mRNA_M-pyrifera_M_contig87959.20436.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87959.20436.1
Unique NamemRNA_M-pyrifera_M_contig87959.20436.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A812KKU6_9DINO (NFD4 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812KKU6_9DINO)

HSP 1 Score: 122 bits (307), Expect = 6.130e-28
Identity = 101/291 (34.71%), Postives = 147/291 (50.52%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPG----VGTAIPVIILVACTLLLLLPI-PSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDNS------------GKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGWL 822
            GVLKSFFGLSA+I AV ++  F    D  ++FLLF++V VP++ LL  +  +L    +   +   G  RM   Y +V AV+L   + ++L+    ++ G        I +++  AC   L LPI P  RD       + P       +  +L   ++    P G   SA + DTI     A +    A+G  N+            G    E+   ++FWL+   +  GTGSGL LINNISQL+ A+    G      Y+++L V N +GR  FGAASD F+ARL+RPGWL
Sbjct:  197 GVLKSFFGLSATIFAVSYDSLF---PDDPSSFLLFMAVVVPSLLLLGGLCQRLAEERDAVRLSPAGTLRMFWGYLVVVAVALFASVTTVLIKTGDVEAGNAGWFAGLIGIMVGFAC---LALPIFPCHRDSSAAREGYDPVDHADGGSKEALIAPEHGAGLPVGG-GSAAVSDTIR----AAHLSAGAAGALNASLGGDRAEVVTDGAGLCESVASIDFWLIVFLLFGGTGSGLTLINNISQLAKAI----GAGTPAVYVAMLGVGNAFGRMAFGAASDAFRARLTRPGWL 472          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A7S1CLB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLB7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.420e-17
Identity = 81/287 (28.22%), Postives = 132/287 (45.99%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVI-------ILVACTLLLLL------PIPSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDNSGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGWL 822
            G+LKS FGLSA+I A  +  FF    +    FLLFL++++  + ++  +F   VP +E   +G  G RR   A +++  +++ +  V++L +  ++  G  TA  +        +L+A  LL +L      P+    D +EP                                  A L+D        Y    D         S  ++  D NF+L+F+AV+CGTG+GL +INN+ Q+  +L G  G+     ++++LSV NC GR   G  SD +   + RP WL
Sbjct:  143 GLLKSLFGLSAAIAAQFYLSFFKPDAE---PFLLFLAIYIAGLGVVGTLFVSEVPGEEATPLGKPGMRRAQFATTVIGVLAVFLATVAVLQSRWILD-GAETASQLAASKVFSYVLIALVLLNMLVAVRRCPLWGRSDKEEPE--------------------------------EAYLLD--------YRSSSDGGPSSTIHVSFGQSLTDPNFYLIFLAVMCGTGAGLMVINNLGQMVESLGGGKGS--QDVFVTLLSVFNCGGRVLAGFLSDKYSRTVIRPLWL 383          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A5C7H0P9_9ROSI (MFS domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H0P9_9ROSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.830e-16
Identity = 88/285 (30.88%), Postives = 145/285 (50.88%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLPIP------SLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPA------DPRGSDASALLMDTIEDPDDAYYPLEDASGIDNSGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIF--KARLSRP 813
