCG GTTAACCGTTTTCCGGAGTGAGGCTGATTGTGTGGAAGGGCGCGTGGGGG TCAAGACAGAATTTTGTCCTCTTGTGTCCGGGATTTTGTCCTGGTGTGTC TCGGATTTTGTCCCGATCTGTCCGGCGTTTGTCCCGCTGTGGCCTGGCTG CCTAAGGGGGAAATTGCGAACCGCTGTGAATTGTTCCAGTGAAGCCAGGG TGAAAATCGATGGTGATTCAGGTGTTGTTGAGACAGTGATGTTTGATGTT CCCGTATGTGTTGACGTGCCTCGCGCGCGAGCCAGAAAGGGAACAGGATA CGCTTCGGCAGGTGGGGAACAAGGGGAGTCTGTTCAGCTGGGTGTGCGGG AAGTTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87962:353..760-

>mRNA_M-pyrifera_M_contig87962.20437.1 ID=mRNA_M-pyrifera_M_contig87962.20437.1|Name=mRNA_M-pyrifera_M_contig87962.20437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig87962:353..760- (Macrocystis pyrifera P11B4 male)
ATGGAACTGATCCTTATCTCTTGCTGGTTTTGTAAAGTGCTTCCGGGCCG
GTTAACCGTTTTCCGGAGTGAGGCTGATTGTGTGGAAGGGCGCGTGGGGG
TCAAGACAGAATTTTGTCCTCTTGTGTCCGGGATTTTGTCCTGGTGTGTC
TCGGATTTTGTCCCGATCTGTCCGGCGTTTGTCCCGCTGTGGCCTGGCTG
CCTAAGGGGGAAATTGCGAACCGCTGTGAATTGTTCCAGTGAAGCCAGGG
TGAAAATCGATGGTGATTCAGGTGTTGTTGAGACAGTGATGTTTGATGTT
CCCGTATGTGTTGACGTGCCTCGCGCGCGAGCCAGAAAGGGAACAGGATA
CGCTTCGGCAGGTGGGGAACAAGGGGAGTCTGTTCAGCTGGGTGTGCGGG
AAGTTCAGATGGAACTGATCCTTATCTCTTGCTGGTTTTGTAAAGTGCTT
CCGGGCCGGTTAACCGTTTTCCGGAGTGAGGCTGATTGTGTGGAAGGGCG
CGTGGGGGTCAAGACAGAATTTTGTCCTCTTGTGTCCGGGATTTTGTCCT
GGTGTGTCTCGGATTTTGTCCCGATCTGTCCGGCGTTTGTCCCGCTGTGG
CCTGGCTGCCTAAGGGGGAAATTGCGAACCGCTGTGAATTGTTCCAGTGA
AGCCAGGGTGAAAATCGATGGTGATTCAGGTGTTGTTGAGACAGTGATGT
TTGATGTTCCCGTATGTGTTGACGTGCCTCGCGCGCGAGCCAGAAAGGGA
ACAGGATACGCTTCGGCAGGTGGGGAACAAGGGGAGTCTGTTCAGCTGGG
TGTGCGGGAAGTTCAG
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