mRNA_M-pyrifera_M_contig879.20430.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig879.20430.1
Unique NamemRNA_M-pyrifera_M_contig879.20430.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig879.20430.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 2.080e-87
Identity = 148/220 (67.27%), Postives = 177/220 (80.45%), Query Frame = 1 
Query:  157 VHLSRMGMEEEGKLLGSISLLLGSVMVVGALCGAAGVSFSTDDGGRLPLLAAVYLSAPLSLADLVAAITFAAERSKVLRMDLEHEEHRGMRPAPGPXXXXXXXXENDPESRADSFRRLYDAFLFLALAFTVLEALMLRLGRRRLAAAAMRRKGRVGEGGFLATGA-LESLLDEEDLRQTGWEDWAGESVQQQNLVMEQRYEQLRRKNSERNEGLLEQTRG 813
            +HL+R+G+E EGKLLGSI+L+LGS+M +GALCGAAG  FS D+GGRLPLL AVYLSAPLSLADL+A +TF  +RS+VLR+DLEHE+ RG RP PGP         +DPES+ADSFRRLYDAFL +ALAF+VLEALM RLG RR+AA A R +   G G  L  G+ +ESLLDEED+R+ GWEDW G++VQQ  L+MEQRYEQLRR N E+NEGLLE TRG
Sbjct:    1 MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLIAGVTFIVKRSEVLRLDLEHEQSRGGRPHPGPPSPVPGG--DDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGESLVYGSGMESLLDEEDVRRNGWEDWRGDTVQQ-GLMMEQRYEQLRRSNLEKNEGLLEHTRG 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig879.20430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKX3_ECTSI2.080e-8767.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig879contigM-pyrifera_M_contig879:18669..23920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005900.1
Exons4
Model size834
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig879.20430.1prot_M-pyrifera_M_contig879.20430.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig879 18669..23920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.8796985-CDS-M-pyrifera_M_contig879:18668..189381622816788.8796985-CDS-M-pyrifera_M_contig879:18668..18938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 18669..18938 +
1692278179.207726-CDS-M-pyrifera_M_contig879:18668..189381692278179.207726-CDS-M-pyrifera_M_contig879:18668..18938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 18669..18938 +
1622816788.8903186-CDS-M-pyrifera_M_contig879:21440..215541622816788.8903186-CDS-M-pyrifera_M_contig879:21440..21554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 21441..21554 +
1692278179.2209382-CDS-M-pyrifera_M_contig879:21440..215541692278179.2209382-CDS-M-pyrifera_M_contig879:21440..21554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 21441..21554 +