            G+++ + GLS +II  V++  F G+     N+LLFLSV+  +++LL + F ++   D   E      ++ + A+S VAA+++V  L+ L++ E++   G    I   I     LLLLL  P      + R+D +  +  Q      S  G S+  ++ +P       D   SD +  +  T+   D     +E+         +  +A    NFWLLFIA++CG GSG+ +INNISQ+  +L     ++   + +S+LS+ N  GR G G  SDIF  + R +RP
Sbjct:  151 GLMEGYLGLSGAIIIRVYDALFKGNPR---NYLLFLSVYPTSVSLLLMYFVRI--HDTNSE----DDKKHLNAFS-VAALTMVAYLMILIILENIFTLGTWERIVTFIF----LLLLLASPLGIAFRAQREDSKRLILSQTF----STEGDSIVYINPEPIESMENHDQLPSDDARQVKTTL---DQNIIQIEE-------NMNLLQAICTGNFWLLFIAMICGLGSGMAMINNISQVGESLGYT--SIRINSLVSLLSIWNFLGRLGAGYVSDIFLQRKRCARP 405          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A5C7H299_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H299_9ROSI)

HSP 1 Score: 88.2 bits (217), Expect = 6.340e-16
Identity = 85/281 (30.25%), Postives = 144/281 (51.25%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLP----IPSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDN----SGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKAR--LSRP 813
            G+++ + GLS +I+  V++  F G+     N+LLFL+VF  +++LL + F ++   D   E      ++ + A+S VAA+ +V  L+ L++ E++    +G++  ++  +   LLL  P    I + R+D E  L+ Q      +F+      + Y P     S AS    D +   DD+   ++     +N       +  +     NFWLLFIA++CG GSG+  INNISQ+  +L     ++   + +S+LS+ N  GR G G  SDIF  R   +RP
Sbjct:  152 GLMEGYLGLSGAILIQVYDALFEGNPS---NYLLFLAVFPTSVSLLLMYFVRI--HDANSE----DDKKHLNAFS-VAALIMVAYLMILIILENIFT--LGSSERIVTFIFLMLLLAFPLGIAIRAQREDAERLLFSQ------TFSTDERNSLVYNPE----SIASMAYHDQLPG-DDSCQSVKATLNENNIQIEENMNLQQVICTGNFWLLFIAMICGLGSGIATINNISQVGESLGYT--SIEINSLVSLLSIWNFLGRLGAGYVSDIFLQRRGCARP 407          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A218Y0Y0_PUNGR (protein NUCLEAR FUSION DEFECTIVE 4-like n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218Y0Y0_PUNGR)

HSP 1 Score: 82.8 bits (203), Expect = 3.070e-14
Identity = 86/276 (31.16%), Postives = 138/276 (50.00%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLPIPSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASG-IDNSGK--SAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGW 819
            G++K F GLS +++  V+   F        NF+L L++F  A++LL ++F ++      Y+    G ++ + ++S VA +++   L+ L++ E+V+   V   I    +  C LLLL+  P LR     +   Q   +   F   + P +    ++P          DT E P  + YP   ++  I N+ +  +  +A    NFWLLFIA++CG GSGL  INNISQ+  +L      V  +  +S+LS+ N  GR G G  SDI    L R GW
Sbjct:  153 GIMKGFLGLSGAVLIQVYYTLFKNEPS---NFILMLALFPTAVSLLLMLFVRI------YDTNARGDKKHLNSFSAVA-LTIAAYLMVLIILENVLTLAVWFRI----ITFCVLLLLIFWP-LR--VAVAAMRQERIESDRFLLETNPLLSSSRSEPG--------KDTEEAP--SQYPASSSNAAIQNTREDMNIIQAMCTGNFWLLFIAMVCGLGSGLATINNISQIGESLGYT--TVEISTLVSLLSIWNFLGRFGAGFISDIL---LYRKGW 396          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A6I9TR50_SESIN (protein NUCLEAR FUSION DEFECTIVE 4-like n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TR50_SESIN)

