mRNA_M-pyrifera_M_contig879.20428.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig879.20428.1
Unique NamemRNA_M-pyrifera_M_contig879.20428.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig879.20428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig879contigM-pyrifera_M_contig879:10522..11019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size498
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig879.20428.1prot_M-pyrifera_M_contig879.20428.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig879 10592..10909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.7400012-UTR-M-pyrifera_M_contig879:10521..105911622816788.7400012-UTR-M-pyrifera_M_contig879:10521..10591Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig879 10522..10591 +
1692278179.121685-UTR-M-pyrifera_M_contig879:10521..105911692278179.121685-UTR-M-pyrifera_M_contig879:10521..10591Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig879 10522..10591 +
1622816788.7669005-UTR-M-pyrifera_M_contig879:10909..110191622816788.7669005-UTR-M-pyrifera_M_contig879:10909..11019Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig879 10910..11019 +
1692278179.1430483-UTR-M-pyrifera_M_contig879:10909..110191692278179.1430483-UTR-M-pyrifera_M_contig879:10909..11019Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig879 10910..11019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.753372-CDS-M-pyrifera_M_contig879:10591..109091622816788.753372-CDS-M-pyrifera_M_contig879:10591..10909Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 10592..10909 +
1692278179.13329-CDS-M-pyrifera_M_contig879:10591..109091692278179.13329-CDS-M-pyrifera_M_contig879:10591..10909Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig879 10592..10909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig879.20428.1

>prot_M-pyrifera_M_contig879.20428.1 ID=prot_M-pyrifera_M_contig879.20428.1|Name=mRNA_M-pyrifera_M_contig879.20428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MGISRIRLPALRKVRRSSWMMLTMMLTGSAARARCIWYQSFEKGFLSKIE
KRTLRCYSRKLISEIWYQVCEMLGLAPKMYIFVFSLWGYSRDNKSVLFSC
VACRG*
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mRNA from alignment at M-pyrifera_M_contig879:10522..11019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig879.20428.1 ID=mRNA_M-pyrifera_M_contig879.20428.1|Name=mRNA_M-pyrifera_M_contig879.20428.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig879:10522..11019+ (Macrocystis pyrifera P11B4 male)
GCCGTAGTCGTATGACTACAGGACCACAGACCCTAGTATCCCAACCACAC
CAGACGTGGAGAGGCCATACATGGGAATATCCCGAATTCGCCTGCCTGCT
TTAAGGAAGGTTCGCCGTTCTTCGTGGATGATGCTGACGATGATGCTGAC
AGGCTCGGCGGCGCGTGCGAGGTGTATTTGGTATCAGAGTTTTGAAAAAG
GATTTTTATCAAAAATCGAAAAGAGAACATTAAGGTGTTATTCTCGAAAA
TTGATATCTGAAATCTGGTACCAGGTATGTGAAATGTTGGGGTTGGCGCC
CAAGATGTACATTTTTGTTTTTTCGCTGTGGGGGTATAGTAGAGACAACA
AGTCTGTGTTGTTCAGCTGTGTGGCTTGTCGCGGTTAGTTATACGTGTTG
TGGCTGTCGTTGGTTGCGCCCAGGCAAGGAAAGGCGTATGGGTGTGGTGT
TGTGAGTTATTTGGTTTCGTGTATCGATACATGAGGCCAGGTGGGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig879:10522..11019+

>mRNA_M-pyrifera_M_contig879.20428.1 ID=mRNA_M-pyrifera_M_contig879.20428.1|Name=mRNA_M-pyrifera_M_contig879.20428.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig879:10522..11019+ (Macrocystis pyrifera P11B4 male)
ATGGGAATATCCCGAATTCGCCTGCCTGCTTTAAGGAAGGTTCGCCGTTC
TTCGTGGATGATGCTGACGATGATGCTGACAGGCTCGGCGGCGCGTGCGA
GGTGTATTTGGTATCAGAGTTTTGAAAAAGGATTTTTATCAAAAATCGAA
AAGAGAACATTAAGGTGTTATTCTCGAAAATTGATATCTGAAATCTGGTA
CCAGGTATGTGAAATGTTGGGGTTGGCGCCCAAGATGTACATTTTTGTTT
TTTCGCTGTGGGGGTATAGTAGAGACAACAAGTCTGTGTTGTTCAGCTGT
GTGGCTTGTCGCGGTTAGATGGGAATATCCCGAATTCGCCTGCCTGCTTT
AAGGAAGGTTCGCCGTTCTTCGTGGATGATGCTGACGATGATGCTGACAG
GCTCGGCGGCGCGTGCGAGGTGTATTTGGTATCAGAGTTTTGAAAAAGGA
TTTTTATCAAAAATCGAAAAGAGAACATTAAGGTGTTATTCTCGAAAATT
GATATCTGAAATCTGGTACCAGGTATGTGAAATGTTGGGGTTGGCGCCCA
AGATGTACATTTTTGTTTTTTCGCTGTGGGGGTATAGTAGAGACAACAAG
TCTGTGTTGTTCAGCTGTGTGGCTTGTCGCGGTTAG
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