1622816788.900052-CDS-M-pyrifera_M_contig879:22885..232271622816788.900052-CDS-M-pyrifera_M_contig879:22885..23227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 22886..23227 +
1692278179.2315028-CDS-M-pyrifera_M_contig879:22885..232271692278179.2315028-CDS-M-pyrifera_M_contig879:22885..23227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 22886..23227 +
1622816788.9098394-CDS-M-pyrifera_M_contig879:23812..239201622816788.9098394-CDS-M-pyrifera_M_contig879:23812..23920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 23813..23920 +
1692278179.2418108-CDS-M-pyrifera_M_contig879:23812..239201692278179.2418108-CDS-M-pyrifera_M_contig879:23812..23920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 23813..23920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig879.20430.1

>prot_M-pyrifera_M_contig879.20430.1 ID=prot_M-pyrifera_M_contig879.20430.1|Name=mRNA_M-pyrifera_M_contig879.20430.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=278bp
MRHNNALRRSWAKRVRQDNSFRADAPSPTFVPLTLFRGLGGVAFLCFGEL
FWVHLSRMGMEEEGKLLGSISLLLGSVMVVGALCGAAGVSFSTDDGGRLP
LLAAVYLSAPLSLADLVAAITFAAERSKVLRMDLEHEEHRGMRPAPGPPG
PDPDPEENDPESRADSFRRLYDAFLFLALAFTVLEALMLRLGRRRLAAAA
MRRKGRVGEGGFLATGALESLLDEEDLRQTGWEDWAGESVQQQNLVMEQR
YEQLRRKNSERNEGLLEQTRGGDKNRL*
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mRNA from alignment at M-pyrifera_M_contig879:18669..23920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig879.20430.1 ID=mRNA_M-pyrifera_M_contig879.20430.1|Name=mRNA_M-pyrifera_M_contig879.20430.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5252bp|location=Sequence derived from alignment at M-pyrifera_M_contig879:18669..23920+ (Macrocystis pyrifera P11B4 male)
ATGCGCCACAACAATGCGCTCCGGCGCTCGTGGGCGAAACGAGTTCGCCA
AGACAATAGTTTCCGTGCGGACGCCCCTTCTCCGACGTTTGTTCCTCTGA
CCCTCTTTCGCGGGCTAGGCGGAGTAGCCTTCTTATGCTTCGGCGAGCTC
TTCTGGGTACATCTCTCCCGCATGGGGATGGAAGAAGAGGGGAAGCTGTT
GGGCTCGATATCGCTGCTCTTGGGGTCGGTGATGGTGGTTGGGGCTCTGT
GTGGAGCTGCGGGGGTGTCGGTGAGATGAATGGACTGGTTTACGAGTAAT
TTTACCTGTGGTACACTATTAATAGTAAATGGCCCATGGTCTGTGGTGCT
TTGCTGGCGGGGTTGCGCGGAGCAGTGGACCATCGACAACGAGCTTGGGT
ATGATGTGCTTCCAAAAAAAACCGTGGGGTGTGGCCTCGTGGTCGACTAG
CCTAGTCACACAAGCATACTGGCGGGACACGTACGGCGCAAACTATATAG
CTGTCAGTACGAGTACAACTACGTACTTTGTAAGTAGTACGTTTTCAAAA