HSP 1 Score: 82.8 bits (203), Expect = 3.080e-14
Identity = 83/293 (28.33%), Postives = 133/293 (45.39%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDET---YEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPV---IILVACTLLLL--------------LPIPSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDNSGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGW 819
            G++K F GLSA+II  V++ FFAG       FLL L+V  P + LL + F ++    +T   Y+      +R + A+S ++ +    L+  + +   ++ P    A+ +   ++L+A  L +               L  P +++D E      P   H + +   + Q   Q  +    DA                  ED + +        +A   +NFWLLF+A+LCG GSGL  INNISQ+  +L G      +T  +S+ S+ N  GR G G  SDIF   + + GW
Sbjct:  150 GIMKGFLGLSAAIIIQVYQTFFAGKP---ATFLLMLAVVPPLLTLLLMFFVRIQHTTQTQSSYQ-----DKRYLNAFSFISVIVAAYLMFLIFLNNSIVLPHWARALTLALLLLLIASPLYIAIKAHQHHLQTMQSPLKTPLIKEDLESIKPENPTIDHVNVSANGVQQQQQQHKETTSEDAG-----------------EDLNLV--------QAMRTLNFWLLFMAMLCGLGSGLATINNISQIGESL-GYTARERST-MVSLWSIWNFLGRFGAGYVSDIF---MHKKGW 404          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A2R6QGV9_ACTCC (Protein NUCLEAR FUSION DEFECTIVE like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6QGV9_ACTCC)

HSP 1 Score: 82.0 bits (201), Expect = 5.560e-14
Identity = 83/278 (29.86%), Postives = 134/278 (48.20%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLPIP---SLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDNSGK--SAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGW 819
            G++K   GLS +++  V++ F  G       F+L L+V   +++LL +   ++ P + +    +G  ++ +  +S VA +    LL+ L++ E+++   +   I    L    LLLLL  P   ++R  +E S   +  PQ PS     L +          S+  +   D+IE     Y+      G    GK  +  ++   VNFWLLFIA+ CG GSGL  +NNISQ+  +LE     V  +  +S+ S+ N  GR G G  SD+F   L   GW
Sbjct:  149 GIMKGILGLSGAVLIQVYQTFLKGRPS---TFILMLAVLPTSVSLLLMCLVRIYPTNNS----VGDDKKYLDGFSSVALIVAAYLLI-LIILENLLTFPLWAHI----LTFVVLLLLLTSPLTIAIRAQEEHS---RRLPQLPSNERSQLIE----------SEKFSATEDSIE-----YHEETSDDGRLQLGKEMNLLQSIRTVNFWLLFIAMFCGMGSGLATVNNISQIGESLEYT--TVEISTLVSLWSIWNFLGRFGAGYVSDVF---LHTRGW 391          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A0K9RWY7_SPIOL (Nodulin-like domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RWY7_SPIOL)

HSP 1 Score: 82.0 bits (201), Expect = 5.570e-14
Identity = 83/285 (29.12%), Postives = 127/285 (44.56%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLPIPSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDN------------SGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGW 819
            G++K F GLS +I+  V++ FF    ++ + F+L L+ F+P +   +++F   +    T     G +++ +  +S+VA V    L+  ++V    + P     +    LV   +LL  P+                    S   VS    D QP     SD   LL  T  +  + +   +D  G D                + WEA   +NFWLLFIA+ CG GSGL  INN+SQ+  +L G D  V     +S+ S+ N  GR G G  SDI    L + GW