TTGCAAAATAATTGTCGAACAAAGCAGTACTATTAATAGTTACCATTACC
TGCCTGACGACAGGGTTCTTCCCGAAATCCCAGGGGTCTGTCTTCGTGGG
TTGGCCCGCGACCCGCAGACCGGACCACCTGTGGAGAATACATCACGGGC
CAAGCCGGACAGAGTGTGAAAACCTGAATATCTCACTGTCCGGGCCGTAT
TTGGCAAACTGTAAATCGCACGGGCCGGGCAGGCCAGGGGGGCGTCATGT
GCACATCTCACGGGCCGGGCCGAAGCCCGTGATTTGAGAATCTCGCAGAC
GGGACACAGGTTTATCACGGGGTAGGCTGACATTACCCGCGAGTATTGCG
ACCCGTTTCGTGTTTGTCGACCTGCGGGTCGACCCGTGAGAAGCCGCCAA
AAAAAAATGGCTTTACCTGTGCCGGTATACCATACTGGTAGCTGGTACTT
CGTTCCAGTTGTATTGAATAAAGCGCATGCAGAAATTTCTTGTTACTTTT
GCCATGCTAACAAGTCCCTACTGCTGTAGATCCCAACTAACGGTTGTCAA
CTCCTCGTCGGAGAAGTGAACGTTGTATTAATAACATGTAACACGTGTGA
TAAGAAATACCTGGTACGATGTTAAAGGCTGGTTTTCTCGACATGGGCGA
GAGTGTAGACGCCGAGCGACGCGTGTAGGAAAATATATCGACGAGATATT
TCCAAAGATACCGTCTTTGTTCGGAGTTTCCCCCTTGTTTCGGAGAAAAT
CGTCTCGGAAATTCGTCACAGGGGACGTCTTAGGTGTATTATCCTATCAC
CCGTGTGATGGTGTTACTCGTACACGGCATCTGCTTCTCAAGGTCCAGCA
ACTTGATCGTGTGCGGGAACCCCTTGCTCTGGGCATCCTCTGCCACCATC
ACCTCGTGCCGGTTTCTAAAATGTGTCGGTTGTTTTGAAATACATATACG
ATTTTTGTTCTGTTTATTTTACTCTTTCGATTTGTCTTCTTTTTTTGTTT
TTTCTTTGTTTTCTTTCGTTTCTCTATTTCATGGAATGTGTATGTCGTGC
CTGTCGTACTGTCGTCTCCAGTATGATGACATGGCATTGCATTGTCCACT
GTGCCTACTGCATACGTGGCAACGTAGTATTTCTGTGGCGTAGTTTTGTG
ACCACATAACTTGTATCTTCCTAGGATTGAAGAATCGGCACGGACACTGG
TTATGCTGGATGCCGACGGGTAGAAAGAAGGGTTTAATGTGAAGAACACA
CACGCGATCTAATTATGTCACAGTCATGTATTGCTGGCCTTCTCCTGGTA
AACATGCTCATCAAACTTTGTATCGTTTTGTAGTATATTTGTCACCCTTG
ACACTTTTGTTGTACGTACGCTTGGCAAGCTGTACACCCGACACCTTTGG
TGCTTTGCGTTTTCACCACCAGCTTGCACCGCATCTCCTGCCCAGTGCCG
GCATACCAAGTTACCATAATGTCAGTTTCGATTGGAGGTTGGACGTAAGT
TTCTGATTGATGATGGTGAGATGCCCACGTTCCGTTCCCCCGTCGGATGT
TCCGCGTTTCCGACGGCAACGACAACTGGCGTGGCTCGGCTGGTGTAGCG
CTTGCATAAGTTGTGGCGCACCTTGCCACTATTAGGGTAGGCGGGGTGAG
CGCGAAGAGAAAATTCTCCGCAGTAGCAGCAGGCACTATTAATATGTGTC
TTGCATCCAGACAGGAATCCAGGCACCCAGTACCTACTGCTACTGGGAGA
GTTTCCTCTTCGCGCTCACCTCGCCTGCTCATCAGTAGCAAGGTCCGCCC
CAACTGATGCAAGCTCTACGCCAGCCGGACCACGTCAGTTGTCGCTACCG
TATATGGTGGTCGTATTCGACCTGCCGTCGACGCCAATGCTATTCCTACT
TTCACCGTCGGAGGGCATTGAACCGACGTCTCTCGTGACCCCCGAGACGA
TACCACGACGAACGTGATTTGCGGGGTGGGTGCCATCTGCGACCTTCGCT
TGGCGCAGCCCAATAAGAAACAATGAAGCACGCTAAGCATGCCGGTCTTT
GTGATTGTGTAATGTCATACTTCATTCCTGATTCGCTCGAAGAATGCCGA
AAGCGGCGACTTGCTCGTAGCTGACTGGTACGCTGCAATGCACTTGCTGA
CATGCGCTGTGGTGGTCGTTGCTGCCTGCTGCCGTCTTCGTTTGCGTTTT
GTGTGTTACTTTTTGTGGACAGTTTTCTACGGACGATGGAGGCCGACTTC
CTCTGCTTGCTGCGGTGTACCTCTCGGCCCCCCTCTCACTGGCTGACCTA
GTCGCGGCCATAACGTTCGCAGCTGAACGTTCGAAGGTAACAGATATGCA
GATACGGAAGTATAATATCAGAGCTACTGGATAAAGAAATACCAAGAGAC
ATATATAGGTACTTGGTAGGTATCATACGCAGCGACAGGCATATGAAGGT
AGAGGGAGGCACATGGAGAGCCAGGCGGAAAAAGAGACAGACGGAGGTAC
ATGTACGTAGGGCAGGAGGTAAAGAGACAGAGACATGTATAGAGGTGCGC
AGAGGCTGGCATATAGAGAGGCAGGGGTGGAGATAGACATACGTAGAGAA
AGGTAAAGAAGGAGAGAGGGAGGGAAACAGAGCGAAGAGAGAGAAATAAG
AGGGAAGGAACAGAGGCAGTCAGAGATAGGGAGGGAAGGGAGGCAAGGGC
AGGGATGGATACAGACAAGGAGAGAGGCGGACATAGACGGCTGAGACAGA
GACGGGGGCAGAAAGTCTAGACCAAGTAGGAAGAGAGGACGTAATAGAGG
GAAGCAGCAACGAGACATAAGAGACAGAGAGATGAACTCACACAGACGCA
CTTGTAGATAGACAACAGACAGAGGTGGAGAAAAAGTGAGACAAGAGCTA
CATTGGCGTACAGAGGAAGAAGACAAGACATACGATTAATTTGTACCTAT
GCGAAGAAACATAGAGAGTTAGAGAAAATGAGCTACAACGAGAGGCAGAG
ACACGTCTGGGACAGAAAAAGAGGACAAATACCTGGCATGCACGGGGTGA
GAGATAGGCAAAGAAATAAAAAAGAGGCAGGTAAATTGCCAAAAGATAGT
GATAGATTAATGCGGAGAGATAATAGGGACAGACGCACAGACACTAATTT
CCCGGTGGGTAAATAATAATTTGTTTTCCTCGGTCAAGGAGTGAGGCTTG
ATGTTGCACCGCCGGCTATGAGTTTTGCGCATAAAACAGCCAGTAAAGCA
CTGGAGTGGGGGTTGTACGGCGCGCGCAGGGTGCTCGGCAAGCCTTTTTT
TTTCTGCTCGTGGAAACATGACGGGGTCTATGTTGTTCTCCGGTTACGAA
TATACGGGTAAGGACAATGTTGCCGTTGCCGGTTCTGAAAACACGCGACC
GATTTATCACACACCTACCTGGTCTCAAACTTTTAAACTTGAGAATATTC
GATCAATTAGAGTAGGTCCAACCCACCGCTGACAGCTCACGTAGTTGTGA
CATAGCACAAAGAAAGCAAGAAAGTAAGAAAGGAAATGCATCTCGCTTGA
AAAGCAGCAGAATACAGCCAACCTCGAGAACGAAACTCTACTCAAACTTC
TCCACGAATGGCGCATCCTTCCTCTCCTCCCCACCCCCTCCCCCCCCTCC
TCCCTCGGGAACTCTAGGTTCTCCGCATGGACCTCGAGCACGAAGAGCAC
CGTGGAATGAGGCCAGCACCAGGCCCGCCCGGCCCCGACCCCGACCCCGA
GGAAAACGATCCGGAGTCACGCGCAGACTCGTTTCGGCGGCTATACGACG
CCTTCCTCTTCTTAGCCCTGGCGTTTACTGTGCTTGAGGCGCTCATGCTG
CGGTTGGGAAGGCGGCGTTTGGCGGCGGCGGCGATGCGGAGGAAGGGGCG
AGTGGGGGAGGGGGGCTTCTTGGCGACGGGAGCGCTGGAGTCGCTTCTGG
ATGAGGAGGACTTGAGGCAAACGGGGTGGGAGGATTGGGCCGGGGAGTCT
GTGCAGCAGGTGCGTTATTTGTCTGGCTGCTTCGGCACGGTGGTATGCAC
CTTGAGGCCATGGCGTTGGTGATGGTGATGGTAGCTGGGGCATAGTAGTT
AATAGTAGGAATGGCAGCAGCATTAGTGGTGTATTTTCGGCAATACTATC
TATTAGGAGGAAAAGTAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGCAGTAGTAGTAGTAGT
AGTTGTAGTAGTAGTAGTAGTAGTAGGAGTAGTAATAGTCGTAATAGTCG
TAGTCGTAGTCGTAGTAGTAGTAGTAGTAGTAGTACTACACTACGGTAAA
ATGTTTATCTCGTTGCTACTGTAGTTATAACCTCCATATCTGCCTCATCA
GCTCTCTTCGAGCGATCGGCCACGGTTGACATTGAGACATTCAGTGAAAA
TGAATACATTAGGCATTGGGGCATTCACATTGTCCGTCTATTCTCTACCT
GGTATGTTTTTTGTAACTGGTTTTGTCTCGTCCGTCCTCTTGAACACCAT