Sbjct:  152 GIMKGFLGLSGAILIQVYQAFF---KESPSTFILLLA-FLPTLVSFSLMFLVRICPGST-----GDEKKYLNGFSIVALVLAAYLMFIIIVENIFVLPKWAHLVT---LVGLVILLSSPLKV------------------SAEAVSKENNDVQP-----SDWDTLLYGTDPNEPEKFLGEKDGGGYDELPGTSHNVTPRTENMNLWEAMKSLNFWLLFIAMSCGMGSGLATINNMSQIGQSL-GYD-TVKINTLVSLWSIWNFLGRFGGGYISDIL---LRQKGW 396          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A200QNH4_9MAGN (Nodulin-like n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QNH4_9MAGN)

HSP 1 Score: 81.6 bits (200), Expect = 7.440e-14
Identity = 86/285 (30.18%), Postives = 135/285 (47.37%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLPI-----PSLRDDQE---PSLYHQPAP---QHPSFAGVSLPQVDYQPADPRGSD-ASALLMDTIEDPDDAYYPLEDASGIDNSGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGW 819
            G++K F GLS +I+  V++  F    D  ++F+L L++    + LL + F K+ P   T E      ++ +  +S++A +    L+V L+++E+V+  G+ T I  I L+   L L  P+       L+D Q+   PS  H   P    H     V     D+ P   R +D   + L+ T  D      PLE    +        EA   ++FWLLF+A+ CG GSG+  +NNI Q+  +L     +V     +S+ S+ N  GR G G  SD F   L   GW
Sbjct:  158 GIIKGFLGLSGAILIQVYQTIF---QDKPSSFILMLALLPTIVPLLLMSFVKIKPTRGTDE------KKHLNGFSVIALLIAAYLMV-LIISENVVTFGLSTRI--ITLIVLLLGLASPVGIAIRAHLKDSQKFSPPSSSHAETPLLNDHEDQVEVLEKINDHPPLLYRNADDQESSLISTQNDEHKMKNPLEPELNL-------LEAMQTIDFWLLFLAMACGLGSGMATVNNIGQIGGSLGYT--SVETRTLVSLWSIWNFLGRFGAGFVSDYF---LHLRGW 418          
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Match: A0A1S4CR50_TOBAC (protein NUCLEAR FUSION DEFECTIVE 4-like n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CR50_TOBAC)

HSP 1 Score: 81.3 bits (199), Expect = 8.860e-14
Identity = 78/273 (28.57%), Postives = 122/273 (44.69%), Query Frame = 1
Query:    1 GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVFTKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGVGTAIPVIILVACTLLLLLPIPSLRDDQEPSLYHQPAPQHPSFAGVSLPQVDYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDNSGKSAWEAALDVNFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVANCWGRAGFGAASDIFKARLSRPGW 819
            G++K F GLS +I+  V++    G+  +    L+ +   +P I  L ++F   V +  +       + + +  + L++ V    LL+  ++    + P   T I  ++L+A   LL  PI      Q   L   P    PS    S   +D    D         L D  E P ++      +    N  K+ W+A   V+FW LF+A++CG GSGL  INNISQ+  +L      +  +  +S  S+ N  GR G G  SDIF   L R GW
Sbjct:  154 GIMKGFLGLSGAILIQVYQTLSNGNPSS----LILMLALLPTIVTLVLMFLVRVHQTPSRN-----EEKHLHGFLLLSLVIAAYLLLLRILENVFVFPQWATIITFLVLLA---LLCSPISVAFKAQRVDLERLP----PSITSSSSLLIDEPELDSPNKLTVGYLRDYDEVPTESVQRKASSILQPNEQKNLWQAMCTVDFWFLFVAMICGMGSGLATINNISQIGESLGYT--TLARSTLVSFWSIWNFLGRLGAGYVSDIF---LLRRGW 405          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87959.20436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812KKU6_9DINO6.130e-2834.71NFD4 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A7S1CLB7_9STRA5.420e-1728.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5C7H0P9_9ROSI1.830e-1630.88MFS domain-containing protein n=1 Tax=Acer yangbie... [more]