GATGGTGTCCTGTTGCCTTCATGCTGCTTTTGTTTTACTAAAAGCAGAAC
CTGGTGATGGAGCAAAGGTACGAGCAACTGCGGAGGAAGAACTCCGAGCG
GAACGAGGGCCTGCTCGAACAAACGAGAGGAGGCGACAAGAACAGATTGT
AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig879:18669..23920+

>mRNA_M-pyrifera_M_contig879.20430.1 ID=mRNA_M-pyrifera_M_contig879.20430.1|Name=mRNA_M-pyrifera_M_contig879.20430.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1668bp|location=Sequence derived from alignment at M-pyrifera_M_contig879:18669..23920+ (Macrocystis pyrifera P11B4 male)
ATGCGCCACAACAATGCGCTCCGGCGCTCGTGGGCGAAACGAGTTCGCCA
AGACAATAGTTTCCGTGCGGACGCCCCTTCTCCGACGTTTGTTCCTCTGA
CCCTCTTTCGCGGGCTAGGCGGAGTAGCCTTCTTATGCTTCGGCGAGCTC
TTCTGGGTACATCTCTCCCGCATGGGGATGGAAGAAGAGGGGAAGCTGTT
GGGCTCGATATCGCTGCTCTTGGGGTCGGTGATGGTGGTTGGGGCTCTGT
GTGGAGCTGCGGGGGTGTCGATGCGCCACAACAATGCGCTCCGGCGCTCG
TGGGCGAAACGAGTTCGCCAAGACAATAGTTTCCGTGCGGACGCCCCTTC
TCCGACGTTTGTTCCTCTGACCCTCTTTCGCGGGCTAGGCGGAGTAGCCT
TCTTATGCTTCGGCGAGCTCTTCTGGGTACATCTCTCCCGCATGGGGATG
GAAGAAGAGGGGAAGCTGTTGGGCTCGATATCGCTGCTCTTGGGGTCGGT
GATGGTGGTTGGGGCTCTGTGTGGAGCTGCGGGGGTGTCGTTTTCTACGG
ACGATGGAGGCCGACTTCCTCTGCTTGCTGCGGTGTACCTCTCGGCCCCC
CTCTCACTGGCTGACCTAGTCGCGGCCATAACGTTCGCAGCTGAACGTTC
GAAGTTTTCTACGGACGATGGAGGCCGACTTCCTCTGCTTGCTGCGGTGT
ACCTCTCGGCCCCCCTCTCACTGGCTGACCTAGTCGCGGCCATAACGTTC
GCAGCTGAACGTTCGAAGGTTCTCCGCATGGACCTCGAGCACGAAGAGCA
CCGTGGAATGAGGCCAGCACCAGGCCCGCCCGGCCCCGACCCCGACCCCG
AGGAAAACGATCCGGAGTCACGCGCAGACTCGTTTCGGCGGCTATACGAC
GCCTTCCTCTTCTTAGCCCTGGCGTTTACTGTGCTTGAGGCGCTCATGCT
GCGGTTGGGAAGGCGGCGTTTGGCGGCGGCGGCGATGCGGAGGAAGGGGC
GAGTGGGGGAGGGGGGCTTCTTGGCGACGGGAGCGCTGGAGTCGCTTCTG
GATGAGGAGGACTTGAGGCAAACGGGGTGGGAGGATTGGGCCGGGGAGTC
TGTGCAGCAGGTTCTCCGCATGGACCTCGAGCACGAAGAGCACCGTGGAA
TGAGGCCAGCACCAGGCCCGCCCGGCCCCGACCCCGACCCCGAGGAAAAC
GATCCGGAGTCACGCGCAGACTCGTTTCGGCGGCTATACGACGCCTTCCT
CTTCTTAGCCCTGGCGTTTACTGTGCTTGAGGCGCTCATGCTGCGGTTGG
GAAGGCGGCGTTTGGCGGCGGCGGCGATGCGGAGGAAGGGGCGAGTGGGG
GAGGGGGGCTTCTTGGCGACGGGAGCGCTGGAGTCGCTTCTGGATGAGGA
GGACTTGAGGCAAACGGGGTGGGAGGATTGGGCCGGGGAGTCTGTGCAGC
AGCAGAACCTGGTGATGGAGCAAAGGTACGAGCAACTGCGGAGGAAGAAC
TCCGAGCGGAACGAGGGCCTGCTCGAACAAACGAGAGGAGGCGACAAGAA
CAGATTGTAGCAGAACCTGGTGATGGAGCAAAGGTACGAGCAACTGCGGA
GGAAGAACTCCGAGCGGAACGAGGGCCTGCTCGAACAAACGAGAGGAGGC
GACAAGAACAGATTGTAG
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