A0A5C7H299_9ROSI6.340e-1630.25Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A218Y0Y0_PUNGR3.070e-1431.16protein NUCLEAR FUSION DEFECTIVE 4-like n=1 Tax=Pu... [more]
A0A6I9TR50_SESIN3.080e-1428.33protein NUCLEAR FUSION DEFECTIVE 4-like n=1 Tax=Se... [more]
A0A2R6QGV9_ACTCC5.560e-1429.86Protein NUCLEAR FUSION DEFECTIVE like n=2 Tax=Acti... [more]
A0A0K9RWY7_SPIOL5.570e-1429.12Nodulin-like domain-containing protein n=1 Tax=Spi... [more]
A0A200QNH4_9MAGN7.440e-1430.18Nodulin-like n=1 Tax=Macleaya cordata TaxID=56857 ... [more]
A0A1S4CR50_TOBAC8.860e-1428.57protein NUCLEAR FUSION DEFECTIVE 4-like n=2 Tax=Ni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87959contigM-pyrifera_M_contig87959:3..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog4113.PGSC0003DMT400044107
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Nodulin-like
EggNOG OGs28I3Q@1,2QQE4@2759,37KT6@33090,3G7I4@35493,44GWH@71274
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.2187424-CDS-M-pyrifera_M_contig87959:2..8241622816789.2187424-CDS-M-pyrifera_M_contig87959:2..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87959 3..824 -
1692278179.419214-CDS-M-pyrifera_M_contig87959:2..8241692278179.419214-CDS-M-pyrifera_M_contig87959:2..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87959 3..824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87959.20436.1prot_M-pyrifera_M_contig87959.20436.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87959 3..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87959.20436.1

>prot_M-pyrifera_M_contig87959.20436.1 ID=prot_M-pyrifera_M_contig87959.20436.1|Name=mRNA_M-pyrifera_M_contig87959.20436.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
GVLKSFFGLSASIIAVVFEGFFAGHDDAATNFLLFLSVFVPAIALLAVVF
TKLVPRDETYEVGIGGQRRMILAYSLVAAVSLVVLLVSLLVAEDVIKPGV
GTAIPVIILVACTLLLLLPIPSLRDDQEPSLYHQPAPQHPSFAGVSLPQV
DYQPADPRGSDASALLMDTIEDPDDAYYPLEDASGIDNSGKSAWEAALDV
NFWLLFIAVLCGTGSGLCLINNISQLSLALEGPDGNVVATAYISILSVAN
CWGRAGFGAASDIFKARLSRPGWL
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mRNA from alignment at M-pyrifera_M_contig87959:3..824-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87959.20436.1 ID=mRNA_M-pyrifera_M_contig87959.20436.1|Name=mRNA_M-pyrifera_M_contig87959.20436.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig87959:3..824- (Macrocystis pyrifera P11B4 male)
GGGGTGTTGAAGAGTTTCTTTGGGTTGAGTGCGTCTATCATTGCTGTAGT GTTTGAGGGATTCTTTGCTGGTCACGACGATGCGGCAACAAACTTTTTGC TCTTCTTGAGTGTGTTTGTTCCAGCTATTGCGTTACTTGCAGTTGTATTC ACCAAGCTCGTACCTCGTGATGAGACATACGAGGTTGGTATTGGTGGACA ACGTCGAATGATTCTAGCATATAGTCTTGTTGCTGCTGTGAGTCTGGTTG TGCTCCTTGTGTCGTTGTTAGTTGCAGAAGACGTCATTAAACCAGGCGTG GGAACAGCAATTCCAGTCATTATTCTTGTAGCATGTACTCTTCTCCTCCT TCTCCCTATCCCAAGCCTTCGTGATGATCAAGAACCTTCTTTGTATCATC AACCTGCACCACAGCATCCAAGCTTTGCTGGTGTGTCTTTGCCTCAAGTG GATTACCAACCAGCTGACCCAAGAGGCTCAGATGCATCTGCACTACTCAT GGATACAATTGAGGACCCAGATGACGCCTATTATCCCTTGGAAGATGCAT CTGGCATTGATAATAGCGGCAAGAGTGCATGGGAAGCAGCATTGGATGTA AACTTTTGGCTCCTCTTCATCGCAGTCCTTTGTGGAACAGGATCAGGCCT TTGTCTCATCAACAACATCTCCCAATTGTCATTAGCATTGGAAGGACCGG ATGGAAATGTTGTTGCCACCGCATACATCAGCATTCTTTCAGTAGCAAAT TGCTGGGGACGCGCTGGATTCGGTGCAGCTTCTGACATTTTCAAAGCACG TCTTTCTCGTCCAGGTTGGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87959:3..824-

>mRNA_M-pyrifera_M_contig87959.20436.1 ID=mRNA_M-pyrifera_M_contig87959.20436.1|Name=mRNA_M-pyrifera_M_contig87959.20436.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig87959:3..824- (Macrocystis pyrifera P11B4 male)
GGGGTGTTGAAGAGTTTCTTTGGGTTGAGTGCGTCTATCATTGCTGTAGT
GTTTGAGGGATTCTTTGCTGGTCACGACGATGCGGCAACAAACTTTTTGC
TCTTCTTGAGTGTGTTTGTTCCAGCTATTGCGTTACTTGCAGTTGTATTC
ACCAAGCTCGTACCTCGTGATGAGACATACGAGGTTGGTATTGGTGGACA
ACGTCGAATGATTCTAGCATATAGTCTTGTTGCTGCTGTGAGTCTGGTTG
TGCTCCTTGTGTCGTTGTTAGTTGCAGAAGACGTCATTAAACCAGGCGTG
GGAACAGCAATTCCAGTCATTATTCTTGTAGCATGTACTCTTCTCCTCCT
TCTCCCTATCCCAAGCCTTCGTGATGATCAAGAACCTTCTTTGTATCATC
AACCTGCACCACAGCATCCAAGCTTTGCTGGTGTGTCTTTGCCTCAAGTG
GATTACCAACCAGCTGACCCAAGAGGCTCAGATGCATCTGCACTACTCAT
GGATACAATTGAGGACCCAGATGACGCCTATTATCCCTTGGAAGATGCAT
CTGGCATTGATAATAGCGGCAAGAGTGCATGGGAAGCAGCATTGGATGTA
AACTTTTGGCTCCTCTTCATCGCAGTCCTTTGTGGAACAGGATCAGGCCT
TTGTCTCATCAACAACATCTCCCAATTGTCATTAGCATTGGAAGGACCGG
ATGGAAATGTTGTTGCCACCGCATACATCAGCATTCTTTCAGTAGCAAAT
TGCTGGGGACGCGCTGGATTCGGTGCAGCTTCTGACATTTTCAAAGCACG
TCTTTCTCGTCCAGGTTGGCTTGGGGTGTTGAAGAGTTTCTTTGGGTTGA
GTGCGTCTATCATTGCTGTAGTGTTTGAGGGATTCTTTGCTGGTCACGAC
GATGCGGCAACAAACTTTTTGCTCTTCTTGAGTGTGTTTGTTCCAGCTAT
TGCGTTACTTGCAGTTGTATTCACCAAGCTCGTACCTCGTGATGAGACAT
ACGAGGTTGGTATTGGTGGACAACGTCGAATGATTCTAGCATATAGTCTT
GTTGCTGCTGTGAGTCTGGTTGTGCTCCTTGTGTCGTTGTTAGTTGCAGA
AGACGTCATTAAACCAGGCGTGGGAACAGCAATTCCAGTCATTATTCTTG
TAGCATGTACTCTTCTCCTCCTTCTCCCTATCCCAAGCCTTCGTGATGAT
CAAGAACCTTCTTTGTATCATCAACCTGCACCACAGCATCCAAGCTTTGC
TGGTGTGTCTTTGCCTCAAGTGGATTACCAACCAGCTGACCCAAGAGGCT
CAGATGCATCTGCACTACTCATGGATACAATTGAGGACCCAGATGACGCC
TATTATCCCTTGGAAGATGCATCTGGCATTGATAATAGCGGCAAGAGTGC
ATGGGAAGCAGCATTGGATGTAAACTTTTGGCTCCTCTTCATCGCAGTCC
TTTGTGGAACAGGATCAGGCCTTTGTCTCATCAACAACATCTCCCAATTG
TCATTAGCATTGGAAGGACCGGATGGAAATGTTGTTGCCACCGCATACAT
CAGCATTCTTTCAGTAGCAAATTGCTGGGGACGCGCTGGATTCGGTGCAG
CTTCTGACATTTTCAAAGCACGTCTTTCTCGTCCAGGTTGGCTT
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